Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 879, Issue 9-10, 2011, Pages 610-614

  Gokce, Emine ^a   Andrews, Genna L ^a   Dean, Ralph A ^a   Muddiman, David C ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Fractionation methods; Mass spectrometry; Proteomics; RP HPLC

Indexed keywords

ANALYSIS TIME; COMPREHENSIVE EXAMINATION; ELUTION GRADIENT; FALSE DISCOVERY RATE; FRACTIONATION METHODS; MICROLITERS; NANO-LC; NANO-LC-MS; OFFLINE; ONE DIMENSION; PROTEOMES; PROTEOMICS; REVERSED PHASE; REVERSED PHASE LIQUID-CHROMATOGRAPHY; RP-HPLC; SACCHAROMYCES CEREVISIAE; TWO-DIMENSION;

COLUMN CHROMATOGRAPHY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HIGH PRESSURE LIQUID CHROMATOGRAPHY; LIQUIDS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; YEAST;

PROTEINS;

PROTEOME;

ARTICLE; CLINICAL EVALUATION; CONTROLLED STUDY; NANO FLOW REVERSED PHASE LIQUID CHROMATOGRAPHY MASS SPECTROMETRY; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN ANALYSIS; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; REVERSED PHASE LIQUID CHROMATOGRAPHY; SACCHAROMYCES CEREVISIAE;

CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CHROMATOGRAPHY, REVERSE-PHASE; MASS SPECTROMETRY; NANOTECHNOLOGY; PEPTIDE FRAGMENTS; PROTEOME; PROTEOMICS; SACCHAROMYCES CEREVISIAE PROTEINS;

FUNGI; SACCHAROMYCES CEREVISIAE;

EID: 79952187463     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jchromb.2011.01.032     Document Type: Article

References (24)

1. Shevchenko A., Jensen O.N., Podtelejnikov A.V., Sagliocco F., Wilm M., Vorm O., Mortensen P., Boucherie H., Mann M. Proc. Natl. Acad. Sci. U. S. A. 1996, 93:14440.
2. Klose J., Kobalz U. Electrophoresis 1995, 16:1034.
3. de Godoy L.M.F., Olsen J.V., Cox J., Nielsen M.L., Hubner N.C., Frohlich F., Walther T.C., Mann M. Nature 2008, 455:1251.
4. Lee C.L., Hsiao H.H., Lin C.W., Wu S.P., Huang S.Y., Wu C.Y., Wang A.H.J., Khoo K.H. Proteomics 2003, 3:2472.
5. Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J.X., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:12130.
6. Michel P.E., Reymond F., Arnaud I.L., Josserand J., Girault H.H., Rossier J.S. Electrophoresis 2003, 24:3.
7. Heller M., Michel P.E., Morier P., Crettaz D., Wenz C., Tissot J.D., Reymond F., Rossier J.S. Electrophoresis 2005, 26:1174.
8. Heller M., Ye M.L., Michel P.E., Morier P., Stalder D., Junger M.A., Aebersold R., Reymond F.R., Rossier J.S. J. Proteome Res. 2005, 4:2273.
9. Michel P.E., Crettaz D., Morier P., Heller M., Gallot D., Tissot J.D., Reymond F., Rossier J.S. Electrophoresis 2006, 27:1169.
10. Horth P., Miller C.A., Preckel T., Wenz C. Mol. Cell. Proteomics 2006, 5:1968.
11. Tran J.C., Doucette A.A. Anal. Chem. 2009, 81:6201.
12. Peng J.M., Elias J.E., Thoreen C.C., Licklider L.J., Gygi S.P. J. Proteome Res. 2003, 2:43.
13. Vollmer M., Horth P., Nagele E. Anal. Chem. 2004, 76:5180.
14. Shen Y.F., Jacobs J.M., Camp D.G., Fang R.H., Moore R.J., Smith R.D., Xiao W.Z., Davis R.W., Tompkins R.G. Anal. Chem. 2004, 76:1134.
15. Wolters D.A., Washburn M.P., Yates J.R. Anal. Chem. 2001, 73:5683.
16. Washburn M.P., Wolters D., Yates J.R. Nat. Biotechnol. 2001, 19:242.
17. Dai J., Shieh C.H., Sheng Q.H., Zhou H., Zeng R. Anal. Chem. 2005, 77:5793.
18. Toll H., Oberacher H., Swart R., Huber C.G. ×matogr. A 2005, 1079:274.
19. Francois I., Cabooter D., Sandra K., Lynen F., Desmet G., Sandra P. J. Sep. Sci. 2009, 32:1137.
20. Mondello L., Donato P., Cacciola F., Fanali C., Dugo P. J. Sep. Sci. 2010, 33:1454.
21. Gilar M., Olivova P., Daly A.E., Gebler J.C. Anal. Chem. 2005, 77:6426.
22. Scopes R.K. Anal. Biochem. 1974, 59:277.
23. Andrews G.L., Shuford C.M., Burnett J.C., Hawkridge A.M., Muddiman D.C. J. Chromatogr. B 2009, 877:948.
24. Benjamini Y., Hochberg Y. J. R. Stat. Soc. Ser. B: Methodol. 1995, 57:289.