Denitrification in human dental plaque

BMC Biology

Volumn 8, Issue , 2010, Pages

  Schreiber, Frank ^a   Stief, Peter ^a   Gieseke, Armin ^a   Heisterkamp, Ines M ^a   Verstraete, Willy ^b   de Beer, Dirk ^a   Stoodley, Paul ^c,d  

^a MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY   (Germany)

^b GHENT UNIVERSITY   (Belgium)

^c ALLEGHENY SINGER RESEARCH INSTITUTE   (United States)

^d UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

NITRATE REDUCTASE; NITRIC OXIDE; NITROGEN; NITROUS OXIDE;

ARTICLE; BIOFILM; CHEMISTRY; DNA SEQUENCE; ENZYMOLOGY; GENETICS; HUMAN; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; TOOTH PLAQUE;

BASE SEQUENCE; BIOFILMS; DENTAL PLAQUE; HUMANS; MOLECULAR SEQUENCE DATA; NITRATE REDUCTASE; NITRIC OXIDE; NITROGEN ISOTOPES; NITROUS OXIDE; SEQUENCE ANALYSIS, DNA;

EID: 77952254049     PISSN: None     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/1741-7007-8-24     Document Type: Article

References (62)

1. Dethlefsen L, McFall-Ngai M, Relman DA. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 2007, 449(7164):811-818. 10.1038/nature06245, 17943117.
2. Vianna ME, Holtgraewe S, Seyfarth I, Conrads G, Horz HP. Quantitative analysis of three hydrogenotrophic microbial groups, methanogenic archaea, sulfate-reducing bacteria, and acetogenic bacteria, within plaque biofilms associated with human periodontal disease. J Bacteriol 2008, 190(10):3779-3785. 10.1128/JB.01861-07, 2394984, 18326571.
3. Lepp PW, Brinig MM, Ouverney CC, Palm K, Armitage GC, Relman DA. Methanogenic Archaea and human periodontal disease. Proc Natl Acad Sci USA 2004, 101(16):6176-6181. 10.1073/pnas.0308766101, 395942, 15067114.
4. Gibson GR, Cummings JH, Macfarlane GT, Allison C, Segal I, Vorster HH, Walker ARP. Alternative Pathways for Hydrogen Disposal During Fermentation in the Human Colon. Gut 1990, 31(6):679-683. 10.1136/gut.31.6.679, 1378495, 2379871.
5. Egert M, de Graaf AA, Smidt H, de Vos WM, Venema K. Beyond diversity: functional microbiomics of the human colon. Trends Microbiol 2006, 14(2):86-91. 10.1016/j.tim.2005.12.007, 16406528.
6. Zumft WG. Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 1997, 61(4):533. 232623, 9409151.
7. Lundberg JO, Weitzberg E, Cole JA, Benjamin N. Opinion - Nitrate, bacteria and human health. Nat Rev Microbiol 2004, 2(7):593-602. 10.1038/nrmicro929, 15197394.
8. Lundberg JO, Weitzberg E, Gladwin MT. The nitrate-nitrite-nitric oxide pathway in physiology and therapeutics. Nat Rev Drug Discov 2008, 7(2):156-167. 10.1038/nrd2466, 18167491.
9. Straub KL, Benz M, Schink B, Widdel F. Anaerobic, nitrate-dependent microbial oxidation of ferrous iron. Appl Environ Microbiol 1996, 62(4):1458-1460. 1388836, 16535298.
10. Baumann B, Snozzi M, Zehnder AJB, vanderMeer JR. Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes. J Bacteriol 1996, 178(15):4367-4374. 178201, 8755862.
11. Goretski J, Zafiriou OC, Hollocher TC. Steady-State Nitric-Oxide Concentrations During Denitrification. J Biol Chem 1990, 265(20):11535-11538.
12. Conrad R. Soil Microbial Processes and the Cycling of Atmospheric Trace Gases. Philos Trans R Soc Lond Ser A-Math Phys Eng Sci 1995, 351(1696):219-230.
13. Schreiber F, Loeffler B, Polerecky L, Kuypers MMM, de Beer D. Mechanisms of transient nitric oxide and nitrous oxide production in a complex biofilm. Isme J 2009, 3(11):1301-1313. 10.1038/ismej.2009.55, 19516281.
14. Stief P, Poulsen M, Nielsen LP, Brix H, Schramm A. Nitrous oxide emission by aquatic macrofauna. Proc Natl Acad Sci USA 2009, 106(11):4296-4300. 10.1073/pnas.0808228106, 2651200,2651200, 19255427.
15. Horn MA, Schramm A, Drake HL. The earthworm gut: An ideal habitat for ingested N2O-producing microorganisms. Appl Environ Microbiol 2003, 69(3):1662-1669. 10.1128/AEM.69.3.1662-1669.2003, 150078, 12620857.
16. Kolenbrander PE, Andersen RN, Blehert DS, Egland PG, Foster JS, Palmer RJ. Communication among oral bacteria. Microbiol Mol Biol Rev 2002, 66(3):486. 10.1128/MMBR.66.3.486-505.2002, 120797, 12209001.
17. Doel JJ, Benjamin N, Hector MP, Rogers M, Allaker RP. Evaluation of bacterial nitrate reduction in the human oral cavity. Eur J Oral Sci 2005, 113(1):14-19. 10.1111/j.1600-0722.2004.00184.x, 15693824.
18. Duncan C, Dougall H, Johnston P, Green S, Brogan R, Leifert C, Smith L, Golden M, Benjamin N. Chemical Generation of Nitric-Oxide in the Mouth from the Enterosalivary Circulation of Dietary Nitrate. Nat Med 1995, 1(6):546-551. 10.1038/nm0695-546, 7585121.
19. Bayindir YZ, Polat MF, Seven N. Nitric oxide concentrations in saliva and dental plaque in relation to caries experience and oral hygiene. Caries Research 2005, 39(2):130-133. 10.1159/000083158, 15741725.
20. Carossa S, Pera P, Doglio P, Lombardo S, Colagrande P, Brussino L, Rolla G, Bucca C. Oral nitric oxide during plaque deposition. Eur J Clin Invest 2001, 31(10):876-879. 10.1046/j.1365-2362.2001.00902.x, 11737225.
21. Aurer A, Aleksic J, Ivic-Kardum M, Aurer J, Culo F. Nitric oxide synthesis is decreased in periodontitis. J Clin Periodontol 2001, 28(6):565-568. 10.1034/j.1600-051x.2001.028006565.x, 11350524.
22. Selwitz RH, Ismail AI, Pitts NB. Dental caries. Lancet 2007, 369(9555):51-59. 10.1016/S0140-6736(07)60031-2, 17208642.
23. Pihlstrom BL, Michalowicz BS, Johnson NW. Periodontal diseases. Lancet 2005, 366(9499):1809-1820. 10.1016/S0140-6736(05)67728-8, 16298220.
24. Kendall HK, Marshall RI, Bartold PM. Nitric oxide and tissue destruction. Oral Dis 2001, 7(1):2-10. 10.1034/j.1601-0825.2001.70102.x, 11354916.
25. Brennan PA, Thomas GJ, Langdon JD. The role of nitric oxide in oral diseases. Arch Oral Biol 2003, 48(2):93-100. 10.1016/S0003-9969(02)00183-8, 12642227.
26. Bogdan C. Nitric oxide and the immune response. Nat Immunol 2001, 2(10):907-916. 10.1038/ni1001-907, 11577346.
27. Ugar-Cankal D, Ozmeric N. A multifaceted molecule, nitric oxide in oral and periodontal diseases. Clin Chim Acta 2006, 366(1-2):90-100. 10.1016/j.cca.2005.10.018, 16387291.
28. Schreiber F, Polerecky L, de Beer D. Nitric oxide microsensor for high spatial resolution measurements in biofilms and sediments. Anal Chem 2008, 80(4):1152-1158. 10.1021/ac071563x, 18197634.
29. Cooper CE. Nitric oxide and cytochrome oxidase: substrate, inhibitor or effector?. Trends BiochemSci 2002, 27(1):33-39.
30. Stevanin TM, Ioannidis N, Mills CE, Kim SO, Hughes MN, Poole RK. Flavohemoglobin hmp affords inducible protection for Escherichia coli respiration, catalyzed by cytochromes bo ' or bd, from nitric oxide. J Biol Chem 2000, 275(46):35868-35875. 10.1074/jbc.M002471200, 10915782.
31. Parham NJ, Gibson GR. Microbes involved in dissimilatory nitrate reduction in the human large intestine. FEMS Microbiol Ecol 2000, 31(1):21-28. 10.1111/j.1574-6941.2000.tb00667.x, 10620715.
32. Mohan SB, Cole JA. The Dissimilatory Reduction of Nitrate to Ammonia by Anaerobic Bacteria. The Biology of the Nitrogen Cycle 2007, Amsterdam: Elsevier, Bothe H, Ferguson SJ, Newton WE, 1.
33. Lam P, Lavik G, Jensen MM, Vossenberg J, Schmid M, Woebken D, Dimitri G, Amann R, Jetten MSM, Kuypers MMM. Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc Natl Acad Sci USA 2009, 106(12):4752-4757. 10.1073/pnas.0812444106, 2649953,2649953, 19255441.
34. Hall-Stoodley L, Costerton JW, Stoodley P. Bacterial biofilms: From the natural environment to infectious diseases. Nat Rev Microbiol 2004, 2(2):95-108. 10.1038/nrmicro821, 15040259.
35. Visek WJ. Diet and Cell-Growth Modulation by Ammonia. Am J Clin Nutr 1978, 31(10):S216-S220.
36. Lloyd D. Aerobic Denitrification in Soils and Sediments - from Fallacies to Facts. Trends Ecol Evol 1993, 8(10):352-356.
37. Gao H, Schreiber F, Collins G, Jensen MM, Kostka JE, Lavik G, de Beer D, Zhou H, Kuypers MMM. Aerobic denitrification in permeable Wadden Sea sediments. ISME J 2009,
38. Robertson LA, Kuenen JG. Aerobic Denitrification - a Controversy Revived. Arch Microbiol 1984, 139(4):351-354.
39. Zumft WG. Nitric oxide reductases of prokaryotes with emphasis on the respiratory, heme-copper oxidase type. J Inorg Biochem 2005, 99(1):194-215. 10.1016/j.jinorgbio.2004.09.024, 15598502.
40. Barraud N, Hassett DJ, Hwang SH, Rice SA, Kjelleberg S, Webb JS. Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa. J Bacteriol 2006, 188(21):7344-7353. 10.1128/JB.00779-06, 1636254, 17050922.
41. Marsh PD. Are dental diseases examples of ecological catastrophes?. Microbiology-(UK) 2003, 149:279-294.
42. Bedioui F, Villeneuve N. Electrochemical nitric oxide sensors for biological samples - Principle, selected examples and applications. Electroanalysis 2003, 15(1):5-18.
43. Chen KJ, Pittman RN, Popel AS. Nitric oxide in the vasculature: Where does it come from and where does it go? A quantitative perspective. Antioxid Redox Signal 2008, 10(7):1185-1198. 10.1089/ars.2007.1959, 18331202.
44. Russow R, Neue HU, Wolf I, Plath C. Humans as a source of N2O - Evidences from breath air analysis and N-15 tracer experiments. 3rd International Symposium on Non-CO2 Greenhouse Gases: Jan 21-23 2002; Maastricht, Netherlands 2002, 155-156. Millpress Science Publishers.
45. Mitsui T, Kondo T. Effects of mouth cleansing on the levels of exhaled nitrous oxide in young and older adults. Sci Total Environ 1998, 224(1-3):177-180. 10.1016/S0048-9697(98)00353-2, 9926433.
46. Bleakley BH, Tiedje JM. Nitrous-Oxide Production by Organisms Other Than Nitrifiers or Denitrifiers. Appl Environ Microbiol 1982, 44(6):1342-1348. 242194, 16346152.
47. Crutzen PJ. Role of No and No2 in the Chemistry of the Troposphere and Stratosphere. Annu Rev Earth Planet Sci 1979, 7:443-472.
48. IPCC Climate Change 2001: The Scientific Basis. IPCC Third Assessment Report Climate Change 2001, IPCC.
49. Rolla G, Bruno M, Bommarito L, Heffler E, Ferrero N, Petrarulo M, Bagnis C, Bugiani M, Guida G. Breath analysis in patients with end-stage renal disease: effect of haemodialysis. Eur J Clin Invest 2008, 38(10):728-733. 10.1111/j.1365-2362.2008.02016.x, 18837798.
50. Matsumoto A, Hirata Y, Kakoki M, Nagata D, Momomura S, Sugimoto T, Tagawa H, Omata M. Increased excretion of nitric oxide in exhaled air of patients with chronic renal failure. Clin Sci 1999, 96(1):67-74. 10.1042/CS19980080, 9857108.
51. Zetterquist W, Marteus H, Kalm-Stephens P, Nas E, Nordvall L, Johannesson M, Alving K. Oral bacteria - The missing link to ambiguous findings of exhaled nitrogen oxides in cystic fibrosis. Respir Med 2009, 103(2):187-193. 10.1016/j.rmed.2008.09.009, 19006660.
52. Lee N, Nielsen PH, Andreasen KH, Juretschko S, Nielsen JL, Schleifer KH, Wagner M. Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl Environ Microbiol 1999, 65(3):1289-1297. 91176, 10049895.
53. Behrens S, Losekann T, Pett-Ridge J, Weber PK, Ng WO, Stevenson BS, Hutcheon ID, Relman DA, Spormann AM. Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Appl Environ Microbiol 2008, 74(10):3143-3150. 10.1128/AEM.00191-08, 2394947, 18359832.
54. Schramm A. In situ analysis of structure and activity of the nitrifying community in biofilms, aggregates, and sediments. Geomicrobiol J 2003, 20(4):313-333.
55. Kuypers MM, Jorgensen BB. The future of single-cell environmental microbiology. Environ Microbiol 2007, 9(1):6-7. 10.1111/j.1462-2920.2006.01222_5.x, 17227402.
56. Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The Human Microbiome Project. Nature 2007, 449(7164):804-810. 10.1038/nature06244, 17943116.
57. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ. Protein Measurement with the Folin Phenol Reagent. J Biol Chem 1951, 193(1):265-275.
58. Andersen K, Kjaer T, Revsbech NP. An oxygen insensitive microsensor for nitrous oxide. Sens Actuator B-Chem 2001, 81(1):42-48.
59. Revsbech NP. An Oxygen Microsensor with a Guard Cathode. Limnol Oceanogr 1989, 34(2):474-478.
60. deBeer D, Schramm A, Santegoeds CM, Kuhl M. A nitrite microsensor for profiling environmental biofilms. Appl Environ Microbiol 1997, 63(3):973-977. 1389125, 16535560.
61. Parrish KD, Greenberg EP. A Rapid Method for Extraction and Purification of DNA from Dental Plaque. Appl Environ Microbiol 1995, 61(11):4120-4123. 167721, 8526528.
62. Braman RS, Hendrix SA. Nanogram Nitrite and Nitrate Determination in Environmental and Biological-Materials by Vanadium(Iii) Reduction with Chemi-Luminescence Detection. Anal Chem 1989, 61(24):2715-2718. 10.1021/ac00199a007, 2619057.