-
2
-
-
34147213066
-
-
Engel, G. S.; Calhoun, T. R.; Read, E. L.; Ahn, T. K.; Mancal, T.; Cheng, Y. C.; Blankenship, R. E.; Fleming, G. R. Nature 2007, 446, 782
-
(2007)
Nature
, vol.446
, pp. 782
-
-
Engel, G.S.1
Calhoun, T.R.2
Read, E.L.3
Ahn, T.K.4
Mancal, T.5
Cheng, Y.C.6
Blankenship, R.E.7
Fleming, G.R.8
-
3
-
-
34250185415
-
-
Lee, H.; Cheng, Y. C.; Fleming, G. R. Science 2007, 316, 1462
-
(2007)
Science
, vol.316
, pp. 1462
-
-
Lee, H.1
Cheng, Y.C.2
Fleming, G.R.3
-
4
-
-
76249103854
-
-
Collini, E.; Wong, C. Y.; Wilk, K. E.; Curmi, P. M. G.; Brumer, P.; Scholes, G. D. Nature 2010, 463, 644
-
(2010)
Nature
, vol.463
, pp. 644
-
-
Collini, E.1
Wong, C.Y.2
Wilk, K.E.3
Curmi, P.M.G.4
Brumer, P.5
Scholes, G.D.6
-
5
-
-
34547249785
-
-
Scholes, G. D.; Curutchet, C.; Mennucci, B.; Cammi, R.; Tomasi, J. J. Phys. Chem. B 2007, 111, 6978
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 6978
-
-
Scholes, G.D.1
Curutchet, C.2
Mennucci, B.3
Cammi, R.4
Tomasi, J.5
-
6
-
-
84962440469
-
-
Curutchet, C.; Scholes, G. D.; Mennucci, B.; Cammi, R. J. Phys. Chem. B 2007, 111, 13253
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 13253
-
-
Curutchet, C.1
Scholes, G.D.2
Mennucci, B.3
Cammi, R.4
-
7
-
-
67849118682
-
-
Curutchet, C.; Muñoz-Losa, A.; Monti, S.; Kongsted, J.; Scholes, G. D.; Mennucci, B. J. Chem. Theory Comput. 2009, 5, 1838
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 1838
-
-
Curutchet, C.1
Muñoz-Losa, A.2
Monti, S.3
Kongsted, J.4
Scholes, G.D.5
Mennucci, B.6
-
8
-
-
77955221910
-
-
Novoderezhkin, V. I.; Doust, A. B.; Curutchet, C.; Scholes, G. D.; van Grondelle, R. Biophys. J. 2010, 99, 344
-
(2010)
Biophys. J.
, vol.99
, pp. 344
-
-
Novoderezhkin, V.I.1
Doust, A.B.2
Curutchet, C.3
Scholes, G.D.4
Van Grondelle, R.5
-
10
-
-
0037164210
-
-
Hammer, A.; Schumann, R.; Schubert, H. Aquat. Microb. Ecol. 2002, 29, 287
-
(2002)
Aquat. Microb. Ecol.
, vol.29
, pp. 287
-
-
Hammer, A.1
Schumann, R.2
Schubert, H.3
-
11
-
-
84962419783
-
-
Iozzi, M. F.; Mennucci, B.; Tomasi, J.; Cammi, R. J. Chem. Phys. 2004, 120, 7029
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 7029
-
-
Iozzi, M.F.1
Mennucci, B.2
Tomasi, J.3
Cammi, R.4
-
14
-
-
7044235387
-
-
Doust, A. B.; Marai, C. N. J.; Harrop, S. J.; Wilk, K. E.; Curmi, P. M. G.; Scholes, G. D. J. Mol. Biol. 2004, 344, 135
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 135
-
-
Doust, A.B.1
Marai, C.N.J.2
Harrop, S.J.3
Wilk, K.E.4
Curmi, P.M.G.5
Scholes, G.D.6
-
15
-
-
0033529844
-
-
Wilk, K. E.; Harrop, S. J.; Jankova, L.; Edler, D.; Keenan, G.; Sharples, F.; Hiller, R. G.; Curmi, P. M. G. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 8901
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 8901
-
-
Wilk, K.E.1
Harrop, S.J.2
Jankova, L.3
Edler, D.4
Keenan, G.5
Sharples, F.6
Hiller, R.G.7
Curmi, P.M.G.8
-
16
-
-
79952263015
-
-
H++ server; Virginia Tech; (accessed 04/20/09).
-
Onufriev, A.; Gordon, J.; Myers, J.; Anandakrishnan, R.; Folta, T.; Shoja, V.; Heath, L. S.; Shaffer, C.; Back, G.; Rountree, D.; Ruscio, J. Z.; Pevzner, Y. H++ server; Virginia Tech; http://biophysics.cs.vt.edu/H++ (accessed 04/20/09).
-
-
-
Onufriev, A.1
Gordon, J.2
Myers, J.3
Anandakrishnan, R.4
Folta, T.5
Shoja, V.6
Heath, L.S.7
Shaffer, C.8
Back, G.9
Rountree, D.10
Ruscio, J.Z.11
Pevzner, Y.12
-
17
-
-
23144457576
-
-
Gordon, J. C.; Myers, J. B.; Folta, T.; Shoja, V.; Heath, L. S.; Onufriev, A. Nucleic Acids Res. 2005, 33, W368
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 368
-
-
Gordon, J.C.1
Myers, J.B.2
Folta, T.3
Shoja, V.4
Heath, L.S.5
Onufriev, A.6
-
19
-
-
0004016501
-
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
20
-
-
34247186195
-
-
University of California: San Francisco.
-
Case, D. A. AMBER 9, University of California: San Francisco, 2006.
-
(2006)
AMBER 9
-
-
Case, D.A.1
-
21
-
-
0001398008
-
-
Wang, J. M.; Cieplak, P.; Kollman, P. A. J. Comput. Chem. 2000, 21, 1049
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049
-
-
Wang, J.M.1
Cieplak, P.2
Kollman, P.A.3
-
22
-
-
33748518255
-
-
Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.; Simmerling, C. Proteins 2006, 65, 712
-
(2006)
Proteins
, vol.65
, pp. 712
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
23
-
-
2942532422
-
-
Wang, J. M.; Wolf, R. M.; Caldwell, J. W.; Kollman, P. A.; Case, D. A. J. Comput. Chem. 2004, 25, 1157
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157
-
-
Wang, J.M.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
25
-
-
4644298111
-
-
Gagliardi, L.; Lindh, R.; Karlstrom, G. J. Chem. Phys. 2004, 121, 4494
-
(2004)
J. Chem. Phys.
, vol.121
, pp. 4494
-
-
Gagliardi, L.1
Lindh, R.2
Karlstrom, G.3
-
26
-
-
0141991885
-
-
Karlstrom, G.; Lindh, R.; Malmqvist, P. A.; Roos, B. O.; Ryde, U.; Veryazov, V.; Widmark, P. O.; Cossi, M.; Schimmelpfennig, B.; Neogrady, P.; Seijo, L. Comput. Mater. Sci. 2003, 28, 222
-
(2003)
Comput. Mater. Sci.
, vol.28
, pp. 222
-
-
Karlstrom, G.1
Lindh, R.2
Malmqvist, P.A.3
Roos, B.O.4
Ryde, U.5
Veryazov, V.6
Widmark, P.O.7
Cossi, M.8
Schimmelpfennig, B.9
Neogrady, P.10
Seijo, L.11
-
28
-
-
34247378247
-
-
Nielsen, C. B.; Christiansen, O.; Mikkelsen, K. V.; Kongsted, J. J. Chem. Phys. 2007, 126, 154112
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 154112
-
-
Nielsen, C.B.1
Christiansen, O.2
Mikkelsen, K.V.3
Kongsted, J.4
-
29
-
-
84961980477
-
-
Tomasi, J.; Mennucci, B.; Cammi, R. Chem. Rev. 2005, 105, 2999
-
(2005)
Chem. Rev.
, vol.105
, pp. 2999
-
-
Tomasi, J.1
Mennucci, B.2
Cammi, R.3
-
30
-
-
0000405834
-
-
Jordanides, X. J.; Lang, M. J.; Song, X. Y.; Fleming, G. R. J. Phys. Chem. B 1999, 103, 7995
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 7995
-
-
Jordanides, X.J.1
Lang, M.J.2
Song, X.Y.3
Fleming, G.R.4
-
31
-
-
0042041206
-
-
Rappe, A. K.; Casewit, C. J.; Colwell, K. S.; Goddard, W. A.; Skiff, W. M. J. Am. Chem. Soc. 1992, 114, 10024
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 10024
-
-
Rappe, A.K.1
Casewit, C.J.2
Colwell, K.S.3
Goddard, W.A.4
Skiff, W.M.5
-
34
-
-
79952265412
-
-
We note here that the chromophore-chromopore distances averaged along the MD trajectory differ in all cases by less than 1.4 Å with respect to the crystal structure. Therefore, performing continuum calculations on MD structures other than the crystal would introduce no significant differences in the values of effective dielectric permittivities obtained.
-
We note here that the chromophore-chromopore distances averaged along the MD trajectory differ in all cases by less than 1.4 Å with respect to the crystal structure. Therefore, performing continuum calculations on MD structures other than the crystal would introduce no significant differences in the values of effective dielectric permittivities obtained.
-
-
-
-
35
-
-
33744484039
-
-
Hansen, T.; Jensen, L.; Astrand, P. O.; Mikkelsen, K. V. J. Chem. Theory Comput. 2005, 1, 626
-
(2005)
J. Chem. Theory Comput.
, vol.1
, pp. 626
-
-
Hansen, T.1
Jensen, L.2
Astrand, P.O.3
Mikkelsen, K.V.4
-
36
-
-
0029878720
-
-
Humphrey, W.; Dalke, A.; Schulten, K. J. Mol. Graph. 1996, 14, 33
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 33
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
38
-
-
34548160396
-
-
Mirkovic, T.; Doust, A. B.; Kim, J.; Wilk, K. E.; Curutchet, C.; Mennucci, B.; Cammi, R.; Curmi, P. M. G.; Scholes, G. D. Photochem. Photobiol. Sci. 2007, 6, 964
-
(2007)
Photochem. Photobiol. Sci.
, vol.6
, pp. 964
-
-
Mirkovic, T.1
Doust, A.B.2
Kim, J.3
Wilk, K.E.4
Curutchet, C.5
Mennucci, B.6
Cammi, R.7
Curmi, P.M.G.8
Scholes, G.D.9
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