-
2
-
-
0034021259
-
RNA folding at elementary step resolution
-
DOI 10.1017/S1355838200992161
-
Flamm C, Fontana W, Hofacker IL, Schuster P (2000) RNA folding at elementary step resolution. RNA 6:325-338 (Pubitemid 30161278)
-
(2000)
RNA
, vol.6
, Issue.3
, pp. 325-338
-
-
Flamm, C.1
Fontana, W.2
Hofacker, I.L.3
Schuster, P.4
-
5
-
-
0004030358
-
-
Addison-Wesley Reading, MA, USA 0668.00003
-
Graham R, Knuth D, Patashnik O (1989) Concrete mathematics: a foundation for computer science. Addison-Wesley, Reading, MA, USA
-
(1989)
Concrete Mathematics: A Foundation for Computer Science
-
-
Graham, R.1
Knuth, D.2
Patashnik, O.3
-
6
-
-
23144462015
-
Hairpin-based state machine and conformational addressing: Design and experiment
-
DOI 10.1007/s11047-004-4007-y
-
A Kameda M Yamamoto H Uejima M Hagiya K. Sakamoto A Ohuchi 2005 Hairpin-based state machine and conformational addressing: Design and experiment Natural Computing 4 103 126 2196239 10.1007/s11047-004-4007-y (Pubitemid 41086479)
-
(2005)
Natural Computing
, vol.4
, Issue.2
, pp. 103-126
-
-
Kameda, A.1
Yamamoto, M.2
Uejima, H.3
Hagiya, M.4
Sakamoto, K.5
Ohuchi, A.6
-
7
-
-
33845437566
-
Computing with hairpins and secondary structures of DNA
-
Chen J, Jonoska N, Rozenberg G (eds) Springer, Heidelberg
-
Hagiya M, Yaegashi S, Takahashi K (2006) Computing with hairpins and secondary structures of DNA. In: Chen J, Jonoska N, Rozenberg G (eds) Nanotechnology: science and computation, natural computing series. Springer, Heidelberg, pp 293-308
-
(2006)
Nanotechnology: Science and Computation, Natural Computing Series
, pp. 293-308
-
-
Hagiya, M.1
Yaegashi, S.2
Takahashi, K.3
-
8
-
-
71549170506
-
NP-completeness of the direct energy barrier problem without pseudoknots
-
Maňuch J, Thachuk C, Stacho L, Condon A (2009) NP-completeness of the direct energy barrier problem without pseudoknots. In: Proceedings of DNA 15, Fayetteville, Arkansas, USA, Lecture Notes in Computer Science, vol 5877:106-115
-
(2009)
Proceedings of DNA 15, Fayetteville, Arkansas, USA, Lecture Notes in Computer Science
, vol.5877
, pp. 106-115
-
-
Maňuch J, T.1
-
9
-
-
0032502487
-
Barrier heights between ground states in a model of RNA secondary structure
-
DOI 10.1088/0305-4470/31/14/005
-
SR Morgan PG Higgs 1998 Barrier heights between ground states in a model of RNA secondary structure J. Phys. A: Math. Gen 31 3153 3170 0923.92008 10.1088/0305-4470/31/14/005 (Pubitemid 128055228)
-
(1998)
Journal of Physics A: Mathematical and General
, vol.31
, Issue.14
, pp. 3153-3170
-
-
Morgan, S.R.1
Higgs, P.G.2
-
10
-
-
0037039464
-
Exploring the folding landscape of a structured RNA
-
DOI 10.1073/pnas.221593598
-
R Russell X Zhuang H Babcock I Millett S Doniach S Chu D Herschlag 2002 Exploring the folding landscape of a structured RNA Proc. Nat. Acad. Sci 99 155 160 10.1073/pnas.221593598 (Pubitemid 34060333)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.1
, pp. 155-160
-
-
Russell, R.1
Zhuang, X.2
Babcock, H.P.3
Millett, I.S.4
Doniach, S.5
Chu, S.6
Herschlag, D.7
-
11
-
-
33845411737
-
Enzyme-free nucleic acid logic circuits
-
DOI 10.1126/science.1132493
-
G Seelig D Soloveichik DY Zhang E Winfree 2006 Enzyme-free nucleic acid logic circuits Science 314 1585 1588 10.1126/science.1132493 (Pubitemid 44907149)
-
(2006)
Science
, vol.314
, Issue.5805
, pp. 1585-1588
-
-
Seelig, G.1
Soloveichik, D.2
Zhang, D.Y.3
Winfree, E.4
-
12
-
-
57549096731
-
Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs
-
Shcherbakova I, Mitra S, Laederach A, Brenowitz M (2008) Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs. Curr Opin Chem Biol 12(6):655-666
-
(2008)
Curr Opin Chem Biol
, vol.12
, Issue.6
, pp. 655-666
-
-
Shcherbakova, I.1
Mitra, S.2
Laederach, A.3
Brenowitz, M.4
-
13
-
-
24644464003
-
DNA nanodevices
-
DOI 10.1002/smll.200400111
-
FC Simmel WU Dittmer 2005 DNA nanodevices Small 1 284 299 10.1002/smll.200400111 (Pubitemid 43951775)
-
(2005)
Small
, vol.1
, Issue.3
, pp. 284-299
-
-
Simmel, F.C.1
Dittmer, W.U.2
-
14
-
-
48449084225
-
Simulating RNA folding kinetics on approximated energy landscapes
-
10.1016/j.jmb.2008.02.007
-
X Tang S Thomas L Tapia DP Giedroc NM Amato 2008 Simulating RNA folding kinetics on approximated energy landscapes J. Mol. Biol 381 1055 1067 10.1016/j.jmb.2008.02.007
-
(2008)
J. Mol. Biol
, vol.381
, pp. 1055-1067
-
-
Tang, X.1
Thomas, S.2
Tapia, L.3
Giedroc, D.P.4
Amato, N.M.5
-
15
-
-
84873050372
-
An algorithm for the energy barrier problem without pseudoknots and temporary arcs
-
Honolulu, Hawaii, USA
-
Thachuk C, Maňuch J, Rafiey A, Mathieson LA, Stacho L, Condon A (2010) An algorithm for the energy barrier problem without pseudoknots and temporary arcs. In: Proceedings of Pacific symposium on biocomputing (PSB), Honolulu, Hawaii, USA, pp 108-119
-
(2010)
Proceedings of Pacific Symposium on Biocomputing (PSB)
, pp. 108-119
-
-
Thachuk C, M.1
-
16
-
-
0035366896
-
Beyond kinetic traps in RNA folding
-
DOI 10.1016/S0959-440X(00)00206-2
-
DK Treiber JR Williamson 2001 Beyond kinetic traps in RNA folding Curr. Opin. Struc. Biol 11 309 314 10.1016/S0959-440X(00)00206-2 (Pubitemid 32568270)
-
(2001)
Current Opinion in Structural Biology
, vol.11
, Issue.3
, pp. 309-314
-
-
Treiber, D.K.1
Williamson, J.R.2
-
17
-
-
33645606763
-
Analyzing secondary structure transition paths of DNA/RNA molecules
-
Springer, Heidelberg
-
Uejima H, Hagiya M (2004a) Analyzing secondary structure transition paths of DNA/RNA molecules. In: DNA computing. Lecture notes in computer science, vol 2943. Springer, Heidelberg, pp 86-90
-
(2004)
DNA Computing. Lecture Notes in Computer Science
, vol.2943
, pp. 86-90
-
-
Uejima, H.1
Hagiya, M.2
-
18
-
-
33645583466
-
Secondary structure design of multi-state DNA machines based on sequential structure transitions
-
Springer, Berlin
-
Uejima H, Hagiya M (2004b) Secondary structure design of multi-state DNA machines based on sequential structure transitions. In: Proceedings of DNA9, Madison, WI, USA, Lecture notes in computer science, vol 2943. Springer, Berlin, pp 74-85
-
(2004)
Proceedings of DNA9, Madison, WI, USA, Lecture Notes in Computer Science
, vol.2943
, pp. 74-85
-
-
Uejima, H.1
Hagiya, M.2
-
21
-
-
38349121586
-
Programming biomolecular self-assembly pathways
-
10.1038/nature06451
-
P Yin H Choi C Calvert N Pierce 2008 Programming biomolecular self-assembly pathways Nature 451 2008 318 322 10.1038/nature06451
-
(2008)
Nature
, vol.451
, Issue.2008
, pp. 318-322
-
-
Yin, P.1
Choi, H.2
Calvert, C.3
Pierce, N.4
|