The discussion goes on: What is the role of Euryarchaeota in humans?

Archaea

Volumn 2010, Issue , 2010, Pages

  Horz, H P ^a   Conrads, G ^a  

^a UNIVERSITY HOSPITAL RWTH AACHEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); EURYARCHAEOTA; METHANOBREVIBACTER SMITHII; METHANOSPHAERA STADTMANAE;

ARCHAEBACTERIUM; BIODIVERSITY; CLASSIFICATION; GASTROINTESTINAL TRACT; HUMAN; ISOLATION AND PURIFICATION; METAGENOME; MICROBIOLOGY; MOUTH; PATHOGENICITY; PHYSIOLOGY; REVIEW;

ARCHAEA; BIODIVERSITY; GASTROINTESTINAL TRACT; HUMANS; METAGENOME; MOUTH;

EID: 79952145194     PISSN: 14723646     EISSN: None     Source Type: Journal    
DOI: 10.1155/2010/967271     Document Type: Review

References (55)

1. Eckburg P. B., Bik E. M., Bernstein C. N., Purdom E., Dethlefsen L., Sargent M., Gill S. R., Nelson K. E., Relman D. A., Diversity of the human intestinal microbial (Pubitemid 40807514)
2. Paster B. J., Boches S. K., Galvin J. L., Ericson R. E., Lau C. N., Levanos V. A., Sahasrabudhe A., Dewhirst F. E., Bacterial diversity in human subgingival plaque Journal of Bacteriology 2001 183 12 3770 3783 (Pubitemid 32510445)
3. Maukonen J., Mtt J., Suihko M. L., Saarela M., Intra-individual diversity and similarity of salivary and faecal microbiota Journal of Medical Microbiology 2008 57 12 1560 1568
4. Rajili-Stojanovi M., Smidt H., de Vos W. M., Diversity of the human gastrointestinal tract microbiota revisited Environmental Microbiology 2007 9 9 2125 2136 (Pubitemid 47222128)
5. Cavicchioli R., Curmi P. M. G., Saunders N., Thomas T., Pathogenic archaea: do they exist? BioEssays 2003 25 11 1119 1128 (Pubitemid 37411771)
6. Conway de Macario E., Macario A. J. L., Methanogenic archaea in health and disease: a novel paradigm of microbial pathogenesis International Journal of Medical Microbiology 2009 299 2 99 108
7. Eckburg P. B., Lepp P. W., Relman D. A., Archaea and their potential role in human disease Infection and Immunity 2003 71 2 591 596 (Pubitemid 36157304)
8. Nakamura N., Lin H. C., McSweeney C. S., Mackie R. I., Gaskins H. R., Mechanisms of microbial hydrogen disposal in the human colon and implications for health and disease Annual Review of Food Science and Technology 2010 1 1 363 395
9. Michalke K., Schmidt A., Huber B., Meyer J., Sulkowski M., Hirner A. V., Boertz J., Mosel F., Dammann P., Hilken G., Hedrich H. J., Dorsch M., Rettenmeier A. W., Hensel R., Role of intestinal microbiota in transformation of bismuth and other metals and metalloids into volatile methyl and hydride derivatives in humans and mice Applied and Environmental Microbiology 2008 74 10 3069 3075 (Pubitemid 351747011)
10. Meyer J., Michalke K., Kouril T., Hensel R., Volatilisation of metals and metalloids: an inherent feature of methanoarchaea? Systematic and Applied Microbiology 2008 31 2 81 87
11. Vianna M. E., Holtgraewe S., Seyfarth I., Conrads G., Horz H. P., Quantitative analysis of three hydrogenotrophic microbial groups, methanogenic archaea, sulfate-reducing bacteria, and acetogenic bacteria, within plaque biofilms associated with human periodontal disease Journal of Bacteriology 2008 190 10 3779 3785
12. Vianna M. E., Conrads G., Gomes B. P. F. A., Horz H. P., Identification and quantification of archaea involved in primary endodontic infections Journal of Clinical Microbiology 2006 44 4 1274 1282
13. Vickerman M. M., Brossard K. A., Funk D. B., Jesionowski A. M., Gill S. R., Phylogenetic analysis of bacterial and archaeal species in symptomatic and asymptomatic endodontic infections Journal of Medical Microbiology 2007 56 1 110 118 (Pubitemid 46036283)
14. Jiang Y. T., Xia W. W., Li C. L., Jiang W., Liang J. P., Preliminary study of the presence and association of bacteria and archaea in teeth with apical periodontitis International Endodontic Journal 2009 42 12 1096 1103
15. Yamabe K., Maeda H., Kokeguchi S., Tanimoto I., Sonoi N., Asakawa S., Takashiba S., Distribution of Archaea in Japanese patients with periodontitis and humoral immune response to the components FEMS Microbiology Letters 2008 287 1 69 75
16. Yamabe K., Maeda H., Kokeguchi S., Soga Y., Meguro M., Naruishi K., Asakawa S., Takashiba S., Antigenic group II chaperonin in Methanobrevibacter oralis may cross-react with human chaperonin CCT Molecular Oral Microbiology 2010 25 2 112 122
17. Zgel U., Kaufmann S. H. E., Immune response against heat shock proteins in infectious diseases Immunobiology 1999 201 1 22 35 (Pubitemid 29457298)
18. Zgel U., Kaufmann S. H. E., Role of heat shock proteins in protection from and pathogenesis of infectious diseases Clinical Microbiology Reviews 1999 12 1 19 39 (Pubitemid 29055952)
19. Roccarina D., Lauritano E. C., Gabrielli M., Franceschi F., Ojetti V., Gasbarrini A., The role of methane in intestinal diseases American Journal of Gastroenterology 2010 105 6 1250 1256
20. Abell G. C. J., Conlon M. A., Mcorist A. L., Methanogenic archaea in adult human faecal samples are inversely related to butyrate concentration Microbial Ecology in Health and Disease 2006 18 3-4 154 160 (Pubitemid 44946993)
21. Avivi-Green C., Polak-Charcon S., Madar Z., Schwartz B., Apoptosis cascade proteins are regulated in vivo by high intracolonic butyrate concentration: correlation with colon cancer inhibition Oncology Research 2000 12 2 83 95
22. Zgouras D., Wchtershuser A., Frings D., Stein J., Butyrate impairs intestinal tumor cell-induced angiogenesis by inhibiting HIF- 1 nuclear translocation Biochemical and Biophysical Research Communications 2003 300 4 832 838
23. Samuel B. S., Gordon J. I., A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism Proceedings of the National Academy of Sciences of the United States of America 2006 103 26 10011 10016 (Pubitemid 43993614)
24. Zhang H., DiBaise J. K., Zuccolo A., Kudrna D., Braidotti M., Yu Y., Parameswaran P., Crowell M. D., Wing R., Rittmann B. E., Krajmalnik-Brown R., Human gut microbiota in obesity and after gastric bypass Proceedings of the National Academy of Sciences of the United States of America 2009 106 7 2365 2370
25. Armougom F., Henry M., Vialettes B., Raccah D., Raoult D., Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients PLoS One 2009 4 9
26. Vianna M. E., Conrads G., Gomes B. P. F. A., Horz H. P., T-RFLP-based mcrA gene analysis of methanogenic archaea in association with oral infections and evidence of a novel Methanobrevibacter phylotype Oral Microbiology and Immunology 2009 24 5 417 422
27. Kulik E. M., Sandmeier H., Hinni K., Meyer J., Identification of archaeal rDNA from subgingival dental plaque by PCR amplification and sequence analysis FEMS Microbiology Letters 2001 196 2 129 133 (Pubitemid 32232249)
28. Scanlan P. D., Shanahan F., Marchesi J. R., Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis BMC Microbiology 2008 8, article no. 79
29. Mihajlovski A., Alric M., Brugre J. F., A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene Research in Microbiology 2008 159 7-8 516 521
30. Mihajlovski A., Dore J., Levenez F., Alric M., Brugere J. F., Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity Environmental Microbiology Reports 2010 2 2 272 280
31. Li C. L., Liu D. L., Jiang Y. T., Zhou Y. B., Zhang M. Z., Jiang W., Liu B., Liang J. P., Prevalence and molecular diversity of Archaea in subgingival pockets of periodontitis patients Oral Microbiology and Immunology 2009 24 4 343 346
32. Oxley A. P. A., Lanfranconi M. P., Wrdemann D., Ott S., Schreiber S., McGenity T. J., Timmis K. N., Nogales B., Halophilic archaea in the human intestinal mucosa Environmental Microbiology 2010 12 9 2398 2410
33. Nam Y. D., Chang HO. W., Kim K. H., Roh S. W., Kim M. S., Jung MI. J., Lee SI. W., Kim J. Y., Yoon J. H., Bae J. W., Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people Journal of Microbiology 2008 46 5 491 501
34. Horz H. P., Scheer S., Huenger F., Vianna M. E., Conrads G., Selective isolation of bacterial DNA from human clinical specimens Journal of Microbiological Methods 2008 72 1 98 102 (Pubitemid 350309683)
35. Turnbaugh P. J., Ley R. E., Hamady M., Fraser-Liggett C. M., Knight R., Gordon J. I., The human microbiome project Nature 2007 449 7164 804 810 (Pubitemid 47598620)
36. Dridi B., Henry M., El Khchine A., Raoult D., Drancourt M., High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol PLoS One 2009 4 9
37. Kubota K., Imachi H., Kawakami S., Nakamura K., Harada H., Ohashi A., Evaluation of enzymatic cell treatments for application of CARD-FISH to methanogens Journal of Microbiological Methods 2008 72 1 54 59 (Pubitemid 350309682)
38. Salonen A., Nikkil J., Jalanka-Tuovinen J., Immonen O., Rajili-Stojanovi M., Kekkonen R. A., Palva A., de Vos W. M., Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis Journal of Microbiological Methods 2010 81 2 127 134
39. Rieu-Lesme F., Delbs C., Sollelis L., Recovery of partial 16S rDNA sequences suggests the presence of Crenarchaeota in the human digestive ecosystem Current Microbiology 2005 51 5 317 321 (Pubitemid 41586782)
40. Ochsenreiter T., Selezi D., Quaiser A., Bonch-Osmolovskaya L., Schleper C., Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR Environmental Microbiology 2003 5 9 787 797 (Pubitemid 37056863)
41. Burggraf S., Heyder P., Eis N., A pivotal Archaea group Nature 1997 385 6619 780 (Pubitemid 27106057)
42. Huber H., Hohn M. J., Rachel R., Fuchs T., Wimmer V. C., Stetter K. O., A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont Nature 2002 417 6884 63 67 (Pubitemid 34498815)
43. Aller J. Y., Kemp P. F., Are Archaea inherently less diverse than Bacteria in the same environments? FEMS Microbiology Ecology 2008 65 1 74 87 (Pubitemid 351832105)
44. He X., Tian Y., Guo L., Ano T., Lux R., Zusman D. R., Shi W., In vitro communities derived from oral and gut microbial floras inhibit the growth of bacteria of foreign origins Microbial Ecology 2010 1 12
45. Brusa T., Ferrari F., Canzi E., Methanogenic bacteria: presence in foodstuffs Journal of Basic Microbiology 1998 38 2 79 84 (Pubitemid 28257857)
46. Roh S. W., Kim K. H., Nam Y. D., Chang HO. W., Park E. J., Bae J. W., Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing ISME Journal 2010 4 1 1 16
47. Martin W., Pathogenic archaebacteria: do they not exist because archaebacteria use different vitamins? BioEssays 2004 26 5 592 593 (Pubitemid 38684974)
48. Samuel B. S., Hansen E. E., Manchester J. K., Coutinho P. M., Henrissat B., Fulton R., Latreille P., Kim K., Wilson R. K., Gordon J. I., Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut Proceedings of the National Academy of Sciences of the United States of America 2007 104 25 10643 10648 (Pubitemid 47185718)
49. Vianna M. E., Conrads G., Gomes B. P. F. A., Horz H. P., Quantification and characterization of Synergistes in endodontic infections Oral Microbiology and Immunology 2007 22 4 260 265 (Pubitemid 47019886)
50. Hatamoto M., Imachi H., Yashiro Y., Ohashi A., Harada H., Detection of active butyrate-degrading microorganisms in methanogenic sludges by RNA-based stable isotope probing Applied and Environmental Microbiology 2008 74 11 3610 3614 (Pubitemid 351812818)
51. Lueders T., Pommerenke B., Friedrich M. W., Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil Applied and Environmental Microbiology 2004 70 10 5778 5786 (Pubitemid 39471817)
52. Schreiber F., Stief P., Gieseke A., Heisterkamp I. M., Verstraete W., de Beer D., Stoodley P., Denitrification in human dental plaque BMC Biology 2010 8, article no. 24
53. Lange M., Westermann P., Ahring B. K., Archaea in protozoa and metazoa Applied Microbiology and Biotechnology 2005 66 5 465 474
54. Shinzato N., Matsumoto T., Yamaoka I., Oshima T., Yamagishi A., Phylogenetic diversity of symbiotic methanogens living in the hindgut of the lower termite Reticulitermes speratus analyzed by PCR and in situ hybridization Applied and Environmental Microbiology 1999 65 2 837 840 (Pubitemid 29075140)
55. Qin J., Li R., Raes J., Arumugam M., Burgdorf K. S., Manichanh C., Nielsen T., Pons N., Levenez F., Yamada T., Mende D. R., Li J., Xu J., Li S., Li D., Cao J., Wang B., Liang H., Zheng H., Xie Y., Tap J., Lepage P., Bertalan M., Batto J. -M., Hansen T., Le Paslier D., Linneberg A., Nielsen H. B., Pelletier E., Renault P., Sicheritz-Ponten T., Turner K., Zhu H., Yu C., Li S., Jian M., Zhou Y., Li Y., Zhang X., Li S., Qin N., Yang H., Wang J., Brunak S., Dor J., Guarner F., Kristiansen K., Pedersen O., Parkhill J., Weissenbach J., Bork P., Ehrlich S. D., Wang J., Antolin M., Artiguenave F., Blottiere H., Borruel N., Bruls T., Casellas F., Chervaux C., Cultrone A., Delorme C., Denariaz G., Dervyn R., Forte M., Friss C., Van De Guchte M., Guedon E., Haimet F., Jamet A., Juste C., Kaci G., Kleerebezem M., Knol J., Kristensen M., Layec S., Le Roux K., Leclerc M., Maguin E., Melo Minardi R., Oozeer R., Rescigno M., Sanchez N., Tims S., Torrejon T., Varela E., De Vos W., Winogradsky Y., Zoetendal E., A human gut microbial gene catalogue established by metagenomic sequencing Nature 2010 464 7285 59 65