Role for cohesin in the formation of a heterochromatic domain at fission yeast subtelomeres

Molecular and Cellular Biology

Volumn 31, Issue 5, 2011, Pages 1088-1097

  Dheur, Sonia ^a   Saupe, Sven J ^a   Genier, Sylvie ^a   Vazquez, Stéphanie ^a   Javerzat, Jean Paul ^a  

^a Institut de Biochimie et Genetique Cellulaires   (France)

Author keywords

[No Author keywords available]

Indexed keywords

COHESIN; HISTONE;

ARTICLE; CHROMOSOME 1; CONTROLLED STUDY; DOWN REGULATION; GENE EXPRESSION; HETEROCHROMATIN; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; TELOMERE; UPREGULATION; YEAST;

CELL CYCLE PROTEINS; CENTROMERE; CHROMOSOMAL PROTEINS, NON-HISTONE; DOWN-REGULATION; EUCHROMATIN; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; GENE SILENCING; HETEROCHROMATIN; LYSINE; METHYLATION; MUTATION; NUCLEAR PROTEINS; PHOSPHOPROTEINS; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; TELOMERE; UP-REGULATION;

SCHIZOSACCHAROMYCETACEAE;

EID: 79952264328     PISSN: 02707306     EISSN: 10985549     Source Type: Journal    
DOI: 10.1128/MCB.01290-10     Document Type: Article

References (56)

1. Allshire, R. C., E. R. Nimmo, K. Ekwall, J.-P. Javerzat, and G. Granston. 1995. Mutations derepressing silent centromeric domains in fission yeast disrupt chromosome segregation. Genes Dev. 9:218-233.
2. Ayté, J., et al. 1995. The Schizosaccharomyces pombe MBF complex requires heterodimerization for entry into S phase. Mol. Cell. Biol. 15:2589-2599.
3. Bannister, A. J., et al. 2001. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410:120-124. (Pubitemid 32225848)
4. Bernard, P., et al. 2006. A screen for cohesion mutants uncovers Ssl3, the fission yeast counterpart of the cohesin loading factor Scc4. Curr. Biol. 16:875-881.
5. Bernard, P., et al. 2001. Requirement of heterochromatin for cohesion at centromeres. Science 294:2539-2542. (Pubitemid 34027292)
6. Bernard, P., et al. 2008. Cell-cycle regulation of cohesin stability along fission yeast chromosomes. EMBO J. 27:111-121.
7. Birkenbihl, R. P., and S. Subramani. 1992. Cloning and characterization of rad21, an essential gene of Schizosaccharomyces pombe involved in DNA double-strand-break repair. Nucleic Acids Res. 20:6605-6611.
8. Birkenbihl, R. P., and S. Subramani. 1995. The rad21 gene product of Schizosaccharomyces pombe is a nuclear, cell cycle-regulated phosphoprotein. J. Biol. Chem. 270:7703-7711.
9. Boscheron, C., et al. 1996. Cooperation at a distance between silencers and proto-silencers at the yeast HML locus. EMBO J. 15:2184-2195. (Pubitemid 26141135)
10. Bose, T., and J. L. Gerton. 2010. Cohesinopathies, gene expression, and chromatin organization. J. Cell Biol. 189:201-210.
11. Cam, H. P., et al. 2005. Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome. Nat. Genet. 37:809-819.
12. Chikashige, Y., et al. 2007. Gene expression and distribution of Swi6 in partial aneuploids of the fission yeast Schizosaccharomyces pombe. Cell Struct. Funct. 32:149-161. (Pubitemid 351483587)
13. Ciosk, R., et al. 2000. Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins. Mol. Cell 5:243-254. (Pubitemid 30628083)
14. Deardorff, M. A., et al. 2007. Mutations in cohesin complex members SMC3 and SMC1A cause a mild variant of Cornelia de Lange syndrome with predominant mental retardation. Am. J. Hum. Genet. 80:485-494.
15. Fischer, T., et al. 2009. Diverse roles of HP1 proteins in heterochromatin assembly and functions in fission yeast. Proc. Natl. Acad. Sci. U. S. A. 106:8998-9003.
16. Fourel, G., E. Lebrun, and E. Gilson. 2002. Protosilencers as building blocks for heterochromatin. Bioessays 24:828-835. (Pubitemid 35022188)
17. Gard, S., et al. 2009. Cohesinopathy mutations disrupt the subnuclear organization of chromatin. J. Cell Biol. 187:455-462.
18. Gaspar-Maia, A., et al. 2009. Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature 460:863-868.
19. Glynn, E. F., et al. 2004. Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. PLoS Biol. 2:E259.
20. Guacci, V., D. Koshland, and A. Strunnikov. 1997. A direct link between sister chromatid cohesion and chromosome condensation revealed through the analysis of MCD1 in S. cerevisiae. Cell 91:47-57. (Pubitemid 27431312)
21. Gullerova, M., and N. J. Proudfoot. 2008. Cohesin complex promotes transcriptional termination between convergent genes in S. pombe. Cell 132:983-995.
22. Hall, I. M., et al. 2002. Establishment and maintenance of a heterochromatin domain. Science 297:2232-2237.
23. Halme, A., S. Bumgarner, C. Styles, and G. R. Fink. 2004. Genetic and epigenetic regulation of the FLO gene family generates cell-surface variation in yeast. Cell 116:405-415.
24. Huang, C. E., M. Milutinovich, and D. Koshland. 2005. Rings, bracelet or snaps: fashionable alternatives for Smc complexes. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360:537-542.
25. Isaac, S., et al. 2007. Interaction of Epe1 with the heterochromatin assembly pathway in Schizosaccharomyces pombe. Genetics 175:1549-1560. (Pubitemid 46789943)
26. Kagey, M. H., et al. 2010. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467:430-435.
27. Kjaerulff, S., J. Davey, and O. Nielsen. 1994. Analysis of the structural genes encoding M-factor in the fission yeast Schizosaccharomyces pombe: identification of a third gene, mfm3. Mol. Cell. Biol. 14:3895-3905.
28. Köhrer, K., and H. Domdey. 1991. Preparation of high molecular weight RNA. Methods Enzymol. 194:398-405.
29. Krantz, I. D., et al. 2004. Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B. Nat. Genet. 36:631-635. (Pubitemid 38715992)
30. Lengronne, A., et al. 2004. Cohesin relocation from sites of chromosomal loading to places of convergent transcription. Nature 430:573-578. (Pubitemid 38998632)
31. Linder, T., et al. 2008. Two conserved modules of Schizosaccharomyces pombe Mediator regulate distinct cellular pathways. Nucleic Acids Res. 36: 2489-2504.
32. Liu, J., et al. 2009. Transcriptional dysregulation in NIPBL and cohesin mutant human cells. PLoS Biol. 7:e1000119.
33. Losada, A., M. Hirano, and T. Hirano. 1998. Identification of Xenopus SMC protein complexes required for sister chromatid cohesion. Genes Dev. 12: 1986-1997.
34. Michaelis, C., R. Ciosk, and K. Nasmyth. 1997. Cohesins: chromosomal proteins that prevent premature separation of sister chromatids. Cell 91:35-45. (Pubitemid 27431311)
35. Misulovin, Z., et al. 2008. Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome. Chromosoma 117:89-102.
36. Moreno, S., A. Klar, and P. Nurse. 1991. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194:795-823.
37. Musio, A., et al. 2006. X-linked Cornelia de Lange syndrome owing to SMC1L1 mutations. Nat. Genet. 38:528-530.
38. Nakayama, J., J. C. Rice, B. D. Strahl, C. D. Allis, and S. I. Grewal. 2001. Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science 292:110-113.
39. Nasmyth, K., and C. H. Haering. 2009. Cohesin: its roles and mechanisms. Annu. Rev. Genet. 43:525-558.
40. Nonaka, N., et al. 2002. Recruitment of cohesin to heterochromatic regions by Swi6/HP1 in fission yeast. Nat. Cell Biol. 4:89-93.
41. Parelho, V., et al. 2008. Cohesins functionally associate with CTCF on mammalian chromosome arms. Cell 132:422-433.
42. Pauli, A., et al. 2008. Cell-type-specific TEV protease cleavage reveals cohesin functions in Drosophila neurons. Dev. Cell 14:239-251. (Pubitemid 351189182)
43. Peters, J. M., A. Tedeschi, and J. Schmitz. 2008. The cohesin complex and its roles in chromosome biology. Genes Dev. 22:3089-3114.
44. Rollins, R. A., M. Korom, N. Aulner, A. Martens, and D. Dorsett. 2004. Drosophila Nipped-B protein supports sister chromatid cohesion and opposes the stromalin/Scc3 cohesion factor to facilitate long-range activation of the cut gene. Mol. Cell. Biol. 24:3100-3111. (Pubitemid 38452056)
45. Rollins, R. A., P. Morcillo, and D. Dorsett. 1999. Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes. Genetics 152:577-593. (Pubitemid 29272711)
46. Schaaf, C. A., et al. 2009. Regulation of the Drosophila Enhancer of split and invected-engrailed gene complexes by sister chromatid cohesion proteins. PLoS One 4:e6202.
47. Schmidt, C. K., N. Brookes, and F. Uhlmann. 2009. Conserved features of cohesin binding along fission yeast chromosomes. Genome Biol. 10:R52.
48. Schmitt, M. E., T. A. Brown, and B. L. Trumpower. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res. 18:3091-3092.
49. Schuldiner, O., et al. 2008. piggyBac-based mosaic screen identifies a post-mitotic function for cohesin in regulating developmental axon pruning. Dev. Cell 14:227-238. (Pubitemid 351189171)
50. Skibbens, R. V., J. Marzillier, and L. Eastman. 25 April 2010. Cohesins coordinate gene transcriptions of related function within Saccharomyces cerevisiae. Cell Cycle 9:1601-1606.
51. Tomonaga, T., et al. 2000. Characterization of fission yeast cohesin: essential anaphase proteolysis of Rad21 phosphorylated in the S phase. Genes Dev. 14:2757-2770. (Pubitemid 32531202)
52. Tonkin, E. T., T. J. Wang, S. Lisgo, M. J. Bamshad, and T. Strachan. 2004. NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome. Nat. Genet. 36:636-641.
53. Vermaak, D., and H. S. Malik. 2009. Multiple roles for heterochromatin protein 1 genes in Drosophila. Annu. Rev. Genet. 43:467-492.
54. Wendt, K. S., et al. 2008. Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451:796-801. (Pubitemid 351253176)
55. Wirén, M., et al. 2005. Genomewide analysis of nucleosome density histone acetylation and HDAC function in fission yeast. EMBO J. 24:2906-2918. (Pubitemid 43079894)
56. Wood, A. J., A. F. Severson, and B. J. Meyer. 2010. Condensin and cohesin complexity: the expanding repertoire of functions. Nat. Rev. Genet. 11:391-404.