-
1
-
-
0023500817
-
The Shared Epitope Hypothesis. An Approach to Understanding the Molecular Genetics of Susceptibility to Rheumatoid Arthritis
-
Gregersen PK, Silver J, Winchester RJ, (1987) The Shared Epitope Hypothesis. An Approach to Understanding the Molecular Genetics of Susceptibility to Rheumatoid Arthritis. Arthritis Rheum 30: 1205-1213.
-
(1987)
Arthritis Rheum
, vol.30
, pp. 1205-1213
-
-
Gregersen, P.K.1
Silver, J.2
Winchester, R.J.3
-
2
-
-
0018830639
-
Immunisation Against Heterologous Type II Collagen Induces Arthritis in Mice
-
Courtenay JS, Dallman MJ, Dayan AD, Martin A, Mosedale B, (1980) Immunisation Against Heterologous Type II Collagen Induces Arthritis in Mice. Nature 283: 666-668.
-
(1980)
Nature
, vol.283
, pp. 666-668
-
-
Courtenay, J.S.1
Dallman, M.J.2
Dayan, A.D.3
Martin, A.4
Mosedale, B.5
-
3
-
-
0019512029
-
Type II Collagen-Induced Arthritis in Mice. I. Major Histocompatibility Complex (I Region) Linkage and Antibody Correlates
-
Wooley PH, Luthra HS, Stuart JM, David CS, (1981) Type II Collagen-Induced Arthritis in Mice. I. Major Histocompatibility Complex (I Region) Linkage and Antibody Correlates. J Exp Med 154: 688-700.
-
(1981)
J Exp Med
, vol.154
, pp. 688-700
-
-
Wooley, P.H.1
Luthra, H.S.2
Stuart, J.M.3
David, C.S.4
-
4
-
-
0028335791
-
Expression of a Transgenic Class II Ab Gene Confers Susceptibility to Collagen-Induced Arthritis
-
Brunsberg U, Gustafsson K, Jansson L, Michaëlsson E, Ährlund-Richter L, et al. (1994) Expression of a Transgenic Class II Ab Gene Confers Susceptibility to Collagen-Induced Arthritis. Eur J Immunol 24: 1698-1702.
-
(1994)
Eur J Immunol
, vol.24
, pp. 1698-1702
-
-
Brunsberg, U.1
Gustafsson, K.2
Jansson, L.3
Michaëlsson, E.4
Ährlund-Richter, L.5
-
5
-
-
0036919338
-
Glycosylation of Type II Collagen is of Major Importance for T Cell Tolerance and Pathology in Collagen-Induced Arthritis
-
Bäcklund J, Treschow A, Bockermann R, Holm B, Holm L, et al. (2002) Glycosylation of Type II Collagen is of Major Importance for T Cell Tolerance and Pathology in Collagen-Induced Arthritis. Eur J Immunol 32: 3776-3784.
-
(2002)
Eur J Immunol
, vol.32
, pp. 3776-3784
-
-
Bäcklund, J.1
Treschow, A.2
Bockermann, R.3
Holm, B.4
Holm, L.5
-
6
-
-
31144450506
-
Therapeutic Vaccination of Active Arthritis with a Glycosylated Collagen Type II Peptide in Complex with MHC Class II Molecules
-
Dzhambazov B, Nandakumar KS, Kihlberg J, Fugger L, Holmdahl R, et al. (2006) Therapeutic Vaccination of Active Arthritis with a Glycosylated Collagen Type II Peptide in Complex with MHC Class II Molecules. J Immunol 176: 1525-1533.
-
(2006)
J Immunol
, vol.176
, pp. 1525-1533
-
-
Dzhambazov, B.1
Nandakumar, K.S.2
Kihlberg, J.3
Fugger, L.4
Holmdahl, R.5
-
7
-
-
0037162490
-
Predominant Selection of T Cells Specific for the Glycosylated Collagen Type II Epitope (263-270) in Humanized Transgenic Mice and in Rheumatoid Arthritis
-
Bäcklund J, Carlsen S, Höger T, Holm B, Fugger L, et al. (2002) Predominant Selection of T Cells Specific for the Glycosylated Collagen Type II Epitope (263-270) in Humanized Transgenic Mice and in Rheumatoid Arthritis. Proc Natl Acad Sci USA 99: 9960-9965.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 9960-9965
-
-
Bäcklund, J.1
Carlsen, S.2
Höger, T.3
Holm, B.4
Fugger, L.5
-
8
-
-
12244254502
-
Glycopeptide specificity of helper T cells obtained in mouse models for rheumatoid arthritis
-
Holm B, Bäcklund J, Recio MAF, Holmdahl R, Kihlberg J, (2002) Glycopeptide specificity of helper T cells obtained in mouse models for rheumatoid arthritis. ChemBioChem 3: 1209-1222.
-
(2002)
ChemBioChem
, vol.3
, pp. 1209-1222
-
-
Holm, B.1
Bäcklund, J.2
Recio, M.A.F.3
Holmdahl, R.4
Kihlberg, J.5
-
9
-
-
0030601344
-
Identification of MHC Class II and TCR Binding Residues in the Type II Collagen Immunodominant Determinant Mediating Collagen-Induced Arthritis
-
Rosloniec EF, Whittington KB, Brand DD, Myers LK, Stuart JM, (1996) Identification of MHC Class II and TCR Binding Residues in the Type II Collagen Immunodominant Determinant Mediating Collagen-Induced Arthritis. Cell Immunol 172: 21-28.
-
(1996)
Cell Immunol
, vol.172
, pp. 21-28
-
-
Rosloniec, E.F.1
Whittington, K.B.2
Brand, D.D.3
Myers, L.K.4
Stuart, J.M.5
-
10
-
-
15444342696
-
The Structural Basis of MHC Control of Collagen-Induced Arthritis; Binding of the Immunodominant Type II Collagen 256-270 Glycopeptide to H-2Aq and H-2Ap Molecules
-
Kjellén P, Brunsberg U, Broddefalk J, Hansen B, Vestberg M, et al. (1998) The Structural Basis of MHC Control of Collagen-Induced Arthritis; Binding of the Immunodominant Type II Collagen 256-270 Glycopeptide to H-2Aq and H-2Ap Molecules. Eur J Immunol 28: 755-767.
-
(1998)
Eur J Immunol
, vol.28
, pp. 755-767
-
-
Kjellén, P.1
Brunsberg, U.2
Broddefalk, J.3
Hansen, B.4
Vestberg, M.5
-
11
-
-
0032511415
-
T Cells Recognize a Glycopeptide Derived from Type II Collagen in a Model for Rheumatoid Arthritis
-
Broddefalk J, Bäcklund J, Almqvist F, Johansson M, Holmdahl R, et al. (1998) T Cells Recognize a Glycopeptide Derived from Type II Collagen in a Model for Rheumatoid Arthritis. J Am Chem Soc 120: 7676-7683.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 7676-7683
-
-
Broddefalk, J.1
Bäcklund, J.2
Almqvist, F.3
Johansson, M.4
Holmdahl, R.5
-
12
-
-
0027273316
-
A synthetic peptide analog of a determinant of type-II collagen prevents the onset of collagen-induced arthritis
-
Myers LK, Rosloniec EF, Seyer JM, Stuart JM, Kang AH, (1993) A synthetic peptide analog of a determinant of type-II collagen prevents the onset of collagen-induced arthritis. J Immunol 150: 4652-4658.
-
(1993)
J Immunol
, vol.150
, pp. 4652-4658
-
-
Myers, L.K.1
Rosloniec, E.F.2
Seyer, J.M.3
Stuart, J.M.4
Kang, A.H.5
-
13
-
-
33746067093
-
Side-Chain and Backbone Amide Bond Requirements for Glycopeptide Stimulation of T-Cells Obtained in a Mouse Model for Rheumatoid Arthritis
-
Holm L, Bockermann R, Wellner E, Bäcklund J, Holmdahl R, et al. (2006) Side-Chain and Backbone Amide Bond Requirements for Glycopeptide Stimulation of T-Cells Obtained in a Mouse Model for Rheumatoid Arthritis. Bioorg Med Chem 14: 5921-5932.
-
(2006)
Bioorg Med Chem
, vol.14
, pp. 5921-5932
-
-
Holm, L.1
Bockermann, R.2
Wellner, E.3
Bäcklund, J.4
Holmdahl, R.5
-
14
-
-
36148963636
-
Probing molecular interactions within class II MHC A(q)/Glycopeptide/T-cell receptor complexes associated with collagen-induced arthritis
-
Andersson IE, Dzhambazov B, Holmdahl R, Linusson A, Kihlberg J, (2007) Probing molecular interactions within class II MHC A(q)/Glycopeptide/T-cell receptor complexes associated with collagen-induced arthritis. J Med Chem 50: 5627-5643.
-
(2007)
J Med Chem
, vol.50
, pp. 5627-5643
-
-
Andersson, I.E.1
Dzhambazov, B.2
Holmdahl, R.3
Linusson, A.4
Kihlberg, J.5
-
15
-
-
77953782524
-
Oxazole-modified glycopeptides that target arthritis-associated class II MHC Aq and DR4 proteins
-
Andersson IE, Batsalova T, Dzhambazov B, Edvinsson L, Holmdahl R, et al. (2010) Oxazole-modified glycopeptides that target arthritis-associated class II MHC Aq and DR4 proteins. Org Biomol Chem 8: 2931-2940.
-
(2010)
Org Biomol Chem
, vol.8
, pp. 2931-2940
-
-
Andersson, I.E.1
Batsalova, T.2
Dzhambazov, B.3
Edvinsson, L.4
Holmdahl, R.5
-
16
-
-
0032560526
-
Definition of MHC and T Cell Receptor Contacts in the HLA-DR4-Restricted Immunodominant Epitope in Type II Collagen and Characterization of Collagen-Induced Arthritis in HLA-DR4 and Human CD4 Transgenic Mice
-
Andersson EC, Hansen BE, Jacobsen H, Madsen LS, Andersen CB, et al. (1998) Definition of MHC and T Cell Receptor Contacts in the HLA-DR4-Restricted Immunodominant Epitope in Type II Collagen and Characterization of Collagen-Induced Arthritis in HLA-DR4 and Human CD4 Transgenic Mice. Proc Natl Acad Sci USA 95: 7574-7579.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 7574-7579
-
-
Andersson, E.C.1
Hansen, B.E.2
Jacobsen, H.3
Madsen, L.S.4
Andersen, C.B.5
-
17
-
-
0242581740
-
Exploration of the P6/P7 region of the peptide-binding site of the human class II major histocompatability complex protein HLA-DR1
-
Zavala-Ruiz Z, Sundberg EJ, Stone JD, DeOliveira DB, Chan IC, et al. (2003) Exploration of the P6/P7 region of the peptide-binding site of the human class II major histocompatability complex protein HLA-DR1. J Biol Chem 278: 44904-44912.
-
(2003)
J Biol Chem
, vol.278
, pp. 44904-44912
-
-
Zavala-Ruiz, Z.1
Sundberg, E.J.2
Stone, J.D.3
DeOliveira, D.B.4
Chan, I.C.5
-
18
-
-
0033552280
-
Design and synthesis of a competent pyrrolinone-peptide hybrid ligand for the class II major histocompatibility complex protein HLA-DR1
-
Smith AB, Benowitz AB, Sprengeler PA, Barbosa J, Guzman MC, et al. (1999) Design and synthesis of a competent pyrrolinone-peptide hybrid ligand for the class II major histocompatibility complex protein HLA-DR1. J Am Chem Soc 121: 9286-9298.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 9286-9298
-
-
Smith, A.B.1
Benowitz, A.B.2
Sprengeler, P.A.3
Barbosa, J.4
Guzman, M.C.5
-
19
-
-
0036009892
-
Major histocompatibility complex class II binding characteristics of peptoid-peptide hybrids
-
de Haan EC, Wauben MHM, Grosfeld-Stulemeyer MC, Kruijtzer JAW, Liskamp RMJ, et al. (2002) Major histocompatibility complex class II binding characteristics of peptoid-peptide hybrids. Bioorg Med Chem 10: 1939-1945.
-
(2002)
Bioorg Med Chem
, vol.10
, pp. 1939-1945
-
-
de Haan, E.C.1
Wauben, M.H.M.2
Grosfeld-Stulemeyer, M.C.3
Kruijtzer, J.A.W.4
Liskamp, R.M.J.5
-
20
-
-
10344230928
-
Limited plasticity in T cell recognition of modified T cell receptor contact residues in MHC class II bound peptides
-
de Haan EC, Wagenaar-Hilbers JPA, Liskamp RMJ, Moret EE, Wauben MHM, (2005) Limited plasticity in T cell recognition of modified T cell receptor contact residues in MHC class II bound peptides. Mol Immunol 42: 355-364.
-
(2005)
Mol Immunol
, vol.42
, pp. 355-364
-
-
de Haan, E.C.1
Wagenaar-Hilbers, J.P.A.2
Liskamp, R.M.J.3
Moret, E.E.4
Wauben, M.H.M.5
-
21
-
-
0030594982
-
Design of MHC class II (DR4) ligands using conformationally restricted imino acids at p3 and p5
-
Hanson GJ, Vuletich JL, Bedell LJ, Bono CP, Howard SC, et al. (1996) Design of MHC class II (DR4) ligands using conformationally restricted imino acids at p3 and p5. Bioorg Med Chem Lett 6: 1931-1936.
-
(1996)
Bioorg Med Chem Lett
, vol.6
, pp. 1931-1936
-
-
Hanson, G.J.1
Vuletich, J.L.2
Bedell, L.J.3
Bono, C.P.4
Howard, S.C.5
-
22
-
-
0034214403
-
Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures
-
Bolin DR, Swain AL, Sarabu R, Berthel SJ, Gillespie P, et al. (2000) Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures. J Med Chem 43: 2135-2148.
-
(2000)
J Med Chem
, vol.43
, pp. 2135-2148
-
-
Bolin, D.R.1
Swain, A.L.2
Sarabu, R.3
Berthel, S.J.4
Gillespie, P.5
-
23
-
-
34547582297
-
Ligand design by a combinatorial approach based on modeling and experiment: application to HLA-DR4
-
Evensen E, Joseph-McCarthy D, Weiss GA, Schreiber SL, Karplus M, (2007) Ligand design by a combinatorial approach based on modeling and experiment: application to HLA-DR4. J Comput-Aided Mol Des 21: 395-418.
-
(2007)
J Comput-Aided Mol Des
, vol.21
, pp. 395-418
-
-
Evensen, E.1
Joseph-McCarthy, D.2
Weiss, G.A.3
Schreiber, S.L.4
Karplus, M.5
-
24
-
-
0033523959
-
Predicting binding affinities of protein ligands from three-dimensional models: Application to peptide binding to class I major histocompatibility proteins
-
Rognan D, Lauemøller SL, Holm A, Buus S, Tschinke V, (1999) Predicting binding affinities of protein ligands from three-dimensional models: Application to peptide binding to class I major histocompatibility proteins. J Med Chem 42: 4650-4658.
-
(1999)
J Med Chem
, vol.42
, pp. 4650-4658
-
-
Rognan, D.1
Lauemøller, S.L.2
Holm, A.3
Buus, S.4
Tschinke, V.5
-
25
-
-
3142745414
-
Structural mining: Self-consistent design on flexible protein-peptide docking and transferable binding affinity potential
-
Liu ZJ, Dominy BN, Shakhnovich EI, (2004) Structural mining: Self-consistent design on flexible protein-peptide docking and transferable binding affinity potential. J Am Chem Soc 126: 8515-8528.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 8515-8528
-
-
Liu, Z.J.1
Dominy, B.N.2
Shakhnovich, E.I.3
-
26
-
-
4344589929
-
Modeling the structure of bound peptide ligands to major histocompatibility complex
-
Tong JC, Tan TW, Ranganathan S, (2004) Modeling the structure of bound peptide ligands to major histocompatibility complex. Protein Sci 13: 2523-2532.
-
(2004)
Protein Sci
, vol.13
, pp. 2523-2532
-
-
Tong, J.C.1
Tan, T.W.2
Ranganathan, S.3
-
27
-
-
26944484425
-
Modeling ligand-receptor interaction for some MHC class IIHLA-DR4 peptide mimetic inhibitors using several molecular docking and 3D QSAR techniques
-
Wei HY, Tsai KC, Lin TH, (2005) Modeling ligand-receptor interaction for some MHC class IIHLA-DR4 peptide mimetic inhibitors using several molecular docking and 3D QSAR techniques. J Chem Inf Model 45: 1343-1351.
-
(2005)
J Chem Inf Model
, vol.45
, pp. 1343-1351
-
-
Wei, H.Y.1
Tsai, K.C.2
Lin, T.H.3
-
28
-
-
0032248238
-
Statistical molecular design of peptoid libraries
-
Linusson A, Wold S, Nordén B, (1998) Statistical molecular design of peptoid libraries. Mol Diversity 4: 103-114.
-
(1998)
Mol Diversity
, vol.4
, pp. 103-114
-
-
Linusson, A.1
Wold, S.2
Nordén, B.3
-
29
-
-
13944271829
-
Multivariate design, synthesis, and biological evaluation of peptide inhibitors of FimC/FimH protein-protein interactions in uropathogenic Escherichia coli
-
Larsson A, Johansson SMC, Pinkner JS, Hultgren SJ, Almqvist F, et al. (2005) Multivariate design, synthesis, and biological evaluation of peptide inhibitors of FimC/FimH protein-protein interactions in uropathogenic Escherichia coli. J Med Chem 48: 935-945.
-
(2005)
J Med Chem
, vol.48
, pp. 935-945
-
-
Larsson, A.1
Johansson, S.M.C.2
Pinkner, J.S.3
Hultgren, S.J.4
Almqvist, F.5
-
30
-
-
37349063385
-
Design, synthesis and evaluation of peptide inhibitors of Mycobacterium tuberculosis ribonucleotide reductase
-
Nurbo J, Roos AK, Muthas D, Wahlström E, Ericsson DJ, et al. (2007) Design, synthesis and evaluation of peptide inhibitors of Mycobacterium tuberculosis ribonucleotide reductase. J Pept Sci 13: 822-832.
-
(2007)
J Pept Sci
, vol.13
, pp. 822-832
-
-
Nurbo, J.1
Roos, A.K.2
Muthas, D.3
Wahlström, E.4
Ericsson, D.J.5
-
31
-
-
34247575118
-
Quantitative Structure-Activity Relationship of Peptides Binding to the Class II Major Histocompatibility Complex Molecule Aq Associated with Autoimmune Arthritis
-
Holm L, Frech K, Dzhambazov B, Holmdahl R, Kihlberg J, et al. (2007) Quantitative Structure-Activity Relationship of Peptides Binding to the Class II Major Histocompatibility Complex Molecule Aq Associated with Autoimmune Arthritis. J Med Chem 50: 2049-2059.
-
(2007)
J Med Chem
, vol.50
, pp. 2049-2059
-
-
Holm, L.1
Frech, K.2
Dzhambazov, B.3
Holmdahl, R.4
Kihlberg, J.5
-
32
-
-
10444240315
-
Identification of the Minimal Glycopeptide Core Recognized by T Cells in a Model for Rheumatoid Arthritis
-
Holm L, Kjellén P, Holmdahl R, Kihlberg J, (2005) Identification of the Minimal Glycopeptide Core Recognized by T Cells in a Model for Rheumatoid Arthritis. Bioorg Med Chem 13: 473-482.
-
(2005)
Bioorg Med Chem
, vol.13
, pp. 473-482
-
-
Holm, L.1
Kjellén, P.2
Holmdahl, R.3
Kihlberg, J.4
-
33
-
-
79952654009
-
-
2.2.0, Openeye Scientific Software Inc. 3600 Cerrillos Road, Suite 1107, Santa Fe, NM 87507
-
OMEGA (2007) 2.2.0. Openeye Scientific Software Inc. 3600 Cerrillos Road, Suite 1107, Santa Fe, NM 87507.
-
(2007)
OMEGA
-
-
-
34
-
-
79952673716
-
-
2.2.3, Openeye Scientific Software Inc. 3600 Cerrillos Road, Suite 1107, Santa Fe, NM 87507
-
FRED (2007) 2.2.3. Openeye Scientific Software Inc. 3600 Cerrillos Road, Suite 1107, Santa Fe, NM 87507.
-
(2007)
FRED
-
-
-
36
-
-
33746921247
-
Comparative performance assessment of the conformational model generators omega and catalyst: A large-scale survey on the retrieval of protein-bound ligand conformations
-
Kirchmair J, Wolber G, Laggner C, Langer T, (2006) Comparative performance assessment of the conformational model generators omega and catalyst: A large-scale survey on the retrieval of protein-bound ligand conformations. J Chem Inf Model 46: 1848-1861.
-
(2006)
J Chem Inf Model
, vol.46
, pp. 1848-1861
-
-
Kirchmair, J.1
Wolber, G.2
Laggner, C.3
Langer, T.4
-
37
-
-
79952671551
-
-
2008.10, Chemical Computing Group Inc. Suite 910 - 1010 Sherbrooke St. W, Montreal, Quebec, Canada H3A 2R7
-
MOE (2008) 2008.10. Chemical Computing Group Inc. Suite 910- 1010 Sherbrooke St. W, Montreal, Quebec, Canada H3A 2R7.
-
(2008)
MOE
-
-
-
38
-
-
0346665839
-
Gaussian Docking Functions
-
McGann MR, Almond HR, Nicholls A, Grant JA, Brown FK, (2003) Gaussian Docking Functions. Biopolymers 68: 76-90.
-
(2003)
Biopolymers
, vol.68
, pp. 76-90
-
-
McGann, M.R.1
Almond, H.R.2
Nicholls, A.3
Grant, J.A.4
Brown, F.K.5
-
39
-
-
0033670301
-
Deciphering Common Failures in Molecular Docking of Ligand-Protein Complexes
-
Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Arthurs S, et al. (2000) Deciphering Common Failures in Molecular Docking of Ligand-Protein Complexes. J Comput-Aided Mol Des 14: 731-751.
-
(2000)
J Comput-Aided Mol Des
, vol.14
, pp. 731-751
-
-
Verkhivker, G.M.1
Bouzida, D.2
Gehlhaar, D.K.3
Rejto, P.A.4
Arthurs, S.5
-
40
-
-
0031226772
-
Empirical scoring functions. 1. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
-
Eldridge MD, Murray CW, Auton TR, Paolini GV, Mee RP, (1997) Empirical scoring functions. 1. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes. J Comput-Aided Mol Des 11: 425-445.
-
(1997)
J Comput-Aided Mol Des
, vol.11
, pp. 425-445
-
-
Eldridge, M.D.1
Murray, C.W.2
Auton, T.R.3
Paolini, G.V.4
Mee, R.P.5
-
41
-
-
0035966871
-
Detailed Analysis of Scoring Functions for Virtual Screening
-
Stahl M, Rarey M, (2001) Detailed Analysis of Scoring Functions for Virtual Screening. J Med Chem 44: 1035-1042.
-
(2001)
J Med Chem
, vol.44
, pp. 1035-1042
-
-
Stahl, M.1
Rarey, M.2
-
42
-
-
79952678455
-
GOLD
-
3.1.1, The Cambridge Crystallographic Datacenter. 12 Union Road, Cambridge, CB2 1EZ, U.K
-
GOLD (2006) 3.1.1. The Cambridge Crystallographic Datacenter. 12 Union Road, Cambridge, CB2 1EZ, U.K.
-
(2006)
-
-
-
43
-
-
33748667774
-
Consensus scoring for protein-ligand interactions
-
Feher M, (2006) Consensus scoring for protein-ligand interactions. Drug Discov Today 11: 421-428.
-
(2006)
Drug Discov Today
, vol.11
, pp. 421-428
-
-
Feher, M.1
-
44
-
-
33244478322
-
Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes
-
Oda A, Tsuchida K, Takakura T, Yamaotsu N, Hirono S, (2006) Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes. J Chem Inf Model 46: 380-391.
-
(2006)
J Chem Inf Model
, vol.46
, pp. 380-391
-
-
Oda, A.1
Tsuchida, K.2
Takakura, T.3
Yamaotsu, N.4
Hirono, S.5
-
45
-
-
3042806401
-
A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance
-
Perola E, Walters WP, Charifson PS, (2004) A detailed comparison of current docking and scoring methods on systems of pharmaceutical relevance. Proteins: Struct, Funct, Bioinf 56: 235-249.
-
(2004)
Proteins: Struct, Funct, Bioinf
, vol.56
, pp. 235-249
-
-
Perola, E.1
Walters, W.P.2
Charifson, P.S.3
-
46
-
-
16644376474
-
Evaluation and Application of Multiple Scoring Functions for a Virtual Screening Experiment
-
Xing L, Hodgkin E, Liu Q, Sedlock D, (2004) Evaluation and Application of Multiple Scoring Functions for a Virtual Screening Experiment. J Comput-Aided Mol Des 18: 333-344.
-
(2004)
J Comput-Aided Mol Des
, vol.18
, pp. 333-344
-
-
Xing, L.1
Hodgkin, E.2
Liu, Q.3
Sedlock, D.4
-
47
-
-
33749260698
-
A critical assessment of docking programs and scoring functions
-
Warren GL, Andrews CW, Capelli AM, Clarke B, LaLonde J, et al. (2006) A critical assessment of docking programs and scoring functions. J Med Chem 49: 5912-5931.
-
(2006)
J Med Chem
, vol.49
, pp. 5912-5931
-
-
Warren, G.L.1
Andrews, C.W.2
Capelli, A.M.3
Clarke, B.4
LaLonde, J.5
-
48
-
-
0035811458
-
A new concept for multidimensional selection of ligand conformations (MultiSelect) and multidimensional scoring (MultiScore) of protein-ligand binding affinities
-
Terp GE, Johansen BN, Christensen IT, Jørgensen FS, (2001) A new concept for multidimensional selection of ligand conformations (MultiSelect) and multidimensional scoring (MultiScore) of protein-ligand binding affinities. J Med Chem 44: 2333-2343.
-
(2001)
J Med Chem
, vol.44
, pp. 2333-2343
-
-
Terp, G.E.1
Johansen, B.N.2
Christensen, I.T.3
Jørgensen, F.S.4
-
49
-
-
0346996357
-
Improving structure-based virtual screening by multivariate analysis of scoring data
-
Jacobsson M, Lidén P, Stjernschantz E, Boström H, Norinder U, (2003) Improving structure-based virtual screening by multivariate analysis of scoring data. J Med Chem 46: 5781-5789.
-
(2003)
J Med Chem
, vol.46
, pp. 5781-5789
-
-
Jacobsson, M.1
Lidén, P.2
Stjernschantz, E.3
Boström, H.4
Norinder, U.5
-
50
-
-
0016474029
-
D-Optimality for Regression Designs: A Review
-
St. John RC, Draper NR, (1975) D-Optimality for Regression Designs: A Review. Technometrics 17: 15-23.
-
(1975)
Technometrics
, vol.17
, pp. 15-23
-
-
John St., R.C.1
Draper, N.R.2
-
51
-
-
84952107777
-
A Simple Bayesian Modification of D-Optimal Designs to Reduce Dependence on an Assumed Model
-
DuMouchel W, Jones B, (1994) A Simple Bayesian Modification of D-Optimal Designs to Reduce Dependence on an Assumed Model. Technometrics 36: 37-47.
-
(1994)
Technometrics
, vol.36
, pp. 37-47
-
-
DuMouchel, W.1
Jones, B.2
-
54
-
-
79952677958
-
Evince
-
2.3.0, Umbio AB. Box 7980, 90719 Umeå, Sweden
-
Evince (2009) 2.3.0. Umbio AB. Box 7980, 90719 Umeå, Sweden.
-
(2009)
-
-
-
55
-
-
0028829466
-
D-optimal Designs
-
de Aguiar PF, Bourguignon B, Khots MS, Massart DL, Phan-Than-Luu R, (1995) D-optimal Designs. Chemom Intell Lab Syst 30: 199-210.
-
(1995)
Chemom Intell Lab Syst
, vol.30
, pp. 199-210
-
-
de Aguiar, P.F.1
Bourguignon, B.2
Khots, M.S.3
Massart, D.L.4
Phan-Than-Luu, R.5
-
56
-
-
79952681715
-
MODDE
-
8.0.2, Umetrics AB. Box 7960, Umeå, Sweden
-
MODDE (2008) 8.0.2. Umetrics AB. Box 7960, Umeå, Sweden.
-
(2008)
-
-
-
57
-
-
0001681052
-
The collinearity problem in linear-regression - the partial least-squares (Pls) approach to generalized Inverses
-
Wold S, Ruhe A, Wold H, Dunn WJ, (1984) The collinearity problem in linear-regression- the partial least-squares (Pls) approach to generalized Inverses. Siam J Sci Stat Comp 5: 735-743.
-
(1984)
Siam J Sci Stat Comp
, vol.5
, pp. 735-743
-
-
Wold, S.1
Ruhe, A.2
Wold, H.3
Dunn, W.J.4
-
59
-
-
0000174867
-
Model Validation by Permutation Tests: Applications to Variable Selection
-
Lindgren F, Hansen B, Karcher W, Sjöström M, Eriksson L, (1996) Model Validation by Permutation Tests: Applications to Variable Selection. J Chemom 10: 521-532.
-
(1996)
J Chemom
, vol.10
, pp. 521-532
-
-
Lindgren, F.1
Hansen, B.2
Karcher, W.3
Sjöström, M.4
Eriksson, L.5
-
60
-
-
0001299731
-
Multivariate QSAR Modelling of the Rate of Reductive Dehalogenation of Haloalkanes
-
Eriksson L, Verboom HH, Pejnenburg WJGM, (1996) Multivariate QSAR Modelling of the Rate of Reductive Dehalogenation of Haloalkanes. J Chemom 10: 483-492.
-
(1996)
J Chemom
, vol.10
, pp. 483-492
-
-
Eriksson, L.1
Verboom, H.H.2
Pejnenburg, W.J.G.M.3
-
61
-
-
79952687491
-
SIMCA-P+
-
12.0, Umetrics AB. Box 7960, Umeå, Sweden
-
SIMCA-P+ (2008) 12.0. Umetrics AB. Box 7960, Umeå, Sweden.
-
(2008)
-
-
-
62
-
-
49649086640
-
Analysis of key parameters for molecular dynamics of pMHC molecules
-
Omasits U, Knapp B, Neumann M, Steinhauser O, Stockinger H, et al. (2008) Analysis of key parameters for molecular dynamics of pMHC molecules. Mol Simul 34: 781-793.
-
(2008)
Mol Simul
, vol.34
, pp. 781-793
-
-
Omasits, U.1
Knapp, B.2
Neumann, M.3
Steinhauser, O.4
Stockinger, H.5
-
63
-
-
79952654942
-
Maestro,
-
9.1. Schrödinger, LLC, 120 West 45th Street, 17th Floor, Tower 45, New York, NY, 10036-4041
-
Maestro (2010) 9.1. Schrödinger, LLC. 120 West 45th Street, 17th Floor, Tower 45, New York, NY, 10036-4041.
-
(2010)
-
-
-
64
-
-
77954057644
-
Desmond Molecular Dynamics System
-
2.2, D. E. Shaw Research. New York, NY
-
Desmond Molecular Dynamics System (2010) 2.2. D. E. Shaw Research. New York, NY.
-
(2010)
-
-
-
65
-
-
34548283148
-
-
November 11-17 2006; Tampa, Florida, ACM Press, New York
-
Bowers KJ, Chow E, Xu H, Dror RO, Eastwood MP, et al. Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters November 11-17 2006; Tampa, Florida ACM Press, New York.
-
Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters
-
-
Bowers, K.J.1
Chow, E.2
Xu, H.3
Dror, R.O.4
Eastwood, M.P.5
-
67
-
-
2942562288
-
9-BBN as a convenient protecting group in functionalisation of hydroxylysine
-
Syed BM, Gustafsson T, Kihlberg J, (2004) 9-BBN as a convenient protecting group in functionalisation of hydroxylysine. Tetrahedron 60: 5571-5575.
-
(2004)
Tetrahedron
, vol.60
, pp. 5571-5575
-
-
Syed, B.M.1
Gustafsson, T.2
Kihlberg, J.3
-
68
-
-
0024118219
-
Noninvasive Continuous Monitoring of Solid-Phase Peptide-Synthesis by Acid-Base Indicator
-
Krchñák V, Vágner J, Lebl M, (1988) Noninvasive Continuous Monitoring of Solid-Phase Peptide-Synthesis by Acid-Base Indicator. Int J Pept Prot Res 32: 415-416.
-
(1988)
Int J Pept Prot Res
, vol.32
, pp. 415-416
-
-
Krchñák, V.1
Vágner, J.2
Lebl, M.3
-
69
-
-
0028316567
-
Exploration of requirements for peptide binding to HLA DRB1*0101 and DRB1*0401
-
Hill CM, Liu A, Marshall KW, Mayer J, Jorgensen B, et al. (1994) Exploration of requirements for peptide binding to HLA DRB1*0101 and DRB1*0401. J Immunol 152: 2890-2898.
-
(1994)
J Immunol
, vol.152
, pp. 2890-2898
-
-
Hill, C.M.1
Liu, A.2
Marshall, K.W.3
Mayer, J.4
Jorgensen, B.5
-
70
-
-
0031903794
-
Epitope Glycosylation Plays a Critical Role for T Cell Recognition of Type II Collagen in Collagen-Induced Arthritis
-
Corthay A, Bäcklund J, Broddefalk J, Michaëlsson E, Goldschmidt TJ, et al. (1998) Epitope Glycosylation Plays a Critical Role for T Cell Recognition of Type II Collagen in Collagen-Induced Arthritis. Eur J Immunol 28: 2580-2590.
-
(1998)
Eur J Immunol
, vol.28
, pp. 2580-2590
-
-
Corthay, A.1
Bäcklund, J.2
Broddefalk, J.3
Michaëlsson, E.4
Goldschmidt, T.J.5
-
71
-
-
0026642137
-
Identification of an immunodominant type-II collagen peptide recognized by T cells in H-2q mice: self tolerance at the level of determinant selection
-
Michaëlsson E, Andersson M, Holmdahl R, Engström Å, (1992) Identification of an immunodominant type-II collagen peptide recognized by T cells in H-2q mice: self tolerance at the level of determinant selection. Eur J Immunol 22: 1819-1825.
-
(1992)
Eur J Immunol
, vol.22
, pp. 1819-1825
-
-
Michaëlsson, E.1
Andersson, M.2
Holmdahl, R.3
Engström, Å.4
-
72
-
-
34547916016
-
Identification of an altered peptide ligand based on the endogenously presented, rheumatoid arthritis-associated, human cartilage glycoprotein-39(263-275) epitope: an MHC anchor variant peptide for immune modulation
-
Boots AMH, Hubers H, Kouwijzer M, Zandbrink LD, Westrek-Esselink BM, et al. (2007) Identification of an altered peptide ligand based on the endogenously presented, rheumatoid arthritis-associated, human cartilage glycoprotein-39(263-275) epitope: an MHC anchor variant peptide for immune modulation. Arthritis Res Ther pp. 9.
-
(2007)
Arthritis Res Ther
, pp. 9
-
-
Boots, A.M.H.1
Hubers, H.2
Kouwijzer, M.3
Zandbrink, L.D.4
Westrek-Esselink, B.M.5
-
73
-
-
0033052417
-
Peptidomimetic compounds that inhibit antigen presentation by autoimmune disease-associated class II major histocompatibility molecules
-
Falcioni F, Ito K, Vidovic D, Belunis C, Campbell R, et al. (1999) Peptidomimetic compounds that inhibit antigen presentation by autoimmune disease-associated class II major histocompatibility molecules. Nat Biotechnol 17: 562-567.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 562-567
-
-
Falcioni, F.1
Ito, K.2
Vidovic, D.3
Belunis, C.4
Campbell, R.5
-
74
-
-
0035284831
-
Structural and functional consequences of altering a peptide MHC anchor residue
-
Kersh GJ, Miley MJ, Nelson CA, Grakoui A, Horvath S, et al. (2001) Structural and functional consequences of altering a peptide MHC anchor residue. J Immunol 166: 3345-3354.
-
(2001)
J Immunol
, vol.166
, pp. 3345-3354
-
-
Kersh, G.J.1
Miley, M.J.2
Nelson, C.A.3
Grakoui, A.4
Horvath, S.5
-
75
-
-
0032194109
-
Characterization of a peptide analog of a determinant of type II collagen that suppresses collagen-induced arthritis
-
Myers LK, Tang B, Rosloniec EF, Stuart JM, Chiang TM, et al. (1998) Characterization of a peptide analog of a determinant of type II collagen that suppresses collagen-induced arthritis. J Immunol 161: 3589-3595.
-
(1998)
J Immunol
, vol.161
, pp. 3589-3595
-
-
Myers, L.K.1
Tang, B.2
Rosloniec, E.F.3
Stuart, J.M.4
Chiang, T.M.5
-
76
-
-
1642292846
-
Modification of peptide interaction with MHC creates TCR partial agonists
-
Ryan KR, McNeil LK, Dao C, Jensen PE, Evavold BD, (2004) Modification of peptide interaction with MHC creates TCR partial agonists. Cell Immunol 227: 70-78.
-
(2004)
Cell Immunol
, vol.227
, pp. 70-78
-
-
Ryan, K.R.1
McNeil, L.K.2
Dao, C.3
Jensen, P.E.4
Evavold, B.D.5
-
77
-
-
14844346786
-
Amelioration of established experimental autoimmune encephalomyelitis by an MHC anchor-substituted variant of proteolipid protein 139-151
-
Margot CD, Ford ML, Evavold BD, (2005) Amelioration of established experimental autoimmune encephalomyelitis by an MHC anchor-substituted variant of proteolipid protein 139-151. J Immunol 174: 3352-3358.
-
(2005)
J Immunol
, vol.174
, pp. 3352-3358
-
-
Margot, C.D.1
Ford, M.L.2
Evavold, B.D.3
-
78
-
-
0042847235
-
Regulation of polyclonal T cell responses by an MHC anchor-substituted variant of myelin oligodendrocyte glycoprotein 35-55
-
Ford ML, Evavold BD, (2003) Regulation of polyclonal T cell responses by an MHC anchor-substituted variant of myelin oligodendrocyte glycoprotein 35-55. J Immunol 171: 1247-1254.
-
(2003)
J Immunol
, vol.171
, pp. 1247-1254
-
-
Ford, M.L.1
Evavold, B.D.2
-
79
-
-
0035189754
-
Radically Altered T Cell Receptor Signaling in Glycopeptide-Specific T Cell Hybridoma Induced by Antigen with Minimal Differences in the Glycan Group
-
Jensen T, Nielsen M, Gad M, Hansen P, Komba S, et al. (2001) Radically Altered T Cell Receptor Signaling in Glycopeptide-Specific T Cell Hybridoma Induced by Antigen with Minimal Differences in the Glycan Group. Eur J Immunol 31: 3197-3206.
-
(2001)
Eur J Immunol
, vol.31
, pp. 3197-3206
-
-
Jensen, T.1
Nielsen, M.2
Gad, M.3
Hansen, P.4
Komba, S.5
-
80
-
-
0038082266
-
MUC1-derived glycopeptide libraries with improved MHC anchors are strong antigens and prime mouse T cells for proliferative responses to lysates of human breast cancer tissue
-
Gad M, Jensen T, Gagne R, Komba S, Daugaard S, et al. (2003) MUC1-derived glycopeptide libraries with improved MHC anchors are strong antigens and prime mouse T cells for proliferative responses to lysates of human breast cancer tissue. Eur J Immunol 33: 1624-1632.
-
(2003)
Eur J Immunol
, vol.33
, pp. 1624-1632
-
-
Gad, M.1
Jensen, T.2
Gagne, R.3
Komba, S.4
Daugaard, S.5
-
81
-
-
17344362313
-
Ligand recognition by αβ T cell receptors
-
Davis MM, Boniface JJ, Reich Z, Lyons D, Hampl J, et al. (1998) Ligand recognition by αβ T cell receptors. Annu Rev Immunol 16: 523-544.
-
(1998)
Annu Rev Immunol
, vol.16
, pp. 523-544
-
-
Davis, M.M.1
Boniface, J.J.2
Reich, Z.3
Lyons, D.4
Hampl, J.5
-
82
-
-
0028589333
-
Kinetics of T-Cell Receptor Binding to Peptide/I-Ek Complexes: Correlation of the Dissociation Rate with T-Cell Reponsiveness
-
Matsui K, Boniface JJ, Steffner P, Reay PA, Davis MM, (1994) Kinetics of T-Cell Receptor Binding to Peptide/I-Ek Complexes: Correlation of the Dissociation Rate with T-Cell Reponsiveness. Proc Natl Acad Sci USA 91: 12862-12866.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 12862-12866
-
-
Matsui, K.1
Boniface, J.J.2
Steffner, P.3
Reay, P.A.4
Davis, M.M.5
-
83
-
-
0003104975
-
A TCR Binds to Antagonist Ligands with Lower Affinities and Faster Dissociation Rates Than to Agonists
-
Lyons DS, Lieberman SA, Hampl J, Boniface JJ, Chien Y, et al. (1996) A TCR Binds to Antagonist Ligands with Lower Affinities and Faster Dissociation Rates Than to Agonists. Immunity 5: 53-61.
-
(1996)
Immunity
, vol.5
, pp. 53-61
-
-
Lyons, D.S.1
Lieberman, S.A.2
Hampl, J.3
Boniface, J.J.4
Chien, Y.5
-
84
-
-
0032438551
-
High- and Low-Potency Ligands with Similar Affinities for the TCR: The Importance of Kinetics in TCR Signaling
-
Kersh GJ, Kersh EN, Fremont DH, Allen PM, (1998) High- and Low-Potency Ligands with Similar Affinities for the TCR: The Importance of Kinetics in TCR Signaling. Immunity 9: 817-826.
-
(1998)
Immunity
, vol.9
, pp. 817-826
-
-
Kersh, G.J.1
Kersh, E.N.2
Fremont, D.H.3
Allen, P.M.4
-
85
-
-
69949178772
-
T cell receptor signaling induced by an analog peptide of type II collagen requires activation of Syk
-
Tang B, Zhou J, Park JE, Cullins D, Yi AK, et al. (2009) T cell receptor signaling induced by an analog peptide of type II collagen requires activation of Syk. Clin Immunol 133: 145-153.
-
(2009)
Clin Immunol
, vol.133
, pp. 145-153
-
-
Tang, B.1
Zhou, J.2
Park, J.E.3
Cullins, D.4
Yi, A.K.5
-
86
-
-
0036900514
-
Peptide-induced suppression of collagen-induced arthritis in HLA-DR1 transgenic mice
-
Myers LK, Sakurai Y, Tang B, He XW, Rosloniec EF, et al. (2002) Peptide-induced suppression of collagen-induced arthritis in HLA-DR1 transgenic mice. Arthritis and Rheum 46: 3369-3377.
-
(2002)
Arthritis and Rheum
, vol.46
, pp. 3369-3377
-
-
Myers, L.K.1
Sakurai, Y.2
Tang, B.3
He, X.W.4
Rosloniec, E.F.5
-
87
-
-
39049140507
-
Analog peptides of type II collagen can suppress arthritis in HLA-DR4 (DRB1*0401) transgenic mice
-
Sakurai Y, Brand DD, Tang B, Rosloniec EF, Stuart JM, et al. (2006) Analog peptides of type II collagen can suppress arthritis in HLA-DR4 (DRB1*0401) transgenic mice. Arthritis Res Ther pp. 8.
-
(2006)
Arthritis Res Ther
, pp. 8
-
-
Sakurai, Y.1
Brand, D.D.2
Tang, B.3
Rosloniec, E.F.4
Stuart, J.M.5
-
88
-
-
0030701632
-
X-Ray Crystal Structure of HLA-DR4 (DRA*0101, DRB1*0401) Complexed with a Peptide from Human Collagen II
-
Dessen A, Lawrence CM, Cupo S, Zaller DM, Wiley DC, (1997) X-Ray Crystal Structure of HLA-DR4 (DRA*0101, DRB1*0401) Complexed with a Peptide from Human Collagen II. Immunity 7: 473-481.
-
(1997)
Immunity
, vol.7
, pp. 473-481
-
-
Dessen, A.1
Lawrence, C.M.2
Cupo, S.3
Zaller, D.M.4
Wiley, D.C.5
|