Fluorescence-tagged transgenic lines reveal genetic defects in pollen growth-application to the eIF3 complex

PLoS ONE

Volumn 6, Issue 3, 2011, Pages

  Roy, Bijoyita ^a,d   Copenhaver, Gregory P ^b,c   von Arnim, Albrecht G ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

^b UNIVERSITY OF NORTH CAROLINA   (United States)

^c UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INITIATION FACTOR 3; INITIATION FACTOR 3H; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; MULTIPROTEIN COMPLEX; PHOTOPROTEIN;

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; FLUORESCENCE; GAMETOPHYTE; GENE MUTATION; LAT52 GENE; MARKER GENE; NONHUMAN; PLANT GENE; POLLEN DEVELOPMENT; POLLEN GERMINATION; POLLEN TUBE GROWTH; RNA TRANSLATION; TRANSGENE; GENETICS; GERMINATION; GROWTH, DEVELOPMENT AND AGING; HETEROZYGOTE; METABOLISM; MUTATION; POLLEN; POLLEN TUBE; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; EUKARYOTIC INITIATION FACTOR-3; FLUORESCENCE; GERMINATION; HETEROZYGOTE; LUMINESCENT PROTEINS; MULTIPROTEIN COMPLEXES; MUTATION; PLANTS, GENETICALLY MODIFIED; POLLEN; POLLEN TUBE;

EID: 79952322976     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0017640     Document Type: Article

References (36)

1. Becker JD, Boavida LC, Carneiro J, Haury M, Feijo JA, (2003) Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. Plant Physiol 133: 713-725.
2. Honys D, Twell D, (2004) Transcriptome analysis of haploid male gametophyte development in Arabidopsis. Genome Biol 5: R85.
3. Holmes-Davis R, Tanaka CK, Vensel WH, Hurkman WJ, McCormick S, (2005) Proteome mapping of mature pollen of Arabidopsis thaliana. Proteomics 5: 4864-4884.
4. Noir S, Brautigam A, Colby T, Schmidt J, Panstruga R, (2005) A reference map of the Arabidopsis thaliana mature pollen proteome. Biochem Biophys Res Commun 337: 1257-1266.
5. Grobei MA, Qeli E, Brunner E, Rehrauer H, Zhang R, et al. (2009) Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Res 19: 1786-1800.
6. Honys D, Twell D, (2003) Comparative analysis of the Arabidopsis pollen transcriptome. Plant Physiol 132: 640-652.
7. Honys D, Renak D, Fecikova J, Jedelsky PL, Nebesarova J, et al. (2009) Cytoskeleton-associated large RNP complexes in tobacco male gametophyte (EPPs) are associated with ribosomes and are involved in protein synthesis, processing, and localization. J Proteome Res 8: 2015-2031.
8. Brander KA, Kuhlemeier C, (1995) A pollen-specific DEAD-box protein related to translation initiation factor eIF-4A from tobacco. Plant Mol Biol 27: 637-649.
9. Belostotsky DA, Meagher RB, (1996) A pollen-, ovule-, and early embryo-specific poly(A) binding protein from Arabidopsis complements essential functions in yeast. Plant Cell 8: 1261-1275.
10. op den Camp RG, Kuhlemeier C, (1998) Phosphorylation of tobacco eukaryotic translation initiation factor 4A upon pollen tube germination. Nucleic Acids Res 26: 2058-2062.
11. Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, et al. (2007) An Electronic Fluorescent Pictograph browser for exploring and analyzing large-scale biological data sets. PLoS One 2: e718.
12. Boavida LC, Shuai B, Yu HJ, Pagnussat GC, Sundaresan V, et al. (2009) A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Genetics 181: 1369-1385.
13. Borg M, Brownfield L, Twell D, (2009) Male gametophyte development: a molecular perspective. J Exp Bot 60: 1465-1478.
14. Hasegawa Y, Suyama Y, Seiwa K, (2009) Pollen donor composition during the early phases of reproduction revealed by DNA genotyping of pollen grains and seeds of Castanea crenata. New Phytol 182: 994-1002.
15. Sundaresan V, Springer P, Volpe T, Haward S, Jones JD, et al. (1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements. Genes Dev 9: 1797-1810.
16. Johnson MA, von Besser K, Zhou Q, Smith E, Aux G, et al. (2004) Arabidopsis hapless mutations define essential gametophytic functions. Genetics 168: 971-982.
17. Xia C, Wang YJ, Li WQ, Chen YR, Deng Y, et al. (2010) The Arabidopsis eukaryotic translation initiation factor 3, subunit F (AteIF3f), is required for pollen germination and embryogenesis. Plant J 63: 189-202.
18. Francis KE, Lam SY, Harrison BD, Bey AL, Berchowitz LE, et al. (2007) Pollen tetrad-based visual assay for meiotic recombination in Arabidopsis. Proc Natl Acad Sci U S A 104: 3913-3918.
19. Berchowitz LE, Copenhaver GP, (2008) Fluorescent Arabidopsis tetrads: a visual assay for quickly developing large crossover and crossover interference data sets. Nat Protoc 3: 41-50.
20. Berchowitz LE, Copenhaver GP, (2009) Visual markers for detecting gene conversion directly in the gametes of Arabidopsis thaliana. Methods Mol Biol 557: 99-114.
21. Twell D, Wing R, Yamaguchi J, McCormick S, (1989) Isolation and expression of an anther-specific gene from tomato. Mol Gen Genet 217: 240-245.
22. Preuss D, Rhee SY, Davis RW, (1994) Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes. Science 264: 1458-1460.
23. Burks EA, Bezerra PP, Le H, Gallie DR, Browning KS, (2001) Plant initiation factor 3 subunit composition resembles mammalian initiation factor 3 and has a novel subunit. J Biol Chem 276: 2122-2131.
24. Hinnebusch AG, (2006) eIF3: a versatile scaffold for translation initiation complexes. Trends Biochem Sci 31: 553-562.
25. Mitchell SF, Walker SE, Algire MA, Park EH, Hinnebusch AG, et al. (2010) The 5′-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway. Mol Cell 39: 950-962.
26. Kim TH, Kim BH, Yahalom A, Chamovitz DA, von Arnim AG, (2004) Translational regulation via 5′ mRNA leader sequences revealed by mutational analysis of the Arabidopsis translation initiation factor subunit eIF3h. Plant Cell 16: 3341-3356.
27. Kim BH, Cai X, Vaughn JN, von Arnim AG, (2007) On the functions of the h subunit of eukaryotic initiation factor 3 in late stages of translation initiation. Genome Biol 8: R60.
28. Roy B, Vaughn JN, Kim BH, Zhou F, Gilchrist MA, et al. (2010) The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames. RNA 16: 748-761.
29. Zhou F, Roy B, von Arnim AG, (2010) Translation reinitiation and development are compromised in similar ways by mutations in translation initiation factor eIF3h and the ribosomal protein RPL24. BMC Plant Biol 10: 193.
30. Masutani M, Sonenberg N, Yokoyama S, Imataka H, (2007) Reconstitution reveals the functional core of mammalian eIF3. EMBO J 26: 3373-3383.
31. Yahalom A, Kim TH, Roy B, Singer R, von Arnim AG, et al. (2008) Arabidopsis eIF3e is regulated by the COP9 signalosome and has an impact on development and protein translation. Plant J 53: 300-311.
32. Francis KE, Lam SY, Copenhaver GP, (2006) Separation of Arabidopsis pollen tetrads is regulated by QUARTET1, a pectin methylesterase gene. Plant Physiol 142: 1004-1013.
33. Lalanne E, Twell D, (2002) Genetic control of male germ unit organization in Arabidopsis. Plant Physiol 129: 865-875.
34. McCormick S, (2004) Control of male gametophyte development. Plant Cell 16 (Suppl): S142-153.
35. Johnson-Brousseau SA, McCormick S, (2004) A compendium of methods useful for characterizing Arabidopsis pollen mutants and gametophytically-expressed genes. Plant J 39: 761-775.
36. Alexander MP, (1969) Differential staining of aborted and nonaborted pollen. Stain Technol 44: 117-122.