Force spectroscopy of single multidomain biopolymers: A master equation approach

European Physical Journal E

Volumn 18, Issue 1, 2005, Pages 1-13

  Braun, O ^a   Seifert, U ^a  

^a UNIVERSITY OF STUTTGART   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

APPROXIMATION THEORY; ATOMIC FORCE MICROSCOPY; MATHEMATICAL MODELS; PROTEINS; TWO DIMENSIONAL;

LINEAR RAMP VELOCITY; META-STABLE STATES; MOLECULAR PARAMETERS; TWO-DIMENSIONAL SUBSPACES;

BIOPOLYMERS;

BIOPOLYMER;

ALGORITHM; ARTICLE; ATOMIC FORCE MICROSCOPY; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; ELASTICITY; MECHANICAL STRESS; METHODOLOGY; MICROMANIPULATION; PROTEIN TERTIARY STRUCTURE;

ALGORITHMS; BIOPOLYMERS; COMPUTER SIMULATION; ELASTICITY; MICROMANIPULATION; MICROSCOPY, ATOMIC FORCE; MODELS, CHEMICAL; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; STRESS, MECHANICAL;

EID: 26644469551     PISSN: 12928941     EISSN: 1292895X     Source Type: Journal    
DOI: 10.1140/epje/i2005-10024-8     Document Type: Article

References (37)

1. M. Ludwig, M. Rief, L. Schmidt, H. Li, F. Oesterhelt, M. Gautel, H.E. Gaub, Appl. Phys. A 68, 173 (1999).
2. H. Clausen-Schaumann, M. Seitz, R. Krautbauer, H.E. Gaub, Curr. Opin. Chem. Biol. 4, 524 (2000).
3. O.H. Willemsen, M.M.E. Snel, A. Cambi, J. Greve, B.G.D. Grooth, C.G. Figdor, Biophys. J. 79, 3267 (2000).
4. R. Merkel, Phys. Rep. 346, 344 (2001).
5. M. Rief, H. Grubmüller, ChemPhysChem 3, 255 (2002).
6. D.J. Muller, H. Janovjak, T. Lehto, L. Kuerschner, K. Anderson, Prog. Biophys. Mol. Biol. 79, 1 (2002).
7. M. Rief, M. Gautel, F. Oesterhelt, J.M. Fernandez, H.E. Gaub, Science 276, 1109 (1997).
8. L. Tskhovrebova, J. Trinick, A. Sleep, R.M. Simmons, Nature 387, 308 (1997).
9. M.S.Z. Kellermayer, S.B. Smith, H.L. Granzier, C. Bustamante, Science 276, 1112 (1997).
10. H. Janovjak, J. Struckmeier, M. Hubain, A. Kedrov, M. Kessler, D.J. Muller, Structure 12, 871 (2004).
11. M. Rief, F. Oesterhelt, B. Heymann, H.E. Gaub, Science 275, 1295 (1997).
12. E. Evans, K. Ritchie, Biophys. J. 72, 1541 (1997).
13. M. Rief, J.M. Fernandez, H.E. Gaub, Phys. Rev. Lett. 81, 4764 (1998).
14. D.E. Makarov, P.K. Hansma, H. Metiu, J. Chem. Phys. 114, 9663 (2001).
15. I.L. Jäger, Biophys. J. 81, 1897 (2001).
16. M. Gao, H. Lu, K. Schulten, Biophys. J. 81, 2268 (2001).
17. P.-C. Li, E. Makarov, J. Chem. Phys. 119, 9260 (2003).
18. A.R.D. Marenduzzo, A. Marita, F. Seno, Eur. Phys. J. E 15, 83 (2004).
19. O. Braun, U. Seifert, Europhys. Lett. 68, 746 (2004).
20. O. Braun, A. Hanke, U. Seifert, Phys. Rev. Lett. 93, 158105 (2004).
21. P. Hänggi, P. Talkner, M. Borkovec, Rev. Mod. Phys. 62, 251 (1990).
22. J.F. Marko, E.D. Siggia, Macromolecules 28, 8759 (1995).
23. G.I. Bell, Science 200, 618 (1978).
24. G. Hummer, A. Szabo, Biophys. J. 85, 5 (2003).
25. B. Heymann, H. Grubmüller, Phys. Rev. Lett. 84, 6126 (2000).
26. M. Raible, M. Evstigneev, P. Reimann, F.W. Bartels, R. Ros, J. Biotechnol. 112, 13 (2004).
27. N.G. van Kampen, Can. J. Phys. 39, 551 (1961).
28. H. Qian, J. Phys. Chem. B 106, 2065 (2002).
29. U. Seifert, Phys. Rev. Lett. 84, 2750 (2000);
30. Europhys. Lett. 58, 792 (2002).
31. T. Erdmann, U.S. Schwarz, Phys. Rev. Lett. 92, 108102 (2004);
32. J. Chem. Phys. 121, 8997 (2004).
33. P. Hanggi, H. Grabert, P. Talkner, H. Thomas, Phys. Rev. A 29, 371 (1984).
34. E.A. Coddington, N. Levinson, Theory of Ordinary Differential Equations (McGraw-Hill Book Company, New York, Toronto, London, 1986).
35. J. Casado-Pascual, J. Gómez-Ordóñez, M. Morillo, P. Hänggi, Europhys. Lett. 58, 342 (2002).
36. P.E. Marszalek, H. Lu, H. Li, M. Carrion-Vazquez, A.F. Oberhauser, K. Schulten, J.M. Fernandez, Nature 402, 100 (1999).
37. C.M. Bender, S.A. Orszag, Advanced Mathematical Methods for Scientists and Engineers (Springer Verlag, Berlin, Heidelberg, New York, 2000).