-
2
-
-
0023496815
-
Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics.
-
Avise, J.C., Arnold, J., Ball, R.M. et al. (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics, 18, 489-522.
-
(1987)
Annual Review of Ecology and Systematics
, vol.18
, pp. 489-522
-
-
Avise, J.C.1
Arnold, J.2
Ball, R.M.3
-
3
-
-
0033999959
-
Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes.
-
Bensasson, D., Zhang, D.X. & Hewitt, G.M. (2000) Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes. Molecular Biology and Evolution, 17, 406-415.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 406-415
-
-
Bensasson, D.1
Zhang, D.X.2
Hewitt, G.M.3
-
4
-
-
0035358999
-
Mitochondrial pseudogenes: evolution's misplaced witnesses.
-
Bensasson, D., Zhang, D.X., Hartl, D. & Hewitt, G.M. (2001) Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends in Ecology and Evolution, 16, 314-321.
-
(2001)
Trends in Ecology and Evolution
, vol.16
, pp. 314-321
-
-
Bensasson, D.1
Zhang, D.X.2
Hartl, D.3
Hewitt, G.M.4
-
5
-
-
0029084867
-
Pervasive migration of organellar DNA to the nucleus in plants.
-
Blanchard, J.L. & Schmidt, G.W. (1995) Pervasive migration of organellar DNA to the nucleus in plants. Journal of Molecular Evolution, 41, 397-406.
-
(1995)
Journal of Molecular Evolution
, vol.41
, pp. 397-406
-
-
Blanchard, J.L.1
Schmidt, G.W.2
-
6
-
-
61449106586
-
COI-like sequences are becoming problematic in molecular systematic and DNA barcoding studies.
-
Buhay, J.E. (2009) COI-like sequences are becoming problematic in molecular systematic and DNA barcoding studies. Journal of Crustacean Biology, 29, 96-110.
-
(2009)
Journal of Crustacean Biology
, vol.29
, pp. 96-110
-
-
Buhay, J.E.1
-
7
-
-
0022139923
-
An Ubiquitous interspersed DNA sequence family in an insect.
-
Bradfield, J.Y., Locke, J. & Wyatt, G.R. (1985) An Ubiquitous interspersed DNA sequence family in an insect. DNA, 4, 357-363.
-
(1985)
DNA
, vol.4
, pp. 357-363
-
-
Bradfield, J.Y.1
Locke, J.2
Wyatt, G.R.3
-
8
-
-
33744756956
-
Problems with DNA barcodes for species delimitation: 'ten species' of Astraptes fulgerator reassessed (Lepidoptera: Hesperiidae).
-
Brower, A.V.Z. (2006) Problems with DNA barcodes for species delimitation: 'ten species' of Astraptes fulgerator reassessed (Lepidoptera: Hesperiidae). Systematics and Biodiversity, 4, 127-132.
-
(2006)
Systematics and Biodiversity
, vol.4
, pp. 127-132
-
-
Brower, A.V.Z.1
-
9
-
-
28344443620
-
Characterization and PCR multiplexing of polymorphic microsatellite loci for the locust Locusta migratoria.
-
Chapuis, M.P., Loiseau, A., Michalakis, Y., Lecoq, M. & Estoup, A. (2005) Characterization and PCR multiplexing of polymorphic microsatellite loci for the locust Locusta migratoria. Molecular Ecology Resources, 5, 554-557.
-
(2005)
Molecular Ecology Resources
, vol.5
, pp. 554-557
-
-
Chapuis, M.P.1
Loiseau, A.2
Michalakis, Y.3
Lecoq, M.4
Estoup, A.5
-
10
-
-
55249120740
-
Eight polymorphic microsatellite loci for the Australian plague locust, Chortoicetes terminifera.
-
Chapuis, M.P., Popple, J.A., Simpson, S.J. et al. (2008) Eight polymorphic microsatellite loci for the Australian plague locust, Chortoicetes terminifera. Molecular Ecology Resources, 8, 1414-1416.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 1414-1416
-
-
Chapuis, M.P.1
Popple, J.A.2
Simpson, S.J.3
-
11
-
-
0033771358
-
TCS: a computer program to estimate gene genealogies.
-
Clement, M., Posada, D. & Crandall, K. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
-
(2000)
Molecular Ecology
, vol.9
, pp. 1657-1660
-
-
Clement, M.1
Posada, D.2
Crandall, K.3
-
12
-
-
0029838624
-
PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases
-
Cline, J., Braman, J.C. & Hogrefe, H.H. (1996) PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases. Nucleic Acids Research, 15, 3546-3551.
-
(1996)
Nucleic Acids Research
, vol.15
, pp. 3546-3551
-
-
Cline, J.1
Braman, J.C.2
Hogrefe, H.H.3
-
13
-
-
0028837682
-
Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoids.
-
Collura, R.V. & Stewart, C.B. (1995) Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoids. Nature, 378, 485-489.
-
(1995)
Nature
, vol.378
, pp. 485-489
-
-
Collura, R.V.1
Stewart, C.B.2
-
14
-
-
0020661320
-
Rearranged mitochondrial genes in the yeast nuclear genome.
-
Farrelly, F. & Butow, R.A. (1983) Rearranged mitochondrial genes in the yeast nuclear genome. Nature, 301, 296-301.
-
(1983)
Nature
, vol.301
, pp. 296-301
-
-
Farrelly, F.1
Butow, R.A.2
-
15
-
-
0028029392
-
A rapid PCR fidelity assay.
-
Flaman, J.M., Frebourg, T., Moreau, V. et al. (1994) A rapid PCR fidelity assay. Nucleic Acids Research, 11, 3259-3260.
-
(1994)
Nucleic Acids Research
, vol.11
, pp. 3259-3260
-
-
Flaman, J.M.1
Frebourg, T.2
Moreau, V.3
-
16
-
-
0029619268
-
The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome.
-
Flook, P.K., Rowell, C.H.F. & Gellissen, G. (1995) The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome. Journal of Molecular Evolution, 41, 928-941.
-
(1995)
Journal of Molecular Evolution
, vol.41
, pp. 928-941
-
-
Flook, P.K.1
Rowell, C.H.F.2
Gellissen, G.3
-
17
-
-
65449158533
-
A molecular phylogenetic analysis of the Oedipodinae and their intercontinental relationships.
-
Fries, M., Chapco, W. & Contreras, D. (2007) A molecular phylogenetic analysis of the Oedipodinae and their intercontinental relationships. Journal of Orthoptera Research, 16, 115-125.
-
(2007)
Journal of Orthoptera Research
, vol.16
, pp. 115-125
-
-
Fries, M.1
Chapco, W.2
Contreras, D.3
-
19
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT.
-
Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
-
(1999)
Nucleic Acids Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
20
-
-
77649210966
-
Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes.
-
DOI: 10.1371/journal.pgen.1000834..
-
Hazkani-Covo, E., Zeller, R.M. & Martin, W. (2010) Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genetics, 6, H, DOI: 10.1371/journal.pgen.1000834..
-
(2010)
PLoS Genetics
, vol.6
-
-
Hazkani-Covo, E.1
Zeller, R.M.2
Martin, W.3
-
21
-
-
0037423543
-
Biological identifications through DNA barcodes.
-
Hebert, P.D.N., Cywinska, A., Ball, S. & deWaard, J. (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London Series B, 270, 313-321.
-
(2003)
Proceedings of the Royal Society of London Series B
, vol.270
, pp. 313-321
-
-
Hebert, P.D.N.1
Cywinska, A.2
Ball, S.3
deWaard, J.4
-
22
-
-
64049098891
-
Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies.
-
DOI: 10.1186/1471-2156-10-11..
-
Hlaing, T., Tun-Lin, W., Somboon, P. et al. (2009) Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies. BMC Genetics, 10, DOI: 10.1186/1471-2156-10-11..
-
(2009)
BMC Genetics
, vol.10
-
-
Hlaing, T.1
Tun-Lin, W.2
Somboon, P.3
-
23
-
-
0034849408
-
MRBAYES: bayesian inference of phylogenetic trees.
-
Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
24
-
-
0029909927
-
Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster.
-
Kumazawa, Y., Ota, H., Nishida, M. & Ozawa, T. (1996) Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. Molecular Biology and Evolution, 13, 1242-1254.
-
(1996)
Molecular Biology and Evolution
, vol.13
, pp. 1242-1254
-
-
Kumazawa, Y.1
Ota, H.2
Nishida, M.3
Ozawa, T.4
-
25
-
-
33751556464
-
Extensive variation in nuclear mitochondrial DNA content between the genomes of Phytophthora sojae and Phytophthora ramorum.
-
Krampis, K., Tyler, B.M. & Boore, J.L. (2006) Extensive variation in nuclear mitochondrial DNA content between the genomes of Phytophthora sojae and Phytophthora ramorum. Molecular Plant-Microbe Interactions, 19, 1329-1336.
-
(2006)
Molecular Plant-Microbe Interactions
, vol.19
, pp. 1329-1336
-
-
Krampis, K.1
Tyler, B.M.2
Boore, J.L.3
-
26
-
-
42949159834
-
DNA barcodes: genes, genomics, and bioinformatics.
-
Kress, W.J. & Erickson, D.L. (2008) DNA barcodes: genes, genomics, and bioinformatics. Proceedings of the National Academy of Sciences of the United States of America, 105, 2761-2762.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, pp. 2761-2762
-
-
Kress, W.J.1
Erickson, D.L.2
-
27
-
-
0037081814
-
High aggregate burden of somatic mtDNA point mutations in aging and alzheimer's disease brain.
-
Lin, M.T., Simon, D.K., Ahn, C.H., Kim, L.M. & Beal, M.F. (2002) High aggregate burden of somatic mtDNA point mutations in aging and alzheimer's disease brain. Human Molecular Genetics, 11, 133-145.
-
(2002)
Human Molecular Genetics
, vol.11
, pp. 133-145
-
-
Lin, M.T.1
Simon, D.K.2
Ahn, C.H.3
Kim, L.M.4
Beal, M.F.5
-
28
-
-
0028363062
-
Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat.
-
Lopez, J.V., Yuhki, N., Masuda, R., Modi, W. & O'Brien, S.J.O. (1994) Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. Journal of Molecular Evolution, 39, 174-190.
-
(1994)
Journal of Molecular Evolution
, vol.39
, pp. 174-190
-
-
Lopez, J.V.1
Yuhki, N.2
Masuda, R.3
Modi, W.4
O'Brien, S.J.O.5
-
29
-
-
0025788241
-
High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus.
-
Lundberg, K.S., Shoemaker, D.D., Adams, M.W., Short, J.M., Sorge, J.A. & Mathur, E.J. (1991) High-fidelity amplification using a thermostable DNA polymerase isolated from Pyrococcus furiosus. Gene, 108, 1-6.
-
(1991)
Gene
, vol.108
, pp. 1-6
-
-
Lundberg, K.S.1
Shoemaker, D.D.2
Adams, M.W.3
Short, J.M.4
Sorge, J.A.5
Mathur, E.J.6
-
30
-
-
44449171351
-
A universal DNA mini-barcode for biodiversity analysis.
-
DOI: 10.1186/1471-2164-9-214..
-
Meusnier, I., Singer, G.A.C., Landry, J.F., Hickey, D.A., Hebert, P.D.N. & Hajibabaei, M. (2008) A universal DNA mini-barcode for biodiversity analysis. BMC Genomics, 9, DOI: 10.1186/1471-2164-9-214..
-
(2008)
BMC Genomics
, vol.9
-
-
Meusnier, I.1
Singer, G.A.C.2
Landry, J.F.3
Hickey, D.A.4
Hebert, P.D.N.5
Hajibabaei, M.6
-
31
-
-
1042299965
-
Mitochondrial DNA-like sequences in the nucleus (NUMTs): Insights into our African origins and the mechanism of foreign DNA integration.
-
Mishmar, D., Ruiz-Pesini, E., Brandon, M. & Wallace, D. (2004) Mitochondrial DNA-like sequences in the nucleus (NUMTs): Insights into our African origins and the mechanism of foreign DNA integration. Human Mutation, 23, 125-133.
-
(2004)
Human Mutation
, vol.23
, pp. 125-133
-
-
Mishmar, D.1
Ruiz-Pesini, E.2
Brandon, M.3
Wallace, D.4
-
32
-
-
77954742750
-
Assessing the effects of primer specificity on eliminating numt coamplification in DNAbarcoding: a case study from Orthoptera (Arthropoda: Insecta).
-
Moulton, M.J., Song, H. & Whiting, M.F. (2010) Assessing the effects of primer specificity on eliminating numt coamplification in DNAbarcoding: a case study from Orthoptera (Arthropoda: Insecta). Molecular Ecology Resources, 10, 615-627.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 615-627
-
-
Moulton, M.J.1
Song, H.2
Whiting, M.F.3
-
33
-
-
45849154165
-
jModelTest: phylogenetic model averaging.
-
Posada, D. (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
35
-
-
0028251187
-
Evolution, weighting and the phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers.
-
Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H. & Flook, P. (1994) Evolution, weighting and the phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America, 87, 651-701.
-
(1994)
Annals of the Entomological Society of America
, vol.87
, pp. 651-701
-
-
Simon, C.1
Frati, F.2
Beckenbach, A.3
Crespi, B.4
Liu, H.5
Flook, P.6
-
36
-
-
24944435398
-
Mitochondrial microheteroplasmy and a theory of aging and age-related disease.
-
Smigrodzki, R.M. & Khan, S.M. (2005) Mitochondrial microheteroplasmy and a theory of aging and age-related disease. Rejuvenation Research, 8, 172-198.
-
(2005)
Rejuvenation Research
, vol.8
, pp. 172-198
-
-
Smigrodzki, R.M.1
Khan, S.M.2
-
37
-
-
51649110939
-
Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified.
-
Song, H., Buhay, J.E., Whiting, M.F. & Crandall, K.A. (2008) Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified. Proceedings of the National Academy of Sciences of the United States of America, 105, 13486-13491.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, pp. 13486-13491
-
-
Song, H.1
Buhay, J.E.2
Whiting, M.F.3
Crandall, K.A.4
-
38
-
-
0031884718
-
Numts: a challenge for avian systematics and population biology.
-
Sorenson, M.D. & Quinn, T.W. (1998) Numts: a challenge for avian systematics and population biology. The Auk, 115, 214-221.
-
(1998)
The Auk
, vol.115
, pp. 214-221
-
-
Sorenson, M.D.1
Quinn, T.W.2
-
39
-
-
0035163597
-
Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences.
-
Speksnijder, A.G., Kowalchuk, G.A., De Jong, S., Kline, E., Stephen, J.R. & Laanbroek, H.J. (2001) Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences. Applied Environmental Microbiology, 67, 469-472.
-
(2001)
Applied Environmental Microbiology
, vol.67
, pp. 469-472
-
-
Speksnijder, A.G.1
Kowalchuk, G.A.2
De Jong, S.3
Kline, E.4
Stephen, J.R.5
Laanbroek, H.J.6
-
40
-
-
34447288728
-
Double trouble for grasshopper molecular systematics: intra-individual heterogeneity of both mitochondrial 12S-valine-16S and nuclear internal transcribed spacer ribosomal DNA sequences in Hesperotettix viridis (Orthoptera: Acrididae).
-
Sword, G.A., Senior, L.B., Gaskin, J.F. & Joern, A. (2007) Double trouble for grasshopper molecular systematics: intra-individual heterogeneity of both mitochondrial 12S-valine-16S and nuclear internal transcribed spacer ribosomal DNA sequences in Hesperotettix viridis (Orthoptera: Acrididae). Systematic Entomology, 32, 420-428.
-
(2007)
Systematic Entomology
, vol.32
, pp. 420-428
-
-
Sword, G.A.1
Senior, L.B.2
Gaskin, J.F.3
Joern, A.4
-
41
-
-
0024269811
-
Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedure.
-
Tamura, K. & Aotsuka, T. (1988) Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedure. Biochemical Genetics, 26, 815-819.
-
(1988)
Biochemical Genetics
, vol.26
, pp. 815-819
-
-
Tamura, K.1
Aotsuka, T.2
-
42
-
-
34547781750
-
Mega4: Molecular evolutionary genetics analysis (MEGA) software version 4.0.
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007) Mega4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
43
-
-
0026662698
-
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.
-
Templeton, A.R., Crandall, K.A. & Sing, C.F. (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-633.
-
(1992)
Genetics
, vol.132
, pp. 619-633
-
-
Templeton, A.R.1
Crandall, K.A.2
Sing, C.F.3
-
44
-
-
34548486138
-
The occurrence, detection, and avoidance of mitochondrial DNA translocations in mammalian systematics and phylogeography.
-
Triant, D.A. & DeWoody, J.A. (2007) The occurrence, detection, and avoidance of mitochondrial DNA translocations in mammalian systematics and phylogeography. Journal of Mammalogy, 88, 908-920.
-
(2007)
Journal of Mammalogy
, vol.88
, pp. 908-920
-
-
Triant, D.A.1
DeWoody, J.A.2
-
45
-
-
0034856350
-
Germ line insertion of mtDNA at the breakpoint junction of a reciprocal constitutional translocation.
-
Willett-Brozick, J.E., Savul, S.A., Richey, L.E. & Baysal, B.E. (2001) Germ line insertion of mtDNA at the breakpoint junction of a reciprocal constitutional translocation. Human Genetics, 109, 216-223.
-
(2001)
Human Genetics
, vol.109
, pp. 216-223
-
-
Willett-Brozick, J.E.1
Savul, S.A.2
Richey, L.E.3
Baysal, B.E.4
-
46
-
-
56549131066
-
Revealing the hidden complexities of mtDNA inheritance.
-
White, D.J., Wolff, J.N., Pierson, M. & Gemmell, N.J. (2008) Revealing the hidden complexities of mtDNA inheritance. Molecular Ecology, 17, 4925-4942.
-
(2008)
Molecular Ecology
, vol.17
, pp. 4925-4942
-
-
White, D.J.1
Wolff, J.N.2
Pierson, M.3
Gemmell, N.J.4
-
47
-
-
0000387373
-
Nuclear integrations: challenges for mitochondrial DNA markers.
-
Zhang, D.X. & Hewitt, G.M. (1996) Nuclear integrations: challenges for mitochondrial DNA markers. Trends in Ecology and Evolution, 11, 247-251.
-
(1996)
Trends in Ecology and Evolution
, vol.11
, pp. 247-251
-
-
Zhang, D.X.1
Hewitt, G.M.2
-
48
-
-
0026002624
-
Mitochondrial D-loop sequences are integrated in the rat nuclear genome.
-
Zullo, S., Sieu, L.C., Slightom, J.L., Hadler, H.I. & Eisenstadt, J.M. (1991) Mitochondrial D-loop sequences are integrated in the rat nuclear genome. Journal of Molecular Biology, 221, 1223-1235.
-
(1991)
Journal of Molecular Biology
, vol.221
, pp. 1223-1235
-
-
Zullo, S.1
Sieu, L.C.2
Slightom, J.L.3
Hadler, H.I.4
Eisenstadt, J.M.5
|