-
1
-
-
3142749026
-
A knowledge-based clustering algorithm driven by gene ontology
-
J. Cheng, M. Cline, J. Martin, D. Finkelstein, T. Awad, D. Kulp, and M. A. Siani-Rose, "A knowledge-based clustering algorithm driven by gene ontology", Journal of Biopharmaceutical Statistics, 14, pp. 687-700, 2004.
-
(2004)
Journal of Biopharmaceutical Statistics
, vol.14
, pp. 687-700
-
-
Cheng, J.1
Cline, M.2
Martin, J.3
Finkelstein, D.4
Awad, T.5
Kulp, D.6
Siani-Rose, M.A.7
-
2
-
-
67649840899
-
Seeing the forest for the trees: Using the Gene Ontology to restructure hierarchical clustering
-
D. Dotan-Cohen, S. Kasif, and A. Melkman, "Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering", Bioinformatics, 25, pp. 1789-1795, 2009.
-
(2009)
Bioinformatics
, vol.25
, pp. 1789-1795
-
-
Dotan-Cohen, D.1
Kasif, S.2
Melkman, A.3
-
3
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
M. Eisen, P. Spellman, P. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns", PNAS, 95, pp. 14863-14868, 1998.
-
(1998)
PNAS
, vol.95
, pp. 14863-14868
-
-
Eisen, M.1
Spellman, P.2
Brown, P.3
Botstein, D.4
-
4
-
-
34250764323
-
GOSim - An R-Package for Computation of Information Theoretic GO Similarities between Terms and Gene Products
-
H. Froehlich, N. Speer, A. Poustka, T. Beissbarth, "GOSim - An R-Package for Computation of Information Theoretic GO Similarities Between Terms and Gene Products", BMC Bioinformatics, 8, pp. 166, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 166
-
-
Froehlich, H.1
Speer, N.2
Poustka, A.3
Beissbarth, T.4
-
5
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
R. Gentleman, V. Carey, D. Bates, B. Bolstad, M. Dettling, S. Dudoit, B. Ellis, L. Gautier, Y. Ge and J. Gentry, K. Hornik, T. Hothorn, W. Huber, S. Iacus, R. Irizarry and F. Leisch, C. Li, M. Maechler, A. Rossini, G. Sawitzki, C. Smith, G. Smyth, L. Tierney, J. Yang, and J. Zhang, "Bioconductor: Open software development for computational biology and bioinformatics", Genome Biology, 5, pp. R80, 2004.
-
(2004)
Genome Biology
, vol.5
-
-
Gentleman, R.1
Carey, V.2
Bates, D.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.24
Zhang, J.25
more..
-
7
-
-
0005180705
-
An information-theoretic definition of similarity
-
D. Lin, "An information-theoretic definition of similarity", ICML, pp. 296-304, 1998.
-
(1998)
ICML
, pp. 296-304
-
-
Lin, D.1
-
8
-
-
0037480738
-
Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation
-
P. W. Lord, R. D. Stevens, A. Brass, and C. Goble, "Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation", Bioinformatics, 19, pp. 1275-1283, 2003.
-
(2003)
Bioinformatics
, vol.19
, pp. 1275-1283
-
-
Lord, P.W.1
Stevens, R.D.2
Brass, A.3
Goble, C.4
-
9
-
-
67650898284
-
Incorporating functional inter-relationships into protein function prediction algorithms
-
G. Pandey, C. Myers, and V. Kumar, "Incorporating functional inter-relationships into protein function prediction algorithms", BMC Bioinformatics, 10, pp. 1471-2105, 2009.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 1471-2105
-
-
Pandey, G.1
Myers, C.2
Kumar, V.3
-
10
-
-
20444377910
-
Taxonomy learning: Factoring the structure of a taxonomy into a semantic classification decision
-
V. Pekar and S. Staab, "Taxonomy learning: factoring the structure of a taxonomy into a semantic classification decision", Proc. Int. Conf. on Computational Linguistics, 2002.
-
Proc. Int. Conf. on Computational Linguistics, 2002
-
-
Pekar, V.1
Staab, S.2
-
11
-
-
0002016474
-
Semantic similarity in taxonomy: An information-based measure and its application to problems of ambiguity in natural language
-
P. Resnik, "Semantic similarity in taxonomy: An information-based measure and its application to problems of ambiguity in natural language", Journal of Artificial Intelligence Research, 11, pp. 95-130, 1999.
-
(1999)
Journal of Artificial Intelligence Research
, vol.11
, pp. 95-130
-
-
Resnik, P.1
-
12
-
-
33748335463
-
A new measure for functional similarity of gene products based on gene ontology
-
A. Schlicker, F. Domingues, J. Rahnenführer, and T. Lengauer, "A new measure for functional similarity of gene products based on gene ontology", BMC Bioinformatics, 7, pp. 302, 2006.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 302
-
-
Schlicker, A.1
Domingues, F.2
Rahnenführer, J.3
Lengauer, T.4
-
13
-
-
84903711515
-
-
SGD project, http://www.yeastgenome.org/.
-
SGD Project
-
-
-
14
-
-
33750369245
-
A statistical evaluation of recent full reference image quality assessment algorithms
-
H. Sheikh, M. Sabir, and A. Bovik, "A statistical evaluation of recent full reference image quality assessment algorithms", IEEE Trans. IP, 15, pp. 3440-3451, 2006.
-
(2006)
IEEE Trans. IP
, vol.15
, pp. 3440-3451
-
-
Sheikh, H.1
Sabir, M.2
Bovik, A.3
-
15
-
-
0031742022
-
Comprehensive Identification of Cell Cycle-regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization
-
P. Spellman, G. Sherlock, M. Zhang, V. Iyer, K. Anders, M. Eisen, P. Brown, D. Botstein, and B. Futcher, "Comprehensive Identification of Cell Cycle-regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization", Molecular Biology of the Cell, 9, pp. 3273-3297, 1998.
-
(1998)
Molecular Biology of the Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.1
Sherlock, G.2
Zhang, M.3
Iyer, V.4
Anders, K.5
Eisen, M.6
Brown, P.7
Botstein, D.8
Futcher, B.9
-
16
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium, "Gene ontology: tool for the unification of biology", Nature Genetics, 25, pp. 25-29, 2000.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
-
17
-
-
79952388991
-
An ontology-driven clustering method for supporting gene expression analysis, Computer-based Medical Systems
-
H. Wang, F. Azuaje, and O. Bodenreider, "An ontology-driven clustering method for supporting gene expression analysis, Computer-based Medical Systems", Proc. IEEE Symposium on Computer-based Medical Systems, pp. 23-24, 2005.
-
(2005)
Proc. IEEE Symposium on Computer-based Medical Systems
, pp. 23-24
-
-
Wang, H.1
Azuaje, F.2
Bodenreider, O.3
-
18
-
-
34447294237
-
A new method to measure the semantic similarity of GO terms
-
J. Wang, Z. Du, R. Payattakool, P. S. Yu, and C. Chen, "A new method to measure the semantic similarity of GO terms", Bioinformatics, 23, pp. 1274-1281, 2007.
-
(2007)
Bioinformatics
, vol.23
, pp. 1274-1281
-
-
Wang, J.1
Du, Z.2
Payattakool, R.3
Yu, P.S.4
Chen, C.5
-
19
-
-
19144367138
-
Prediction of functional modules based on Comparative genome analysis and Gene Ontology application
-
H. Wu, Z. Su, F. Mao, V. Olman, and Y. Xu, "Prediction of functional modules based on Comparative genome analysis and Gene Ontology application", Nucleic Acid Research, 33, pp. 2822-2837, 2005.
-
(2005)
Nucleic Acid Research
, vol.33
, pp. 2822-2837
-
-
Wu, H.1
Su, Z.2
Mao, F.3
Olman, V.4
Xu, Y.5
-
20
-
-
58149312546
-
Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data
-
T. Xu, L. Du, and Y. Zhou, "Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data", BMC Bioinformatics, 9, pp. 472, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 472
-
-
Xu, T.1
Du, L.2
Zhou, Y.3
-
21
-
-
77951942707
-
GOSemSim: An R package for measuring semantic similarity among GO terms and gene products
-
G. Yu, F. Li, Y. Qin, X. Bo, Y. Wu, and S. Wang, "GOSemSim: an R package for measuring semantic similarity among GO terms and gene products", Bioinformatics, 26, pp. 976-978, 2010.
-
(2010)
Bioinformatics
, vol.26
, pp. 976-978
-
-
Yu, G.1
Li, F.2
Qin, Y.3
Bo, X.4
Wu, Y.5
Wang, S.6
-
22
-
-
78651062305
-
RFSIM: A feature based image quality assessment metric using Riesz transforms
-
L. Zhang, L. Zhang, and X. Mou, "RFSIM: a feature based image quality assessment metric using Riesz transforms", ICIP, 2010.
-
(2010)
ICIP
-
-
Zhang, L.1
Zhang, L.2
Mou, X.3
|