메뉴 건너뛰기




Volumn , Issue , 2010, Pages 533-538

A new method for measuring the semantic similarity on gene ontology

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PROCESS; CELLULAR COMPONENTS; FUNCTIONAL RELATIONSHIP; GENE EXPRESSION DATASETS; GENE ONTOLOGY; MOLECULAR FUNCTION; NON-LINEAR CORRELATIONS; NOVEL METHODS; SEMANTIC SIMILARITY; SHORTEST PATH; SHORTEST PATH ALGORITHMS; STATE-OF-THE-ART METHODS; STRUCTURE INFORMATION;

EID: 79952422448     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2010.5706623     Document Type: Conference Paper
Times cited : (16)

References (22)
  • 2
    • 67649840899 scopus 로고    scopus 로고
    • Seeing the forest for the trees: Using the Gene Ontology to restructure hierarchical clustering
    • D. Dotan-Cohen, S. Kasif, and A. Melkman, "Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering", Bioinformatics, 25, pp. 1789-1795, 2009.
    • (2009) Bioinformatics , vol.25 , pp. 1789-1795
    • Dotan-Cohen, D.1    Kasif, S.2    Melkman, A.3
  • 3
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • M. Eisen, P. Spellman, P. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns", PNAS, 95, pp. 14863-14868, 1998.
    • (1998) PNAS , vol.95 , pp. 14863-14868
    • Eisen, M.1    Spellman, P.2    Brown, P.3    Botstein, D.4
  • 4
    • 34250764323 scopus 로고    scopus 로고
    • GOSim - An R-Package for Computation of Information Theoretic GO Similarities between Terms and Gene Products
    • H. Froehlich, N. Speer, A. Poustka, T. Beissbarth, "GOSim - An R-Package for Computation of Information Theoretic GO Similarities Between Terms and Gene Products", BMC Bioinformatics, 8, pp. 166, 2007.
    • (2007) BMC Bioinformatics , vol.8 , pp. 166
    • Froehlich, H.1    Speer, N.2    Poustka, A.3    Beissbarth, T.4
  • 7
    • 0005180705 scopus 로고    scopus 로고
    • An information-theoretic definition of similarity
    • D. Lin, "An information-theoretic definition of similarity", ICML, pp. 296-304, 1998.
    • (1998) ICML , pp. 296-304
    • Lin, D.1
  • 8
    • 0037480738 scopus 로고    scopus 로고
    • Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
    • P. W. Lord, R. D. Stevens, A. Brass, and C. Goble, "Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation", Bioinformatics, 19, pp. 1275-1283, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 1275-1283
    • Lord, P.W.1    Stevens, R.D.2    Brass, A.3    Goble, C.4
  • 9
    • 67650898284 scopus 로고    scopus 로고
    • Incorporating functional inter-relationships into protein function prediction algorithms
    • G. Pandey, C. Myers, and V. Kumar, "Incorporating functional inter-relationships into protein function prediction algorithms", BMC Bioinformatics, 10, pp. 1471-2105, 2009.
    • (2009) BMC Bioinformatics , vol.10 , pp. 1471-2105
    • Pandey, G.1    Myers, C.2    Kumar, V.3
  • 10
    • 20444377910 scopus 로고    scopus 로고
    • Taxonomy learning: Factoring the structure of a taxonomy into a semantic classification decision
    • V. Pekar and S. Staab, "Taxonomy learning: factoring the structure of a taxonomy into a semantic classification decision", Proc. Int. Conf. on Computational Linguistics, 2002.
    • Proc. Int. Conf. on Computational Linguistics, 2002
    • Pekar, V.1    Staab, S.2
  • 11
    • 0002016474 scopus 로고    scopus 로고
    • Semantic similarity in taxonomy: An information-based measure and its application to problems of ambiguity in natural language
    • P. Resnik, "Semantic similarity in taxonomy: An information-based measure and its application to problems of ambiguity in natural language", Journal of Artificial Intelligence Research, 11, pp. 95-130, 1999.
    • (1999) Journal of Artificial Intelligence Research , vol.11 , pp. 95-130
    • Resnik, P.1
  • 12
    • 33748335463 scopus 로고    scopus 로고
    • A new measure for functional similarity of gene products based on gene ontology
    • A. Schlicker, F. Domingues, J. Rahnenführer, and T. Lengauer, "A new measure for functional similarity of gene products based on gene ontology", BMC Bioinformatics, 7, pp. 302, 2006.
    • (2006) BMC Bioinformatics , vol.7 , pp. 302
    • Schlicker, A.1    Domingues, F.2    Rahnenführer, J.3    Lengauer, T.4
  • 13
    • 84903711515 scopus 로고    scopus 로고
    • SGD project, http://www.yeastgenome.org/.
    • SGD Project
  • 14
    • 33750369245 scopus 로고    scopus 로고
    • A statistical evaluation of recent full reference image quality assessment algorithms
    • H. Sheikh, M. Sabir, and A. Bovik, "A statistical evaluation of recent full reference image quality assessment algorithms", IEEE Trans. IP, 15, pp. 3440-3451, 2006.
    • (2006) IEEE Trans. IP , vol.15 , pp. 3440-3451
    • Sheikh, H.1    Sabir, M.2    Bovik, A.3
  • 16
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium, "Gene ontology: tool for the unification of biology", Nature Genetics, 25, pp. 25-29, 2000.
    • (2000) Nature Genetics , vol.25 , pp. 25-29
  • 17
    • 79952388991 scopus 로고    scopus 로고
    • An ontology-driven clustering method for supporting gene expression analysis, Computer-based Medical Systems
    • H. Wang, F. Azuaje, and O. Bodenreider, "An ontology-driven clustering method for supporting gene expression analysis, Computer-based Medical Systems", Proc. IEEE Symposium on Computer-based Medical Systems, pp. 23-24, 2005.
    • (2005) Proc. IEEE Symposium on Computer-based Medical Systems , pp. 23-24
    • Wang, H.1    Azuaje, F.2    Bodenreider, O.3
  • 18
    • 34447294237 scopus 로고    scopus 로고
    • A new method to measure the semantic similarity of GO terms
    • J. Wang, Z. Du, R. Payattakool, P. S. Yu, and C. Chen, "A new method to measure the semantic similarity of GO terms", Bioinformatics, 23, pp. 1274-1281, 2007.
    • (2007) Bioinformatics , vol.23 , pp. 1274-1281
    • Wang, J.1    Du, Z.2    Payattakool, R.3    Yu, P.S.4    Chen, C.5
  • 19
    • 19144367138 scopus 로고    scopus 로고
    • Prediction of functional modules based on Comparative genome analysis and Gene Ontology application
    • H. Wu, Z. Su, F. Mao, V. Olman, and Y. Xu, "Prediction of functional modules based on Comparative genome analysis and Gene Ontology application", Nucleic Acid Research, 33, pp. 2822-2837, 2005.
    • (2005) Nucleic Acid Research , vol.33 , pp. 2822-2837
    • Wu, H.1    Su, Z.2    Mao, F.3    Olman, V.4    Xu, Y.5
  • 20
    • 58149312546 scopus 로고    scopus 로고
    • Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data
    • T. Xu, L. Du, and Y. Zhou, "Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data", BMC Bioinformatics, 9, pp. 472, 2008.
    • (2008) BMC Bioinformatics , vol.9 , pp. 472
    • Xu, T.1    Du, L.2    Zhou, Y.3
  • 21
    • 77951942707 scopus 로고    scopus 로고
    • GOSemSim: An R package for measuring semantic similarity among GO terms and gene products
    • G. Yu, F. Li, Y. Qin, X. Bo, Y. Wu, and S. Wang, "GOSemSim: an R package for measuring semantic similarity among GO terms and gene products", Bioinformatics, 26, pp. 976-978, 2010.
    • (2010) Bioinformatics , vol.26 , pp. 976-978
    • Yu, G.1    Li, F.2    Qin, Y.3    Bo, X.4    Wu, Y.5    Wang, S.6
  • 22
    • 78651062305 scopus 로고    scopus 로고
    • RFSIM: A feature based image quality assessment metric using Riesz transforms
    • L. Zhang, L. Zhang, and X. Mou, "RFSIM: a feature based image quality assessment metric using Riesz transforms", ICIP, 2010.
    • (2010) ICIP
    • Zhang, L.1    Zhang, L.2    Mou, X.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.