Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali

Molecular Ecology

Volumn 13, Issue 5, 2004, Pages 1231-1240

  Kelly, Bokary Allaye ^a   Hardy, Olivier J ^b,d   Bouvet, Jean Marc ^c  

^a Institut d'Economie Rurale   (Mali)

^b UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

^c CIRAD   (France)

^d FUND FOR SCIENTIFIC RESEARCH   (Belgium)

Author keywords

Forest tree; Gene flow; Human impact; Inbreeding coefficient; Kinship coefficient; Microsatellite

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; COMPARATIVE STUDY; DEMOGRAPHY; FORESTRY; GENE FREQUENCY; GENETIC VARIABILITY; GENETICS; INBREEDING; MALI; MOLECULAR EVOLUTION; POPULATION GENETICS; SAPOTACEAE; TIME;

DEMOGRAPHY; EVOLUTION, MOLECULAR; FORESTRY; GENE FREQUENCY; GENETICS, POPULATION; INBREEDING; MALI; MICROSATELLITE REPEATS; SAPOTACEAE; TIME FACTORS; VARIATION (GENETICS);

EMBRYOPHYTA; SAPOTACEAE; VITELLARIA PARADOXA;

EID: 1942453372     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02144.x     Document Type: Article

References (48)

1. Aldrich PR, Hamrick JL, Chavarriaga P, Kochert G (1998) Microsatellite analysis of demographic genetic structure in fragmented populations of the tropical tree Symphonia globulifera. Molecular Ecology, 7, 933-944.
2. Alvarez-Buylla EA, Chaos A, Pinero D, Garay AA (1996) Demographic genetic of a pioneer tropical tree species: patch dynamics, seed dispersal, and seed banks. Evolution, 50, 1155-1166.
3. Austerlitz F, Mariette S, Machon N, Gouyon P-H, Godelle B (2000) Effects of colonization processes on genetic diversity: differences between annual plants and tree species. Genetics, 154, 1309-1321.
4. Bagnoud N, Schmithüsen F, Sorg J-P (1995) Les parcs à Karité et Néré au Sud-MALI. Analyse du Bilan économique des arbres associés aux cultures. Bois et Forêts Des Tropique, 244, 9-23.
5. Berg EE, Hamrick JL (1994) Spatial and genetic structure of two sand hills oaks: Quercus laevis and Quercus margaretta (Fagaceace). American Journal of Botany, 81, 7-14.
6. Billotte N, Lagoda PJL, Risterucci A-M, Baurens F-C (1999) Microsatellite enriched libraries: applied methodology for the development of SSR markers in tropical crops. Fruits, 54, 277-288.
7. Boffa JM (1998) Agroforestry Parklands Systems. FAO, Rome.
8. Bousquet J, Simon L, Lalonde M (1990) DNA amplification from vegetative and sexual tissues of trees using polymerase chain reaction. Canadian Journal of Forestry Research, 20, 254-257.
9. Cheliak WM, Wang J, Pitel JA (1988) Population structure and genetic diversity in tamarack, Larix laricina (Du Roi) K. Koch. Canadian Journal of Forestry Research, 18, 1318-1324.
10. Chung MG, Chung JM, Chung MY, Epperson BK (2000) Spatial genetic distribution of allozyme polymorphisms following clonal and sexual reproduction in populations of Rhus javanica (Anacardiaceae). Heredity, 84, 178-185.
11. Chung MG, Chung JM, Epperson BK (1999) Spatial genetic structure of allozyme polymorphisms within populations of Rhus trichocarpa (Anacardiaceae). Silvae Genetica, 48, 223-227.
12. Chung MG, Epperson BK (2000a) Clonal and spatial genetic structure in Eurya emarginata (Theaceae). Heredity, 84, 170-177.
13. Chung MG, Epperson BK (2000b) Spatial genetic structure of allozyme polymorphisms in a population of Eurya japonica (Theaceae). Silvae Genetica, 49, 1-4.
14. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001-2014.
15. Dewey SE, Heywood JS (1988) Spatial genetic structure in a population of Psychotria nervosa I. Distribution of genotypes. Evolution, 42, 834-838.
16. Doligez A, Joly H (1997) Genetic diversity and spatial structure within a natural stand of a tropical forest tree species, Carapa procera (Meliaceae), in French Guiana. Heredity, 79, 72-82.
17. Ennos RA (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity, 72, 250-259.
18. Epperson BK (1993) Recent advances in correlation analysis of spatial patterns of genetic variation. Evolutionary Biology, 27, 95-155.
19. Epperson BK, Alvarez-Buylla ER (1997) Limited seed dispersal and genetic structure in life stages of Cecropia obtusifolia. Evolution, 51, 275-282.
20. Geburek T, Tripp-Knowles P (1994) Genetic architecture in bur oak, Quercus macrocarpa (Fagaceae), inferred by means of spatial autocorrelation analysis. Plant Systematics and Evolution, 189, 63-74.
21. Goudet J (2001) FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices, Version 2.9.3. http://www.unil.ch/izea/ softwares/fstat.html.
22. Hall P, Chase MR, Bawa KS (1994) Low genetic variation but high population differentiation in a common tropical forest tree species. Conservation Biology, 8, 471-482.
23. Hamrick JL, Murawski DA, Nason JD (1993) Influence of seed dispersal mechanisms on the genetic structure of tropical tree populations. Vegetation, 107-108, 281-297.
24. Hardy OJ (2000) Structure spatiale de la variation géné tique et relations entre cytotypes dans des populations d'un complexe polyploïde: Centaurea jacea L. s.l. PhD thesis, Université Libre de Bruxelles, Brussels.
25. Hardy OJ, Vekemans X (2002) SPAGEDI 1.0 Freeware Program for Spatial Pattern Analysis of Genetic Diversity. Université Libre de Bruxelles.
26. Hossaert-Mckey M, Valero M, Magda D, Jarry M, Cuguen J, Vernet P (1996) The evolving history of a population of Lathyrus sylvestris. Evidence from temporal and spatial genetic structure. Evolution, 50, 1808-1821.
27. Isagi Y, Kanazashi T, Suzuki W, Tanaka H, Abe T (2000) Microsatellite analysis of the regeneration process of Magnolia obovata Thunb. Heredity, 84, 143-151.
28. Kitamura K, Shimada K, Nakashyma K, Kawano S (1997a) Demographic genetics of the Japanese beech, Fagus crenata, at Ogowa Forest Preserve, Ibaraki, Central Honshu, Japan. I. Spatial genetic structuring in local populations. Plant Species Biology, 12, 107-135.
29. Kitamura K, Shimada K, Nakashyma K, Kawano S (1997b) Demographic genetics of the Japanese beech, Fagus crenata, at Ogowa Forest Preserve, Ibaraki, Central Honshu, Japan. II. Genetic structuring among size-classes in local populations. Plant Species Biology, 12, 137-155.
30. Knowles P, Perry DJ, Foster HA (1992) Spatial genetic structure in two tamarack (Larix laricina) populations with differing establishment histories. Evolution, 46, 572-576.
31. Ledig FT (1986) Heterozygosity, heterosis, and fitness in outbreeding plants. In: Conservation Biology (ed. Soulé ME), pp. 77-104. Sinauer Associates, Sunderland, MA.
32. Leonardi S, Raddi S, Borghetti M (1996) Spatial autocorrelation in a Norway spruce (Picea abies) population. Canadian Journal of Forestry Research, 26, 63-71.
33. Levin DA, Kerster HW (1974) Gene flow in seed plants. Evolutionary Biology, 7, 139-220.
34. Loiselle BA, Sork VL, Nason J, Graham C (1995) Spatial genetic structure of a tropical understoty shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany, 82, 1420-1425.
35. Michalakis Y, Excoffier L (1996) A genetic estimation of population subdivision using distances between alleles with special reference for microsatellite loci. Genetics, 142, 1061-1064.
36. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
37. Perry DJ, Knowles P (1991) Spatial genetic structure within three sugar maple (Acer saccharum Marsh) stands. Heredity, 66, 137-142.
38. Petit RJ (2001) Chloroplast DNA variation in European white oaks. Phylogeography and patterns of diversity based on data from over 2600 populations. Forest Ecology and Management, 5692, 1-22.
39. Petit RJ, El Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855.
40. Ritland K (1996) Estimators for pairwise relatedness and individual inbreeding coefficients. Genetical Research, 67, 175-185.
41. Schaal BA (1980) Measure of gene flow in Lupinus texensis. Nature, 284, 450-451.
42. Schnabel AR, Laushiman RH, Hamrick JL (1991) Comparative genetic structure of two co-occuring tree species, Maclura pomifera (Moraceae) and Gleditsia triacanthos (Leguminoseae). Heredity, 67, 357-364.
43. Sokal RR, Oden NL (1978) Spatial autocorrelation in biology; 2. Some biological implication and applications of evolutionary and ecological interest. Biology Journal of Linnaean Society, 10, 229-249.
44. Soo Oh G, Kang SS, Chung MG (1996) Temporal genetic structure in Camellia japonica (Theaceae). Genes and Genetic System, 71, 9-13.
45. Streiff R, Labbe T, Bacilieri R, Steinkellner H, Glössl H, Kremer A (1998) Within-population genetic structure in Quercus robur L. & Quercus petraea (Matt.) Liebl. assessed with isozymes and microsatellites. Molecular Ecology, 7, 317-328.
46. Ueno S, Tomaru N, Yoshimaru H, Manabe T, Yamamoto S (2002) Size class differences in genetic structure and individual distribution of Camellia japonica L. in a Japanese old-growth evergreen forest. Heredity, 89, 120-126.
47. Waser NM (1987) Spatial genetic heterogeneity in a population of the mountain perennial plant Delphinium nelsonii. Heredity, 58, 249-256.
48. Young AC, Merriam HG (1994) Effect of forest fragmentation on the spatial genetic structure of Acer saccharum Marsh. (sugar maple) populations. Heredity, 72, 201-208.