Bacillus zhanjiangensis sp. nov., isolated from an oyster in South China Sea

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 99, Issue 3, 2011, Pages 473-480

  Chen, Yi Guang ^a   Hu, Song Ping ^b   Tang, Shu Kun ^c   He, Jian Wu ^a   Xiao, Jian Qing ^a   Zhu, Hong Yi ^a   Li, Wen Jun ^c,d  

^a JISHOU UNIVERSITY   (China)

^b JIANGXI AGRICULTURAL UNIVERSITY   (China)

^c YUNNAN UNIVERSITY   (China)

^d SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

Author keywords

Bacillus zhanjiangensis sp. nov.; South China Sea

Indexed keywords

CARDIOLIPIN; CATALASE; DIAMINOPIMELIC ACID; FATTY ACID; GENOMIC DNA; MENAQUINONE; OXIDOREDUCTASE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S; SODIUM CHLORIDE;

ARTICLE; BACILLUS; BACILLUS COHNII; BACILLUS HALMAPALUS; BACILLUS HORIKOSHII; BACILLUS ZHANJIANGENSIS; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OYSTER; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE;

BACILLUS; BASE COMPOSITION; CARDIOLIPINS; MOLECULAR SEQUENCE DATA; PHOSPHATIDYLETHANOLAMINES; PHOSPHATIDYLGLYCEROLS; PHYLOGENY;

BACILLUS (BACTERIUM); BACILLUS COHNII; BACILLUS HALMAPALUS; BACILLUS HORIKOSHII; BACTERIA (MICROORGANISMS); OSTREIDAE;

EID: 79952486064     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-010-9510-9     Document Type: Article

References (46)

1. Arahal DR, Ventosa A (2002) Moderately halophilic and halotolerant species of Bacillus and related genera. In: Berkeley RCW, Heyndrickx M, Logan N, De Vos P (eds) Applications and systematics of Bacillus and relatives. Blackwell, Oxford, pp 83-99
2. C Ash JAE Farrow S Wallbanks MD Collins 1991 Phylogenetic heterogeneity of the genus Bacillus as revealed by comparative analysis of small-subunit ribosomal-RNA sequences Lett Appl Microbiol 13 202 206 1:CAS:528: DyaK38XhsVOqsL8%3D 10.1111/j.1472-765X.1991.tb00608.x
3. Atlas RM (1993) In: Parks LC (ed) Handbook of microbiological media. CRC Press, Boca Raton, FL, pp 666-672
4. YG Chen XL Cui R Pukall HM Li YL Yang LH Xu ML Wen Q Peng CL Jiang 2007 Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China Int J Syst Evol Microbiol 57 2327 2332 1:CAS:528:DC%2BD2sXhsVanu7rK 10.1099/ijs.0.64783-0 17911305 (Pubitemid 350031710)
5. YG Chen YQ Zhang JX Shi HD Xiao SK Tang ZX Liu K Huang XL Cui WJ Li 2009 Jeotgalicoccus marinus sp. nov., a marine bacterium isolated from a sea urchin Int J Syst Evol Microbiol 59 1625 1629 1:CAS:528:DC%2BD1MXpvVyqsr4%3D 10.1099/ijs.0.002451-0 19542134
6. YG Chen YQ Zhang HD Xiao ZX Liu LB Yi JX Shi XY Zhi XL Cui WJ Li 2009 Pontibacillus halophilus sp. nov., a moderately halophilic bacterium isolated from sea urchin Int J Syst Evol Microbiol 59 1635 1639 1:CAS:528: DC%2BD1MXpvVyqsrw%3D 10.1099/ijs.0.002469-0 19542115
7. YG Chen YQ Zhang YX Wang ZX Liu HP Klenk HD Xiao SK Tang XL Cui WJ Li 2009 Bacillus neizhouensis sp. nov., a halophilic marine bacterium isolated from a sea anemone Int J Syst Evol Microbiol 59 3035 3039 1:CAS:528: DC%2BC3cXhtFOluro%3D 10.1099/ijs.0.009522-0 19643899
8. YG Chen YQ Zhang LB Yi ZY Li YX Wang HD Xiao QH Chen XL Cui WJ Li 2010 Pontibacillus litoralis sp. nov., a facultatively anaerobic bacterium isolated from a sea anemone, and emended description of the genus Pontibacillus Int J Syst Evol Microbiol 60 560 565 1:CAS:528:DC%2BC3cXltValsL0%3D 10.1099/ijs.0.009910-0 19654352
9. J Chun JH Lee Y Jung M Kim S Kim BK Kim YW Lim 2007 EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences Int J Syst Evol Microbiol 57 2259 2261 1:CAS:528:DC%2BD2sXhsVanu73P 10.1099/ijs.0.64915-0 17911292 (Pubitemid 350031697)
10. MD Collins D Jones 1980 Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid J Appl Bacteriol 48 459 470 1:CAS:528:DyaL3cXltFShtbY%3D (Pubitemid 10014746)
11. Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London
12. XL Cui PH Mao M Zeng WJ Li LP Zhang LH Xu CL Jiang 2001 Streptomonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae Int J Syst Evol Microbiol 51 357 363 1:CAS:528:DC%2BD3MXivVOrtLk%3D 11321080 (Pubitemid 32266678)
13. J De Ley H Cattoir A Reynaerts 1970 The quantitative measurement of DNA hybridization from renaturation rates Eur J Biochem 12 133 142 10.1111/j.1432-1033.1970.tb00830.x 4984993
14. J Felsenstein 1981 Evolutionary trees from DNA sequences: a maximum likelihood approach J Mol Evol 17 368 376 1:CAS:528:DyaL3MXls1Cisr8%3D 10.1007/BF01734359 7288891 (Pubitemid 11016207)
15. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791 10.2307/2408678
16. Felsenstein J (2002) PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
17. T Gregersen 1978 Rapid method for distinction of Gram-negative from Gram-positive bacteria Eur J Appl Microbiol Biotechnol 5 123 127 10.1007/BF00498806 (Pubitemid 8370239)
18. I Groth P Schumann N Weiss K Martin FA Rainey 1996 Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall Int J Syst Bacteriol 46 234 239 1:STN:280:DyaK287jvV2rsQ%3D%3D 10.1099/00207713-46-1-234 8573501 (Pubitemid 26030497)
19. T Hasegawa M Takizawa S Tanida 1983 A rapid analysis for chemical grouping of aerobic actinomycetes J Gen Appl Microbiol 29 319 322 1:CAS:528:DyaL3sXmtV2isrw%3D 10.2323/jgam.29.319 (Pubitemid 14176930)
20. Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM (1985) Preparation of chromosomal, plasmid and phage DNA. In: Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (eds) Genetic manipulation of Streptomyces: a laboratory manual. F. Crowe and Sons, Norwich, pp 79-80
21. K Horikoshi 1999 Alkaliphiles: some applications of their products for biotechnology Microbiol Mol Biol Rev 63 735 750 1:CAS:528:DC%2BD3cXjtVSitQ%3D%3D 10585964
22. K Huang L Zhang ZX Liu QH Chen QZ Peng WJ Li XL Cui YG Chen 2009 Diversity of culturable bacteria associated with the sea urchin Hemicentrotus pulcherrimus from Naozhou Island Acta Microbiol Sin 49 1424 1429 1:CAS:528:DC%2BC3cXjtFSru74%3D
23. VAR Hu H Festl KH Schleifer 1983 Studies on the spectrophotometric determination of DNA hybridization from renaturation rates Syst Appl Microbiol 4 184 192 (Pubitemid 13066307)
24. KD Jahnke 1992 BASIC computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer J Microbiol Methods 15 61 73 10.1016/0167-7012(92)90069-G
25. P Kämpfer 1994 Limits and possibilities of total fatty acid analysis for classification and identification of Bacillus species Syst Appl Microbiol 17 86 98 (Pubitemid 24193425)
26. M Kimura 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J Mol Evol 16 111 120 1:CAS:528:DyaL3MXmtFSktg%3D%3D 10.1007/BF01731581 7463489 (Pubitemid 11166431)
27. AG Kluge FS Farris 1969 Quantitative phyletics and the evolution of anurans Syst Zool 18 1 32 10.2307/2412407
28. Krulwich TA, Hicks DB, Swartz TH, Ito M (2007) Bioenergetic adaptations that support alkaliphily. In: Gerday C, Glansdorff N (eds) Physiology and biochemistry of extremophiles. American Society for Microbiology, Washington, pp 311-329
29. S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163 1:CAS:528:DC%2BD2cXntFGqu7s%3D 10.1093/bib/5.2.150 15260895
30. R Margesin F Schinner 2001 Potential of halotolerant and halophilic microorganisms for biotechnology Extremophiles 5 73 83 1:CAS:528: DC%2BD3MXktVSnsbY%3D 10.1007/s007920100184 11354458 (Pubitemid 33725466)
31. M Mesbah U Premachandran WB Whitman 1989 Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography Int J Syst Bacteriol 39 159 167 1:CAS:528:DyaL1MXltFWku7o%3D 10.1099/00207713-39-2- 159
32. DE Minnikin MD Collins M Goodfellow 1979 Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa J Appl Bacteriol 47 87 95 1:CAS:528:DyaE1MXlsFCiu7w%3D (Pubitemid 9239553)
33. P Nielsen FA Rainey H Outtrup FG Priest D Fritze 1994 Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus FEMS Microbiol Lett 117 61 66 1:CAS:528:DyaK2cXltVeluro%3D 10.1016/0378-1097(94)90171-6
34. P Nielsen D Fritze FG Priest 1995 Phenetic diversity of alkaliphilic Bacillus strains: proposal for nine new species Microbiology 141 1745 1761 1:CAS:528:DyaK2MXntFGnsrc%3D 10.1099/13500872-141-7-1745
35. Y Nogi H Takami K Horikoshi 2005 Characterization of alkaliphilic Bacillus strains used in industry: proposal of five novel species Int J Syst Evol Microbiol 55 2307 2315 10.1099/ijs.0.63649-0 (Pubitemid 41646407)
36. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425 1:STN:280: DyaL1c7ovFSjsA%3D%3D 3447015
37. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc., Newark, DE
38. Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607-654
39. R Spanka D Fritze 1993 Bacillus cohnii sp. nov., a new, obligately alkaliphilic, oval-spore-forming Bacillus species with ornithine and aspartic acid instead of diaminopimelic acid in the cell wall Int J Syst Bacteriol 43 150 156 1:STN:280:DyaK3szht1OntQ%3D%3D 10.1099/00207713-43-1-150 8323866 (Pubitemid 23023164)
40. E Stackebrandt BM Goebel 1994 Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology Int J Syst Bacteriol 44 846 849 1:CAS:528:DyaK2MXitFCnsb4%3D 10.1099/00207713-44-4-846 (Pubitemid 24315169)
41. Stackebrandt E, Liesack W (1993) Nucleic acids and classification. In: Goodfellow M, O'Donnell AG (eds) Handbook of new bacterial systematics. Academic Press, London, pp 152-189
42. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 1:CAS:528:DyaK1cXntFyntQ%3D%3D 10.1093/nar/25.24.4876 9396791 (Pubitemid 28022245)
43. A Ventosa E Quesada F Rodriguez-Valera F Ruiz-Berraquero A Ramos-Cormenzana 1982 Numerical taxonomy of moderately halophilic Gram-negative rods J Gen Microbiol 128 1959 1968 (Pubitemid 13231352)
44. A Ventosa JJ Nieto A Oren 1998 Biology of moderately halophilic aerobic bacteria Microbiol Mol Biol Rev 62 504 544 1:CAS:528:DyaK1cXkt1Oitb0%3D 9618450 (Pubitemid 28270283)
45. LG Wayne DJ Brenner RR Colwell PAD Grimont O Kandler MI Krichevsky LH Moore WEC Moore RGE Murray, et al. 1987 International committee on systematic bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics Int J Syst Bacteriol 37 463 464 10.1099/00207713-37-4-463
46. HD Xiao YG Chen ZX Liu K Huang WJ Li XL Cui L Zhang LB Yi 2009 Phylogenetic diversity of cultivable bacteria associated with a sea anemone from coast of the Naozhou Island in Zhanjiang, China Acta Microbiol Sin 49 246 250 1:CAS:528:DC%2BD1MXkvFKntL4%3D