-
1
-
-
0031575423
-
MONSSTER: A method for folding globular proteins with a small number of distance restraints
-
Skolnick J, Kolinski A, Ortiz AR. MONSSTER: A method for folding globular proteins with a small number of distance restraints. J Mol Biol 1997;265:217-241.
-
(1997)
J Mol Biol
, vol.265
, pp. 217-241
-
-
Skolnick, J.1
Kolinski, A.2
Ortiz, A.R.3
-
2
-
-
0023660022
-
Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus
-
Altschuh D, Lesk AM, Bloomer AC, Klug A. Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus. J Mol Biol 1987;193:693-707.
-
(1987)
J Mol Biol
, vol.193
, pp. 693-707
-
-
Altschuh, D.1
Lesk, A.M.2
Bloomer, A.C.3
Klug, A.4
-
3
-
-
0024084164
-
Coordinated amino acid changes in homologous protein families
-
Altschuh D, Vernet T, Berti P, Moras D, Nagai K. Coordinated amino acid changes in homologous protein families. Protein Eng 1988;2:193-199.
-
(1988)
Protein Eng
, vol.2
, pp. 193-199
-
-
Altschuh, D.1
Vernet, T.2
Berti, P.3
Moras, D.4
Nagai, K.5
-
4
-
-
0028295169
-
Correlated mutations and residue contacts in proteins
-
Gobel U, Sander C, Schneider R, Valencia A. Correlated mutations and residue contacts in proteins. Proteins 1994;18:309-317.
-
(1994)
Proteins
, vol.18
, pp. 309-317
-
-
Gobel, U.1
Sander, C.2
Schneider, R.3
Valencia, A.4
-
5
-
-
0027952860
-
Compensating changes in protein multiple sequence alignments
-
Taylor WR, Hatrick K. Compensating changes in protein multiple sequence alignments. Protein Eng 1994;7:341-348.
-
(1994)
Protein Eng
, vol.7
, pp. 341-348
-
-
Taylor, W.R.1
Hatrick, K.2
-
6
-
-
0033582946
-
Coevolving protein residues: Maximum likelihood identification and relationship to structure
-
Pollock DD, Taylor WR, Goldman N. Coevolving protein residues: Maximum likelihood identification and relationship to structure. J Mol Biol 1999;287:187-198.
-
(1999)
J Mol Biol
, vol.287
, pp. 187-198
-
-
Pollock, D.D.1
Taylor, W.R.2
Goldman, N.3
-
7
-
-
0033744204
-
Exploring a phylogenetic approach for the detection of correlated substitutions in proteins
-
Tuffery P, Darlu P. Exploring a phylogenetic approach for the detection of correlated substitutions in proteins. Mol Biol Evol 2000; 17:1753-1759.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1753-1759
-
-
Tuffery, P.1
Darlu, P.2
-
8
-
-
0036301488
-
Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences
-
Fukami-Kobayashi K, Schreiber DR, Benner SA. Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences. J Mol Biol 2002;319:729-743.
-
(2002)
J Mol Biol
, vol.319
, pp. 729-743
-
-
Fukami-Kobayashi, K.1
Schreiber, D.R.2
Benner, S.A.3
-
9
-
-
3543089710
-
A perturbation-based method for calculating explicit likelihood of evolutionary covariance in multiple sequence alignments
-
Dekker JP, Fodor A, Aldrich RW, Yellen G. A perturbation-based method for calculating explicit likelihood of evolutionary covariance in multiple sequence alignments. Bioinformatics 2004;20:1565-1572.
-
(2004)
Bioinformatics
, vol.20
, pp. 1565-1572
-
-
Dekker, J.P.1
Fodor, A.2
Aldrich, R.W.3
Yellen, G.4
-
10
-
-
33744457709
-
A novel method for detecting intramolecular coevolution: Adding a further dimension to selective constraints analyses
-
Fares MA, Travers SA. A novel method for detecting intramolecular coevolution: Adding a further dimension to selective constraints analyses. Genetics 2006;173:9-23.
-
(2006)
Genetics
, vol.173
, pp. 9-23
-
-
Fares, M.A.1
Travers, S.A.2
-
11
-
-
33751219893
-
Predicting residue contacts using pragmatic correlated mutations method: Reducing the false positives
-
Kundrotas PJ, Alexov EG. Predicting residue contacts using pragmatic correlated mutations method: Reducing the false positives. BMC Bioinformatics 2006;7:503.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 503
-
-
Kundrotas, P.J.1
Alexov, E.G.2
-
12
-
-
3042842115
-
Influence of conservation on calculations of amino acid covariance in multiple sequence alignments
-
Fodor AA, Aldrich RW. Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. Proteins 2004;56:211-221.
-
(2004)
Proteins
, vol.56
, pp. 211-221
-
-
Fodor, A.A.1
Aldrich, R.W.2
-
13
-
-
0029587166
-
A method to predict functional residues in proteins
-
Casari G, Sander C, Valencia A. A method to predict functional residues in proteins. Nat Struct Biol 1995;2:171-178.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 171-178
-
-
Casari, G.1
Sander, C.2
Valencia, A.3
-
14
-
-
0030821675
-
Correlated mutations contain information about protein-protein interaction
-
Pazos F, Helmer-Citterich M, Ausiello G, Valencia A. Correlated mutations contain information about protein-protein interaction. J Mol Biol 1997;271:511-523.
-
(1997)
J Mol Biol
, vol.271
, pp. 511-523
-
-
Pazos, F.1
Helmer-Citterich, M.2
Ausiello, G.3
Valencia, A.4
-
15
-
-
21644454183
-
Scoring docking models with evolutionary information
-
Tress M, de Juan D, Grana O, Gomez MJ, Gomez-Puertas P, Gonzalez JM, Lopez G, Valencia A. Scoring docking models with evolutionary information. Proteins 2005;60:275-280.
-
(2005)
Proteins
, vol.60
, pp. 275-280
-
-
Tress, M.1
de Juan, D.2
Grana, O.3
Gomez, M.J.4
Gomez-Puertas, P.5
Gonzalez, J.M.6
Lopez, G.7
Valencia, A.8
-
16
-
-
30344453347
-
CASP6 assessment of contact prediction
-
Grana O, Baker D, MacCallum RM, Meiler J, Punta M, Rost B, Tress ML, Valencia A. CASP6 assessment of contact prediction. Proteins 2005;61(Suppl 7):214-224.
-
(2005)
Proteins
, vol.61
, Issue.SUPPL. 7
, pp. 214-224
-
-
Grana, O.1
Baker, D.2
MacCallum, R.M.3
Meiler, J.4
Punta, M.5
Rost, B.6
Tress, M.L.7
Valencia, A.8
-
17
-
-
23144467844
-
EVAcon: A protein contact prediction evaluation service
-
Online issue
-
Grana O, Eyrich VA, Pazos F, Rost B, Valencia A. EVAcon: A protein contact prediction evaluation service. Nucleic Acids Res 2005; 33:W347-W351. Online issue.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Grana, O.1
Eyrich, V.A.2
Pazos, F.3
Rost, B.4
Valencia, A.5
-
18
-
-
10744220076
-
Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling
-
Petrey D, Xiang Z, Tang CL, Xie L, Gimpelev M, Mitros T, Soto CS, Goldsmith-Fischman S, Kernytsky A, Schlessinger A, Koh IY, Alexov E, Honig B. Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling. Proteins 2003;53(Suppl 6):430-435.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 430-435
-
-
Petrey, D.1
Xiang, Z.2
Tang, C.L.3
Xie, L.4
Gimpelev, M.5
Mitros, T.6
Soto, C.S.7
Goldsmith-Fischman, S.8
Kernytsky, A.9
Schlessinger, A.10
Koh, I.Y.11
Alexov, E.12
Honig, B.13
-
19
-
-
21444454088
-
PROFcon: Novel prediction of long-range contacts
-
Punta M, Rost B. PROFcon: Novel prediction of long-range contacts. Bioinformatics 2005;21:2960-2968.
-
(2005)
Bioinformatics
, vol.21
, pp. 2960-2968
-
-
Punta, M.1
Rost, B.2
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