ICEVchInd5 is prevalent in epidemic Vibrio cholerae O1 El Tor strains isolated in India

International Journal of Medical Microbiology

Volumn 301, Issue 4, 2011, Pages 318-324

  Ceccarelli, Daniela ^a   Spagnoletti, Matteo ^a   Bacciu, Donatella ^b   Danin Poleg, Yael ^c   Mendiratta, Deepak K ^d   Kashi, Yechezkel ^c   Cappuccinelli, Piero ^b   Burrus, Vincent ^e   Colombo, Mauro M ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

^b UNIVERSITY OF SASSARI   (Italy)

^c TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

^d MAHATMA GANDHI INSTITUTE OF MEDICAL SCIENCES   (India)

^e UNIVERSITÉ DE SHERBROOKE   (Canada)

Author keywords

ICE; India; Vibrio cholerae

Indexed keywords

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM ISOLATION; GENE AMPLIFICATION; INDIA; INTEGRATIVE CONJUGATIVE ELEMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; RIBOTYPING; VIBRIO CHOLERAE;

BACTERIAL TYPING TECHNIQUES; CHOLERA; CLUSTER ANALYSIS; GENOTYPE; HUMANS; INDIA; INTERSPERSED REPETITIVE SEQUENCES; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; MULTILOCUS SEQUENCE TYPING; RIBOTYPING; VIBRIO CHOLERAE O1;

EID: 79952706969     PISSN: 14384221     EISSN: 16180607     Source Type: Journal    
DOI: 10.1016/j.ijmm.2010.11.005     Document Type: Article

References (40)

1. Alam M., Hasan N.A., Sadique A., Bhuiyan N.A., Ahmed K.U., Nusrin S., Nair G.B., Siddique A.K., Sack R.B., Sack D.A., Huq A., Colwell R.R. Seasonal cholera caused by Vibrio cholerae serogroups O1 and O139 in the coastal aquatic environment of Bangladesh. Appl. Environ. Microbiol. 2006, 72:4096-4104.
2. Bani S., Mastromarino P.N., Ceccarelli D., Van A.L., Salvia A.M., Viet Q.T.N., Hai D.H., Bacciu D., Cappuccinelli P., Colombo M.M. Molecular characterization of ICEVchVie0 and its disappearance in Vibrio cholerae O1 strains isolated in 2003 in Vietnam. FEMS Microbiol. Lett. 2007, 266:42-48.
3. Batra P., Saha A., Vilhekar K.Y., Chaturvedi P., Mendiratta D.K. Vibrio cholerae O1 ogawa (Eltor) diarrhoea at Sevagram. Indian J. Pediatr. 2006, 73:543.
4. Bordeleau E., Brouillette E., Robichaud N., Burrus V. Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae. Environ. Microbiol. 2010, 12:510-523.
5. Burrus V., Marrero J., Waldor M.K. The current ICE age: biology and evolution of SXT-related integrating conjugative elements. Plasmid 2006, 55:173-183.
6. Ceccarelli D., Bani S., Cappuccinelli P., Colombo M.M. Prevalence of aada1 and dfra15 class 1 integron cassettes and SXT circulation in V. cholerae O1 isolates from Africa. J. Antimicrob. Chemother. 2006, 58:1095-1097.
7. Ceccarelli D., Daccord A., Rene M., Burrus V. Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J. Bacteriol. 2008, 190:5328-5338.
8. Chandrasekhar M.R., Krishna B.V., Patil A.B. Changing characteristics of Vibrio cholerae: emergence of multidrug resistance and non-O1, non-O139 serogroups. South Asian J. Trop. Med. Public Health 2008, 39:1092-1097.
9. Chun J., Grim C.J., Hasan N.A., Lee J.H., Choi S.Y., Haley B.J., Taviani E., Jeon Y.-S., Kim D.W., Lee J.-H., Brettin T.S., Bruce D.C., Challacombe J.F., Detter J.C., Han C.S., Munk A.C., Chertkov O., Meincke L., Saunders E., Walters R.A., Huq A., Nair G.B., Colwell R.R. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:15442-15447.
10. Churchward G. Back to the future: the new ICE age. Mol. Microbiol. 2008, 70:554-556.
11. Danin-Poleg Y., Cohen L.A., Gancz H., Broza Y.Y., Goldshmidt H., Malul E., Valinsky L., Lerner L., Broza M., Kashi Y. Vibrio cholerae strain typing and phylogeny study based on simple sequence repeats. J. Clin. Microbiol. 2007, 45:736-746.
12. Faruque S.M., Saha M.N., Asadulghani, Bag P.K., Bhadra R.K., Bhattacharya S.K., Sack R.B., Takeda Y., Nair G.B. Genomic diversity among Vibrio cholerae O139 strains isolated in Bangladesh and India between 1992 and 1998. FEMS Microbiol. Lett. 2000, 184:279-284.
13. Faruque S.M., Sack D.A., Sack R.B., Colwell R.R., Takeda Y., Nair G.B. Emergence and evolution of Vibrio cholerae O139. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:1304-1309.
14. Garg P., Nandy R.K., Chaudhury P., Chowdhury N.R., De K., Ramamurthy T., Yamasaki S., Bhattacharya S.K., Takeda Y., Nair G.B. Emergence of Vibrio cholerae O1 biotype El Tor serotype Inaba from the prevailing O1 Ogawa serotype strains in India. J. Clin. Microbiol. 2000, 38:4249-4253.
15. Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L., Gill S.R., Nelson K.E., Read T.D., Tettelin H., Richardson D., Ermolaeva M.D., Vamathevan J., Bass S., Qin H., Dragoi I., Sellers P., McDonald L., Utterback T., Fleishmann R.D., Nierman W.C., White O. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 2000, 406:477-483.
16. Hochhut B., Lotfi Y., Mazel D., Faruque S.M., Woodgate R., Waldor M.K. Molecular analysis of antibiotic resistance gene clusters in Vibrio cholerae O139 and O1 SXT constins. Antimicrob. Agents Chemother. 2001, 45:2991-3000.
17. Ingole K., Jalgaonkar S., Fule C., Fule R. Changing pattern of Vibrio cholerae serotype El Tor and O139 in Yavatmal (Maharashtra, India) during 1992 to 1994. Indian J. Pathol. Bacteriol. 1997, 40:369-371.
18. Kaper J.B., Morris J.G., Levine M.M. Cholera. Clin. Microbiol. Rev. 1995, 8:48-86.
19. Khetawat G., Bhadra R.K., Kar S., Das J. Vibrio cholerae O139 Bengal: combined physical and genetic map and comparative analysis with the genome of V. cholerae O1. J. Bacteriol. 1998, 180:4516-4522.
20. Krishna B.V.S., Patil A.B., Chandrasekhar M.R. Fluoroquinolone-resistant Vibrio cholerae isolated during a cholera outbreak in India. Trans. R. Soc. Trop. Med. Hyg. 2006, 100:224-226.
21. Marrero J., Waldor M.K. The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J. Bacteriol. 2007, 189:3302-3305.
22. McGrath B.M., O'Halloran J.A., Piterina A.V., Pembroke J.T. Molecular tools to detect the IncJ elements: a family of integrating, antibiotic resistant mobile genetic elements. J. Microbiol. Methods 2006, 66:32-42.
23. Mishra M., Mohammed F., Akulwar S.L., Katkar V.J., Tankhiwale N.S., Powar R.M. Re-emergence of El Tor vibrio in outbreak of cholera in and around Nagpur. Indian J. Med. Res. 2004, 120:478-480.
24. Mohapatra S.S., Ramachandran D., Mantri C.K., Colwell R.R., Singh D.V. Determination of relationships among non-toxigenic Vibrio cholerae O1 biotype El Tor strains from housekeeping gene sequences and ribotype patterns. Res. Microbiol. 2009, 160:57-62.
25. Nair G.B., Faruque S.M., Bhuiyan N.A., Kamruzzaman M., Siddique A.K., Sack D.A. New variants of Vibrio cholerae O1 biotype El Tor with attributes of the classical biotype from hospitalized patients with acute diarrhea in Bangladesh. J. Clin. Microbiol. 2002, 40:3296-3299.
26. Narang P., Mendiratta D., Kannathe J., Ramnani V., Wasekar V., Deotale V. Characteristics of Vibrio cholerae O139 strains isolated in Sevagram (Maharashtra) during April-August 1993. Indian J. Med. Res. 1994, 99:103-104.
27. Narang P., Mendiratta D., Deotale V., Narang R. Changing patterns of Vibrio cholerae in Sevagram between 1990 and 2005. Indian J. Med. Microbiol. 2008, 26:40-44.
28. Peters S.E., Hobman J.L., Strike P., Ritchie D.A. Novel mercury resistance determinants carried by IncJ plasmids pMERPH and R391. Mol. Gen. Genet. 1991, 228:294-299.
29. Popovic T., Bopp C., Olsvik O., Wachsmuth K. Epidemiologic application of a standardized ribotype scheme for Vibrio cholerae O1. J. Clin. Microbiol. 1993, 31:2474-2482.
30. Raz N., Danin-Poleg Y., Broza Y.Y., Arakawa E., Ramakrishna B.S., Broza M., Kashi Y. Environmental monitoring of Vibrio cholerae using chironomids in India. Environ. Microbiol. Rep. 2010, 2:96-103.
31. Safa A., Bhuyian N.A., Nusrin S., Ansaruzzaman M., Alam M., Hamabata T., Takeda Y., Sack D.A., Nair G.B. Genetic characteristics of Matlab variants of Vibrio cholerae O1 that are hybrids between classical and El Tor biotypes. J. Med. Microbiol. 2006, 55:1563-1569.
32. Seth-Smith H., Croucher N.J. Genome watch: breaking the ICE. Nat. Rev. Microbiol. 2009, 7:328-329.
33. Sharma C., Nair G.B., Mukhopadhyay A.K., Bhattacharya S.K., Ghosh R.K., Ghosh A. Molecular characterization of Vibrio cholerae O1 biotype E1 Tor strains isolated between 1992 and 1995 in Calcutta, India: evidence for the emergence of a new clone of the El Tor biotype. J. Infect. Dis. 1997, 175:1134-1141.
34. Sharma C., Ghosh A., Dalsgaard A., Forslund A., Ghosh R.K., Bhattacharya S.K., Nair G.B. Molecular evidence that a distinct Vibrio cholerae O1 biotype El Tor strain in Calcutta may have spread to the African continent. J. Clin. Microbiol. 1998, 36:843-844.
35. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
36. Thungapathra M., Amita, Sinha K.K., Chaudhuri S.R., Garg P., Ramamurthy T., Nair G.B., Ghosh A. Occurrence of antibiotic resistance gene cassettes aac(6')-Ib, dfrA5, dfrA12, and ereA2 in class 1 integrons in non-O1, non-O139 Vibrio cholerae strains in India. Antimicrob. Agents Chemother. 2002, 46:2948-2955.
37. Waldor M.K., Tschäpe H., Mekalanos J.J. A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139. J. Bacteriol. 1996, 178:4157-4165.
38. Wozniak R.A.F., Fouts D.E., Spagnoletti M., Colombo M.M., Ceccarelli D., Garriss G., Déry C., Burrus V., Waldor M.K. Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 2009, 5:e1000786. doi:1000710.1001371/journal.pgen.1000786.
39. Wozniak R.A.F., Waldor M.K. A toxin-antitoxin system promotes the maintenance of an integrative conjugative element. PLoS Genet. 2009, 5:e1000439. doi:1000410.1001371/journal.pgen.1000439.
40. Wozniak R.A.F., Waldor M.K. Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat. Rev. Microbiol. 2010, 8:552-563.