-
1
-
-
0013433957
-
Distance geometry: Theory, algorithms, and chemical applications
-
John Wiley & Sons, New York
-
Havel, T. F. (1998). Distance geometry: theory, algorithms, and chemical applications. Encyclopedia of Computational Chemistry. John Wiley & Sons, New York.
-
(1998)
Encyclopedia of Computational Chemistry
-
-
Havel, T.F.1
-
2
-
-
37148998812
-
-
Vendruscolo, M. and Domany, E. (1999). Protein folding using contact maps. arXiv cond-mat, 9901215.
-
Vendruscolo, M. and Domany, E. (1999). Protein folding using contact maps. arXiv cond-mat, 9901215.
-
-
-
-
3
-
-
0027228364
-
Protein structures from, distance inequalities
-
Bohr, J., Bohr, H., Brunak, S., Cotterill, R. M., Fredholm, H., Lautrup, B. and Petersen, S. B. (1993). Protein structures from, distance inequalities. Journal of Molecular Biology 231, 861-869.
-
(1993)
Journal of Molecular Biology
, vol.231
, pp. 861-869
-
-
Bohr, J.1
Bohr, H.2
Brunak, S.3
Cotterill, R.M.4
Fredholm, H.5
Lautrup, B.6
Petersen, S.B.7
-
4
-
-
0035700864
-
Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations
-
Fariselli, P., Olmea, O., Valencia, A. and Casadio, R. (2001). Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations. Proteins Suppl 5, 157-162.
-
(2001)
Proteins
, Issue.SUPPL. 5
, pp. 157-162
-
-
Fariselli, P.1
Olmea, O.2
Valencia, A.3
Casadio, R.4
-
7
-
-
0033309959
-
Algorithmic aspects of protein structure similarity
-
New York, USA
-
Goldman, D., Istrail, S. and Papadimitriou, C. (1999). Algorithmic aspects of protein structure similarity. Proceedings of the 40th IEEE Symposium on Foundations of Computer Science, New York, (USA), 512-522.
-
(1999)
Proceedings of the 40th IEEE Symposium on Foundations of Computer Science
, pp. 512-522
-
-
Goldman, D.1
Istrail, S.2
Papadimitriou, C.3
-
8
-
-
0035663988
-
Prediction of contact maps with neural networks and correlated mutations
-
Fariselli, P., Olmea, O., Valencia, A. and Casadio, R. (2001). Prediction of contact maps with neural networks and correlated mutations. Protein Engineering 14, 835-843.
-
(2001)
Protein Engineering
, vol.14
, pp. 835-843
-
-
Fariselli, P.1
Olmea, O.2
Valencia, A.3
Casadio, R.4
-
9
-
-
3142558004
-
Reconstruction of protein structures from a vectorial representation
-
Porto, M., Bastolla, U., Roman, H. E. and Vendruscolo, M. (2004). Reconstruction of protein structures from a vectorial representation. Physical Review Letters 92, 218101.
-
(2004)
Physical Review Letters
, vol.92
, pp. 218101
-
-
Porto, M.1
Bastolla, U.2
Roman, H.E.3
Vendruscolo, M.4
-
10
-
-
0036568293
-
Prediction of coordination number and relative solvent accessibility in proteins
-
Pollastri, G., Baldi, P., Fariselli, P. and Casadio, R. (2002). Prediction of coordination number and relative solvent accessibility in proteins. Proteins 47(2), 142-153.
-
(2002)
Proteins
, vol.47
, Issue.2
, pp. 142-153
-
-
Pollastri, G.1
Baldi, P.2
Fariselli, P.3
Casadio, R.4
-
11
-
-
0028295169
-
Correlated mutations and residue contacts in proteins
-
Goebel, U., Sander, C., Schneider, R. and Valencia, A. (1994). Correlated mutations and residue contacts in proteins. Proteins 18, 309-317.
-
(1994)
Proteins
, vol.18
, pp. 309-317
-
-
Goebel, U.1
Sander, C.2
Schneider, R.3
Valencia, A.4
-
12
-
-
0030627941
-
Improving contact predictions by the combination of correlated mutations and other sources of sequence information
-
Olmea, O. and Valencia, A. (1997). Improving contact predictions by the combination of correlated mutations and other sources of sequence information. Folding & Design 2, S25-S32.
-
(1997)
Folding & Design
, vol.2
-
-
Olmea, O.1
Valencia, A.2
-
13
-
-
0033047710
-
A neural network based predictor of residue contacts in proteins
-
Fariselli, P. and Casadio, R. (1999). A neural network based predictor of residue contacts in proteins. Protein Engineering 12, 15-21.
-
(1999)
Protein Engineering
, vol.12
, pp. 15-21
-
-
Fariselli, P.1
Casadio, R.2
-
14
-
-
21444454088
-
PROFcon: Novel prediction of long-range contacts
-
Punta, M. and Rost, B. (2005). PROFcon: novel prediction of long-range contacts. Bioinformatics 21, 2960-2968.
-
(2005)
Bioinformatics
, vol.21
, pp. 2960-2968
-
-
Punta, M.1
Rost, B.2
-
15
-
-
0043222570
-
Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA
-
Bystroff, C. and Shao, Y. (2002). Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA. Bioinformatics 18 Suppl 1, S54-S61.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Bystroff, C.1
Shao, Y.2
-
17
-
-
24744453057
-
Striped sheets and protein contact prediction
-
MacCallum, R. M. (2004). Striped sheets and protein contact prediction. Bioinformatics 20 Suppl 1, 1224-1231.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
, pp. 1224-1231
-
-
MacCallum, R.M.1
-
18
-
-
0041719954
-
Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners
-
Pollastri, G. and Baldi, P. (2002). Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners. Bioinformatics 18 Suppl 1, S62-S70.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Pollastri, G.1
Baldi, P.2
-
19
-
-
33745610096
-
A two-stage approach for improved prediction of residue contact maps
-
Vullo, A., Walsh, I. and Pollastri, G. (2006). A two-stage approach for improved prediction of residue contact maps. BMC Bioinformatics 7, 180.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 180
-
-
Vullo, A.1
Walsh, I.2
Pollastri, G.3
-
20
-
-
0242330721
-
CAFASP3 in the Spotlight of EVA
-
Eyrich, V. A., Przybylski, D., Koh, I. Y., Grana, O., Pazos, F., Valencia, A. and Rost, B. (2003). CAFASP3 in the Spotlight of EVA. Proteins 53 Suppl 6, 548-560.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 548-560
-
-
Eyrich, V.A.1
Przybylski, D.2
Koh, I.Y.3
Grana, O.4
Pazos, F.5
Valencia, A.6
Rost, B.7
-
21
-
-
30344453347
-
CASP6 assessment of contact prediction
-
Grana, O., Baker, D., MacCallum, R. M., Meiler, J., Punta, M., Rost, B., Tress, M. L. and Valencia, A. (2005). CASP6 assessment of contact prediction. Proteins 61 Suppl 7, 214-224.
-
(2005)
Proteins
, vol.61
, Issue.SUPPL. 7
, pp. 214-224
-
-
Grana, O.1
Baker, D.2
MacCallum, R.M.3
Meiler, J.4
Punta, M.5
Rost, B.6
Tress, M.L.7
Valencia, A.8
-
23
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts, D. J. and Strogatz, S. H. (1998). Collective dynamics of 'small-world' networks. Nature 393, 440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
24
-
-
41349118690
-
Small-world view of the amino acids that play a key role in protein folding
-
Vendruscolo, M., Dokholyan, N. V., Paci, E. and Karplus, M. (2002). Small-world view of the amino acids that play a key role in protein folding. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics 65, 061910.
-
(2002)
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
, vol.65
, pp. 061910
-
-
Vendruscolo, M.1
Dokholyan, N.V.2
Paci, E.3
Karplus, M.4
-
26
-
-
0031728015
-
Efficient dynamics in the space of contact maps
-
Vendruscolo, M. and Domany, E. (1998). Efficient dynamics in the space of contact maps. Folding & Design 3, 329-336.
-
(1998)
Folding & Design
, vol.3
, pp. 329-336
-
-
Vendruscolo, M.1
Domany, E.2
-
27
-
-
0035932735
-
Smart Darting Monte Carlo
-
Andricioaei, I., Voter, A. F. and Straub, J. E. (2001). Smart Darting Monte Carlo. The Journal of Chemical Physics 114, 6994-7000.
-
(2001)
The Journal of Chemical Physics
, vol.114
, pp. 6994-7000
-
-
Andricioaei, I.1
Voter, A.F.2
Straub, J.E.3
-
28
-
-
0346057951
-
Small-world communication of residues and significance for protein dynamics
-
Atilgan, A. R., Akan, P. and Baysal, C. (2004). Small-world communication of residues and significance for protein dynamics. Biophysical Journal 86, 85-91.
-
(2004)
Biophysical Journal
, vol.86
, pp. 85-91
-
-
Atilgan, A.R.1
Akan, P.2
Baysal, C.3
-
29
-
-
9944223645
-
Network properties of protein structures
-
Bagler, G. and Sinha, S. (2005). Network properties of protein structures. Physica A 346, 27-33.
-
(2005)
Physica A
, vol.346
, pp. 27-33
-
-
Bagler, G.1
Sinha, S.2
-
30
-
-
0242720597
-
Uncovering network systems within protein structures
-
Greene, L. H. and Higman, V. A. (2003). Uncovering network systems within protein structures. Journal of Molecular Biology 334, 781-791.
-
(2003)
Journal of Molecular Biology
, vol.334
, pp. 781-791
-
-
Greene, L.H.1
Higman, V.A.2
-
31
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi, A. L. and Albert, R. (1999). Emergence of scaling in random networks. Science 286, 509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
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