Determination of relationships among non-toxigenic Vibrio cholerae O1 biotype El Tor strains from housekeeping gene sequences and ribotype patterns

Research in Microbiology

Volumn 160, Issue 1, 2009, Pages 57-62

  Mohapatra, Saswat S ^a   Ramachandran, Dhanya ^b   Mantri, Chinmay K ^a   Colwell, Rita R ^c   Singh, Durg V ^a  

^a INSTITUTE OF LIFE SCIENCES   (India)

^b RAJIV GANDHI CENTRE FOR BIOTECHNOLOGY   (India)

^c UNIVERSITY OF MARYLAND   (United States)

Author keywords

Housekeeping genes; Ribotyping; Sequencing; Vibrio cholerae

Indexed keywords

DNA DIRECTED DNA POLYMERASE GAMMA; DNA POLYMERASE III HOLOENZYME ALPHA SUBUNIT; MALATE DEHYDROGENASE; RECA PROTEIN; UNCLASSIFIED DRUG; VIRULENCE FACTOR;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM ISOLATION; CONTROLLED STUDY; GENE SEQUENCE; GENETIC ASSOCIATION; GUAM; HOUSEKEEPING GENE; INDIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RECA GENE; RIBOTYPING; STRAIN DIFFERENCE; UNITED STATES; VIBRIO CHOLERAE;

BASE SEQUENCE; DNA POLYMERASE III; DNA, BACTERIAL; GENES, BACTERIAL; GENETIC VARIATION; MALATE DEHYDROGENASE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; REC A RECOMBINASES; RECOMBINATION, GENETIC; RIBOTYPING; SEQUENCE ANALYSIS, DNA; VIBRIO CHOLERAE O1; VIRULENCE;

VIBRIO CHOLERAE;

EID: 58149527825     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2008.10.008     Document Type: Article

References (26)

1. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. Short Protocol in Molecular Biology (1995), Wiley, New York
2. Bauer A.W., Kirby W.M.M., Sherris J.C., and Turck M. Antibiotic susceptibility testing by a standardized single disc diffusion method. Am. J. Clin. Pathol. 45 (1966) 493-496
3. Boyd E.F., Moyer K.L., Shi L., and Waldor M.K. Infectious CTXF{cyrillic} and the Vibrio pathogenicity island prophage in Vibrio mimicus: evidence for recent horizontal transfer between V. mimicus and V. cholerae. Infect. Immun. 68 (2000) 1507-1513
4. Byun R., Elbourne L.D.H., Lan R., and Reeves P.R. Evolutionary relationships of pathogenic clones of Vibrio cholerae by sequence analysis of four housekeeping genes. Infect. Immun. 67 (1999) 1116-1124
5. Cameron D.N., Khambaty F.M., Wachsmuth I.K., Tauxe R.V., and Barrett T.J. Molecular characterization of Vibrio cholerae O1 isolates by pulsed-field gel electrophoresis. J. Clin. Microbiol. 32 (1994) 1685-1690
6. Chen F., Evins G.M., Cook W.L., Almeida R., Hargrett-Bean N., and Wachsmuth K. Genetic diversity among toxigenic and nontoxigenic Vibrio cholerae O1 isolated from the Western Hemisphere. Epidemiol. Infect. 107 (1991) 225-233
7. Colwell R.R., Kaper J., and Joseph S.W. Vibrio cholerae, Vibrio parahaemolyticus, and other vibrios: occurrence and distribution in Chesapeake Bay. Science 198 (1977) 394-396
8. Farfan M., Minana D., Fuste M.C., and Loren J.G. Genetic relationships between clinical and environmental Vibrio cholerae isolates based on multilocus enzyme electrophoresis. Microbiology 146 (2000) 2613-2626
9. Feil E.J. Small change: keeping pace with microevolution. Nat. Rev. Microbiol. 2 (2004) 483-497
10. Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 406 (2000) 477-483
11. Huson D.H., and Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23 (2006) 254-267
12. Jiang S.C., Louis V., Choopun N., Sharma A., Huq A., and Colwell R.R. Genetic diversity of Vibrio cholerae in Chesapeake Bay determined by amplified fragment length polymorphism fingerprinting. Appl. Environ. Microbiol. 66 (2000) 140-147
13. Jukes T.H., and Cantor C.R. Evolution of protein molecules. In: Munro H.N. (Ed). Mammalian Protein Metabolism (1969), Academic Press, New York 121-132
14. Kaper J.B., Moseley S.L., and Falkow S. Molecular characterization of environmental and non-toxigenic strains of Vibrio cholerae. Infect. Immun. 32 (1981) 661-667
15. Kotetishvili M., Stine O.C., Chen Y., Kreger A., Sulakvelidze A., Sozhamannan S., and Morris Jr. J.G. Multilocus sequence typing has better discriminatory ability for typing Vibrio cholerae than does pulsed-field gel electrophoresis and provides a measure of phylogenetic relatedness. J. Clin. Microbiol. 41 (2003) 2191-2196
16. Mohapatra S.S., Ramachandran D., Mantri C.K., and Singh D.V. Characterization of the genetic background of Vibrio cholerae O1 biotype El Tor serotype Inaba strains isolated in Trivandrum, southern India. J. Med. Microbiol. 56 (2007) 260-265
17. Pang B., Yan M., Cui Z., Ye X., Diao B., Ren Y., Gao S., Zhang L., and Kan B. Genetic diversity of toxigenic and non-toxigenic Vibrio cholerae serogroups O1 and O139 revealed by array-based comparative genomic hybridization. J. Bacteriol. 189 (2007) 4837-4849
18. Popovic T., Bopp C., Olsvik O., and Wachsmuth K. Epidemiologic application of a standardized ribotype scheme for Vibrio cholerae O1. J. Clin. Microbiol. 31 (1993) 2474-2482
19. Rivera I.G., Chowdhury M.A.R., Huq A., Jacobs D., Martins M.T., and Colwell R.R. Enterobacterial repetitive intergenic consensus sequence and the PCR to generate fingerprints of genomic DNAs from Vibrio cholerae O1, O139 and non-O1 strains. Appl. Environ. Microbiol. 61 (1995) 2898-2904
20. Rozas J., Sánchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
21. Singh D.V., Isac S.R., and Colwell R.R. Development of a hexaplex PCR assay for rapid detection of virulence and regulatory genes in Vibrio cholerae and Vibrio mimicus. J. Clin. Microbiol. 40 (2002) 4321-4324
22. Singh D.V., Matte M.H., Matte G.R., Jiang S., Sabeena F., Shukla B.N., Sanyal S.C., Huq A., and Colwell R.R. Molecular analysis of Vibrio cholerae O1, O139, non-O1, and non-O139 strains: clonal relationships between clinical and environmental isolates. Appl. Environ. Microbiol. 67 (2001) 910-921
23. Southern E.M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98 (1975) 503-517
24. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
25. Waldor M.K., and Mekalanos J.J. Lysogenic conversion by a filamentous phage encoding cholera toxin. Science 272 (1996) 1910-1914
26. World Health Organization. Manual for Laboratory Investigation of Acute Enteric Infections, Publication WHO CDD/ 83.3, Program for Control of Diarrhoeal Diseases (1987), World Health Organization, Geneva