Assessment of the domestication state of ackee (Blighia sapida K.D. Koenig) in Benin based on AFLP and microsatellite markers

Conservation Genetics

Volumn 12, Issue 2, 2011, Pages 475-489

  Ekué, Marius R M ^a,b   Gailing, Oliver ^c   Vornam, Barbara ^a   Finkeldey, Reiner ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSITY OF ABOMEY CALAVI   (Benin)

^c MICHIGAN TECHNOLOGICAL UNIVERSITY   (United States)

Author keywords

AFLP; Agroforestry; Blighia sapida; Domestication; Genetic structure; Human impact; Nuclear and chloroplast microsatellites

Indexed keywords

AGROFORESTRY; ANTHROPOGENIC EFFECT; CONSERVATION GENETICS; DICOTYLEDON; DOMESTICATION; GENETIC RESOURCE; GENETIC VARIATION; HETEROZYGOSITY; POLYMORPHISM; RURAL POPULATION; SPATIAL DISTRIBUTION;

BENIN [WEST AFRICA]; NIGERIA;

BLIGHIA; BLIGHIA SAPIDA;

EID: 79952700483     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-010-0155-z     Document Type: Article

References (67)

1. Assogbadjo AE, Kyndt T, Sinsin B, Gheysen G, van Damme P (2006) Patterns of genetic and morphometric diversity in baobab (Adansonia digitata) populations across different climatic zones of Benin (West Africa). Ann Bot 97: 819-830.
2. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Am J Hum Genet 19: 233-257.
3. Clement C (1999) 1492 and the loss of amazonian crop genetic resources. ii. crop Biogeography at contact. Econ Bot 53: 203-216.
4. Coart E, Glabeke SV, Petit RJ, Bockstaele EV, Roldán-Ruiz I (2005) Range wide versus local patterns of genetic diversity in hornbeam (Carpinus betulus L.). Conserv Genet 6: 259-273.
5. Codjia JTC, Assogbadjo AE, Ekué MRM (2003) Diversité et valorisation au niveau local des ressources végétales forestières alimentaires du Bénin. Cahiers Agricultures 12: 321-331.
6. Collevatti RG, Grattapaglia D, Hay JD (2001) Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci. Mol Ecol 10: 349-356.
7. Crouch JH, Crouch HK, Constandt H, van Gysel A, Breyne P, van Montagu M, Jarret RL, Ortiz R (1999) Comparison of PCR-based molecular marker analyses of Musa breeding populations. Mol Breeding 5: 233-244.
8. Dawson I, Hollingsworth P, Doyle J, Kresovich S, Weber J, Sotelo Montes C, Pennington T, Pennington R (2008) Origins and genetic conservation of tropical trees in agroforestry systems: a case study from the Peruvian Amazon. Conserv Genet 9: 361-372.
9. Deguilloux MF, Dumolin-Lapègue S, Gielly L, Grivet D, Petit RJ (2003) A set of primers for the amplification of chloroplast microsatellites in Quercus. Mol Ecol Notes 3: 24-27.
10. Dossou MKR, Codjia JTC, Biaou G (2004) Rôle de la ressource forestière Blighia sapida (ackee ou faux acajou) dans l'économie des ménages du Nord-Ouest du Bénin. Bulletin de la Recherche Agronomique du Bénin 46: 33-41.
11. Dutech C, Joly HI, Jarne P (2004) Gene flow, historical population dynamics and genetic diversity within French Guianan populations of a rainforest tree species, Vouacapoua americana. Heredity 92: 69-77.
12. Ekué MRM, Assogbadjo AE, Mensah GA, Codjia JTC (2004) Aperçu sur la distribution écologique et le système agroforestier traditionnel autour de l'ackée (Blighia sapida) en milieu soudanien au Nord Bénin. Bulletin de la Recherche Agronomique du Bénin 44: 34-44.
13. Ekué MRM, Gailing O, Finkeldey R (2009a) Transferability of Simple Sequence Repeat (SSR) Markers Developed in Litchi chinensis to Blighia sapida (Sapindaceae). Plant Molecular Biology Reporter 27: 570-574.
14. Ekué MRM, Gailing O, Finkeldey R, Eyog-Matig O (2009b) Indigenous knowledge, traditional management and genetic diversity of the endogenous agroforestry species ackee (Blighia sapida) in Benin. Acta Hortic 806: 655-661.
15. Ekué MRM, Sinsin B, Eyog-Matig O, Finkeldey R (2010) Uses, traditional management, perception of variation and preferences in ackee (Blighia sapida K. D. Koenig) fruit traits in Benin: implications for domestication and conservation. J Ethnobiol Ethnomed 6: 12.
16. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L) Skeels] endemic to Morocco. Theor Appl Genet 92: 832-839.
17. Emshwiller E, Theim T, Grau A, Nina V, Terrazas F (2009) Origins of domestication and polyploidy in oca (Oxalis tuberosa; Oxalidaceae). 3. AFLP data of oca and four wild, tuber-bearing taxa. American Journal of Botany 96: 1839-1848.
18. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of Molecular Variance Inferred from Metric Distances among DNA Haplotypes - Application to Human Mitochondrial-DNA Restriction Data. Genetics 131: 479-491.
19. Excoffier L, Laval G, Schneider S (2007) ARLEQUIN ver 3.11. An integrated software package for population genetics data analysis. Computational and Molecular Population Genetics Lab (CMPG), University of Berne, Switzerland. http://cmpg. unibe. ch/software/arlequin3. Accessed 15 November 2009.
20. Felsenstein J (1993) PHYLIP: phylogenetic inference package. Version. 3. 5. Department of Genetics, University of Washington, Seattle, USA.
21. Fontaine C, Lovett PN, Sanou H, Maley J, Bouvet JM (2004) Genetic diversity of the shea tree (Vitellaria paradoxa C. F. Gaertn), detected by RAPD and chloroplast microsatellite markers. Heredity 93: 639-648.
22. Gepts P (2004) Crop domestication as a long-term selection experiment. Plant Breeding Reviews 24: 1-44.
23. Goudet J (2001) FSTAT: A program to estimate and test gene diversities and fixation indices, (Version 2. 9. 3. 2). University of Lausanne, Switzerland.
24. Goudet J, Raymond M, deMeeus T, Rousset F (1996) Testing differentiation in diploid populations. Genetics 144: 1933-1940.
25. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis. http://www. mbio. ncsu. edu/BioEdit/bioedit. html. Accessed 15 November 2009.
26. Hamrick JL, Loveless MD (1989) The genetic structure of tropical tree populations: associations with reproductive biology. In: Bock JH, Linhart YB (eds) The evolutionary ecology of plants. Westview Press, Boulder, pp 129-146.
27. Hamrick JL, Godt MJW (1997) Allozyme diversity in cultivated crops. Crop Sci 37: 26-30.
28. Hamrick JL, Godt MJW, Sherman-Broyles SL (1992) Factors influencing levels of genetic diversity in woody plant species. New Forests 6: 95-124.
29. Hollingsworth PM, Dawson IK, Goodall-Copestake WP, Richardson JE, Weber JC, Sotelo Montes C, Pennington RT (2005) Do farmers reduce genetic diversity when they domesticate tropical trees? A case study from Amazonia. Mol Ecol 14: 497-501.
30. ICRAF (International Centre for Research in Agroforestry) (2009) Available from http://www. worldagroforestry. org/Sites/TreeDBS/aft/speciesPrinterFriendly. asp?Id=17953. (Accessed 15 November 2009).
31. Jamnadass R, Hanson J, Poole J, Hanotte O, Simons TJ, Dawson IK (2005) High differentiation among populations of the woody legume Sesbania sesban in sub-Saharan Africa: Implications for conservation and cultivation during germplasm introduction into agroforestry systems. For Ecol Manag 210: 225-238.
32. Kelly BA, Hardy O, Bouvet JM (2004) Temporal and spatial genetic structure of Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali. Mol Ecol 13: 1231-1240.
33. Langella O (1999) POPULATIONS 1. 2. 30 Population genetic software. http://bioinformatics. org/~tryphon/populations. Accessed 15 November 2009.
34. Lemes MR, Gribel R, Proctor J, Grattapaglia D (2003) Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation. Mol Ecol 12: 2875-2883.
35. Lewis PO, Zaykin D (2001) Genetic Data Analysis: Computer program for the analysis of allelic data. Version 1. 0 (d16c). Free program distributed by the authors over the internet from http://lewis. eeb. uconn. edu/lewishome/software. html. Accessed 15 November 2009.
36. Lhuillier E, Butaud J-F, Bouvet J-M (2006) Extensive clonality and strong differentiation in the insular pacific tree Santalum insulare: implications for its conservation. Ann Bot 98: 1061-1072.
37. Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Mol Ecol 3: 91-99.
38. Mantel N (1967) The Detection of Disease Clustering and a Generalized Regression Approach. Cancer Res 27: 209-220.
39. Miller AJ, Schaal BA (2006) Domestication and the distribution of genetic variation in wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea L. (Anacardiaceae). Mol Ecol 15: 1467-1480.
40. Muller F, Voccia M, Bâ A, Bouvet J (2009) Genetic diversity and gene flow in a Caribbean tree Pterocarpus officinalis Jacq.: a study based on chloroplast and nuclear microsatellites. Genetica 135: 185-198.
41. Mwase WF, Bjørnstad Å, Stedje B, Bokosi JM, Kwapata MB (2006) Genetic diversity of Uapaca kirkiana Muel. Årg. Populations as revealed by amplified fragment length polymorphisms (AFLPs). Afr J Biotechnol 5: 1205-1213.
42. Namkoong G (1989) Population genetics and the dynamics of conservation. In: Knutson L, Stoner AK (Eds). Biotic diversity and germplasm preservation, global imperatives. Kluwer Academic Publishers. ISBN 0-7923-0178-1. pp 161-181.
43. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
44. Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13: 1143-1155.
45. Nybom H, Bartish IV (2000) Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspectives in Plant Ecology, Evolution and Systematics 3: 93-114.
46. Otero-Arnaiz A, Casas A, Hamrick JL, Cruse-Sanders J (2005) Genetic variation and evolution of Polaskia chichipe (Cactaceae) under domestication in the Tehuacán Valley, central Mexico. Mol Ecol 14: 1603-1611.
47. Peakall R, Smouse PE (2006) GenAlEx 6.2: Genetic Analysis in Excel. Population genetic software for teaching and research. The Australian National University, Canberra, Australia. http://www. anu. edu. au/BoZo/GenAlEx/.
48. Pen M (Jamaica Information Service) (2006) Viable Ackee Industry must be Protected- BSJ Inspector. www. jis. gov. jm/agriculture/html/20060506T100000-0500_8777_JIS_VIABLE_ACKEE_INDUSTRY_MUST_BE_PROTECTED__BSJ_INSPECTOR. asp. Accessed 15 April 2009.
49. Petit RJ, El Mousadik A, Pons O (1998) Identifying Populations for Conservation on the Basis of Genetic Markers. Conserv Biol 12: 844-855.
50. Pickersgill B (2007) Domestication of Plants in the Americas: Insights from Mendelian and Molecular Genetics. Ann Bot 100: 925-940.
51. Rice WR (1989) Analysing tables of statistical test. Evolution 43: 223-225.
52. Rousset F (1996) Equilibrium Values of Measures of Population Subdivision for Stepwise Mutation Processes. Genetics 142: 1357-1362.
53. Runo MS, Muluvi GM, Odee DM (2004) Analysis of genetic structure in Melia volkensii (Gurke) populations using random amplified polymorphic DNA. Afr J Biotechnol 38: 421-425.
54. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467.
55. Sanou H, Lovett PN, Bouvet JM (2005) Comparison of quantitative and molecular variation in agroforestry populations of the shea tree (Vitellaria paradoxa C. F. Gaertn) in Mali. Mol Ecol 14: 2601-2610.
56. Sim CH, Mahani MC, Choong CY, Salma I (2005) Transferability of SSR markers from lychee (Litchi chinensis Sonn.) to pulasan (Nephelium ramboutan-ake L.). Fruits 60: 379-385.
57. Tanksley SD, McCouch SR (1997) Seed Banks and Molecular Maps: Unlocking Genetic Potential from the Wild. Science 277: 1063-1066.
58. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
59. Ueno S, Setsuko S, Kawahara T, Yoshimaru H (2005) Genetic diversity and differentiation of the endangered Japanese endemic tree Magnolia stellata using nuclear and chloroplast microsatellite markers. Conserv Genet 6: 563-574.
60. Vekemans X (2002) AFLP-SURV version 1. 0 Distributed by the author. Laboratoire de génétique et Ecologie Végétale, Univ. Libre de Bruxelles, Belgium.
61. Viruel MA, Hormaza JI (2004) Development, characterization and variability analysis of microsatellites in lychee (Litchi chinensis Sonn., Sapindaceae). Theor Appl Genet 108: 896-902.
62. Vos P, Hogers R, Bleeker M, Reijans M, Tvd Lee, Hornes M, Friters A, Pot J, Paleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
63. Weir BS, Cockerham CC (1984) Estimating F-Statistics for the Analysis of Population-Structure. Evolution 38: 1358-1370.
64. Weising K, Gardner RC (1999) A set of conserved PVR primers for the analysis of simple sequence repeat polymorphism in chloroplast genomes of dicotyledonous angiosperms. Genome 42: 9-19.
65. Woodhead M, Russell J, Squirrell J, Hollingsworth PM, Mackenzie K, Gibby M, Powell W (2005) Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Mol Ecol 14: 1681-1695.
66. Wright S (1978) Evolution and genetics of populations: Variability within and among natural populations, vol 4. University of Chicago Press, Chicago, USA.
67. Zhivotovsky LA (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Mol Ecol 8: 907-913.