메뉴 건너뛰기




Volumn 4, Issue 2, 2005, Pages 103-126

Hairpin-based state machine and conformational addressing: Design and experiment

Author keywords

DNA computing; Molecluar machine; Molecular computing; Molecular memory

Indexed keywords

OLIGOMER; SINGLE STRANDED DNA;

EID: 23144462015     PISSN: 15677818     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11047-004-4007-y     Document Type: Article
Times cited : (19)

References (22)
  • 1
    • 0034632783 scopus 로고    scopus 로고
    • A DNA-fuelled molecular machine made of DNA
    • 10.1038/35020524 10949296
    • Yurke. Bernard et al. 2000 A DNA-fuelled molecular machine made of DNA Nature 406 605-608 10.1038/35020524 10949296
    • (2000) Nature , vol.406 , pp. 605-608
    • Yurke, B.1
  • 2
    • 0033552937 scopus 로고    scopus 로고
    • A nanomechanical device based on the B-Z transition of DNA
    • 10.1038/16437 9923675
    • Mao. Chengde et al. 1999 A nanomechanical device based on the B-Z transition of DNA Nature 397 144-146 10.1038/16437 9923675
    • (1999) Nature , vol.397 , pp. 144-146
    • Mao, C.1
  • 3
    • 0034021259 scopus 로고    scopus 로고
    • RNA folding at elementary step resolution
    • 10.1017/S1355838200992161 10744018
    • Flamm. Christoph et al. 2000 RNA folding at elementary step resolution RNA 6 325-338 10.1017/S1355838200992161 10744018
    • (2000) RNA , vol.6 , pp. 325-338
    • Flamm, C.1
  • 4
    • 0029054951 scopus 로고
    • Building an associative memory vastly larger than the brain
    • 7725109
    • EB. Baum 1995 Building an associative memory vastly larger than the brain Science 268 583-585 7725109
    • (1995) Science , vol.268 , pp. 583-585
    • Baum, E.B.1
  • 5
    • 0035304881 scopus 로고    scopus 로고
    • Using DNA to construct and power a nanoactuator
    • 10.1103/PhysRevE.63.041913
    • Simmel. Friedrich C. et al. 2001 Using DNA to construct and power a nanoactuator Physical Review E 63 04191310.1103/PhysRevE.63.041913
    • (2001) Physical Review E , vol.63 , pp. 041913
    • Simmel, F.C.1
  • 6
    • 79956016523 scopus 로고    scopus 로고
    • A DNA-based molecular device switchable between three distinct mechanical states
    • 10.1063/1.1447008
    • Simmel. Friedrich C. 2002 A DNA-based molecular device switchable between three distinct mechanical states Applied Physics Letters 80 883-885 10.1063/1.1447008
    • (2002) Applied Physics Letters , vol.80 , pp. 883-885
    • Simmel, F.C.1
  • 7
    • 0037011984 scopus 로고    scopus 로고
    • A robust DNA mechanical device controlled by hybridization topology
    • Yan. Hao et al. 2002 A robust DNA mechanical device controlled by hybridization topology Nature 145 62-65
    • (2002) Nature , vol.145 , pp. 62-65
    • Yan, H.1
  • 8
    • 0030875847 scopus 로고    scopus 로고
    • Thermodynamics and NMR of internal G·T mismatches in DNA
    • 10.1021/bi962590c 9265640
    • Allawi. Hatim T. et al. 1997 Thermodynamics and NMR of internal G·T mismatches in DNA Biochemistry 36 10581-10594 10.1021/bi962590c 9265640
    • (1997) Biochemistry , vol.36 , pp. 10581-10594
    • Allawi, H.T.1
  • 9
    • 0032562140 scopus 로고    scopus 로고
    • Nearest neighbor thermodynamic parameters for internal G·A mismatches in DNA
    • 10.1021/bi9724873 9485363
    • Allawi. Hatim T. et al. 1998 Nearest neighbor thermodynamic parameters for internal G·A mismatches in DNA Biochemistry 37 2170-2179 10.1021/bi9724873 9485363
    • (1998) Biochemistry , vol.37 , pp. 2170-2179
    • Allawi, H.T.1
  • 10
    • 0032102940 scopus 로고    scopus 로고
    • Thermodynamics of internal C·T mismatches in DNA
    • 10.1093/nar/26.11.2694 9592156
    • Allawi. Hatim T. et al. 1998 Thermodynamics of internal C·T mismatches in DNA Nucleic Acids Research 26 2694-2701 10.1093/nar/ 26.11.2694 9592156
    • (1998) Nucleic Acids Research , vol.26 , pp. 2694-2701
    • Allawi, H.T.1
  • 11
    • 0032581024 scopus 로고    scopus 로고
    • Nearest-neighbor thermodynamics of internal A·C mismatches in DNA: Sequence dependence and pH effects
    • 10.1021/bi9803729 9649326
    • Allawi. Hatim T. et al. 1998 Nearest-neighbor thermodynamics of internal A·C mismatches in DNA: Sequence dependence and pH effects Biochemistry 37 9435-9444 10.1021/bi9803729 9649326
    • (1998) Biochemistry , vol.37 , pp. 9435-9444
    • Allawi, H.T.1
  • 13
    • 34249772381 scopus 로고
    • Fast folding and comparison of RNA secondary structures
    • Hofacker. Ivo L. et al. 1994 Fast folding and comparison of RNA secondary structures Monatshefte für Chemie (Chemical Monthly). 125 167-188
    • (1994) Monatshefte Für Chemie (Chemical Monthly) , vol.125 , pp. 167-188
    • Hofacker, I.L.1
  • 14
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structure
    • 10.1002/bip.360290621 1695107
    • JS. McCaskill et al. 1990 The equilibrium partition function and base pair binding probabilities for RNA secondary structure Biopolymers 29 1105-1119 10.1002/bip.360290621 1695107
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 15
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • 10.1073/pnas.95.4.1460
    • SantaLucia John Jr. 1998 A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics Proceeding of National Academy of Sciences USA 95 1460-1465 10.1073/pnas.95.4.1460
    • (1998) Proceeding of National Academy of Sciences USA , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 16
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • 6163133
    • M. Zuker 1981 Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information Nucleic Acids Research 9 133-148 6163133
    • (1981) Nucleic Acids Research , vol.9 , pp. 133-148
    • Zuker, M.1
  • 17
    • 0033596964 scopus 로고    scopus 로고
    • Nearest neighbor thermodynamics of DNA with A·A, C·C, G·G and T·T mismatches
    • 10.1021/bi9825091 10090733
    • Peyret. Nicolas et al. 1999 Nearest neighbor thermodynamics of DNA with A· A, C· C, G· G and T· T mismatches Biochemistry 38 3468-3477 10.1021/bi9825091 10090733
    • (1999) Biochemistry , vol.38 , pp. 3468-3477
    • Peyret, N.1
  • 18
    • 0034194135 scopus 로고    scopus 로고
    • Thermodynamic parameters for DNA sequences with dangling ends
    • 10.1093/nar/28.9.1929 10756193
    • Bommarito. Salvatore et al. 2000 Thermodynamic parameters for DNA sequences with dangling ends Nucleic Acids Research 28 1929-1934 10.1093/ nar/28.9.1929 10756193
    • (2000) Nucleic Acids Research , vol.28 , pp. 1929-1934
    • Bommarito, S.1
  • 20
    • 0033080745 scopus 로고    scopus 로고
    • Complete suboptimal folding of RNA and the stability of secondary structures
    • 10.1002/(SICI)1097-0282(199902)49:2<145::AID-BIP4>3.0.CO;2-G 10070264
    • Wuchty. Stefan et al. 1999 Complete suboptimal folding of RNA and the stability of secondary structures Biopolymers 49 145-165 10.1002/ (SICI)1097-0282(199902)49:2<145::AID-BIP4>3.0.CO;2-G 10070264
    • (1999) Biopolymers , vol.49 , pp. 145-165
    • Wuchty, S.1
  • 21
    • 0032502487 scopus 로고    scopus 로고
    • Barrier heights between ground states in a model of RNA secondary structure
    • 10.1088/0305-4470/31/14/005
    • Morgan. Steve R. et al. 1998 Barrier heights between ground states in a model of RNA secondary structure J Phys A: Math Gen 31 3153-3170 10.1088/ 0305-4470/31/14/005
    • (1998) J. Phys. A: Math. Gen. , vol.31 , pp. 3153-3170
    • Morgan, S.R.1
  • 22
    • 0038528527 scopus 로고    scopus 로고
    • DNA fuel for free-running nanomachines
    • 10.1103/PhysRevLett.90.118102 118102
    • AJ. Turberfield et al. 2003 DNA fuel for free-running nanomachines Physical Review Letters 90 1110.1103/PhysRevLett.90.118102 118102
    • (2003) Physical Review Letters , vol.90 , pp. 11
    • Turberfield, A.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.