-
1
-
-
0032555696
-
Prediction of local structure in proteins using a library of sequence-structure motifs
-
Bystroff C, Baker D (1998) Prediction of local structure in proteins using a library of sequence-structure motifs. J Mol Biol 281: 565-577.
-
(1998)
J Mol Biol
, vol.281
, pp. 565-577
-
-
Bystroff, C.1
Baker, D.2
-
2
-
-
1442310610
-
Loops In Proteins (LIP)-a comprehensive loop database for homology modelling
-
Michalsky E, Goede A, Preissner R (2003) Loops In Proteins (LIP)-a comprehensive loop database for homology modelling. Protein Eng 16: 979-985.
-
(2003)
Protein Eng
, vol.16
, pp. 979-985
-
-
Michalsky, E.1
Goede, A.2
Preissner, R.3
-
3
-
-
0033829056
-
Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure
-
Burke DF, Deane CM, Blundell TL (2000) Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure. Bioinformatics 16: 513-519.
-
(2000)
Bioinformatics
, vol.16
, pp. 513-519
-
-
Burke, D.F.1
Deane, C.M.2
Blundell, T.L.3
-
4
-
-
0347899425
-
ArchDB: Automated protein loop classification as a tool for structural genomics
-
Espadaler J, Fernandez-Fuentes N, Hermoso A, Querol E, Aviles FX, et al. (2004) ArchDB: automated protein loop classification as a tool for structural genomics. Nucleic Acids Res 32: D185-D188.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Espadaler, J.1
Fernandez-Fuentes, N.2
Hermoso, A.3
Querol, E.4
Aviles, F.X.5
-
5
-
-
1842635567
-
Clustering of protein structural fragments reveals modular building block approach of nature
-
Tendulkar AV, Joshi AA, Sohoni MA, Wangikar PP (2004) Clustering of protein structural fragments reveals modular building block approach of nature. J Mol Biol 338: 611-629.
-
(2004)
J Mol Biol
, vol.338
, pp. 611-629
-
-
Tendulkar, A.V.1
Joshi, A.A.2
Sohoni, M.A.3
Wangikar, P.P.4
-
6
-
-
45549109966
-
Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments
-
Manikandan K, Pal D, Ramakumar S, Brener NE, Iyengar SS, et al. (2008) Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments. Genome Biol 9: R52-R52.
-
(2008)
Genome Biol
, vol.9
, pp. 52
-
-
Manikandan, K.1
Pal, D.2
Ramakumar, S.3
Brener, N.E.4
Iyengar, S.S.5
-
7
-
-
43349087464
-
FunClust: A web server for the identification of structural motifs in a set of nonhomologous protein structures
-
Ausiello G, Gherardini PF, Marcatili P, Tramontano A, Via A, et al. (2008) FunClust: a web server for the identification of structural motifs in a set of nonhomologous protein structures. BMC Bioinformatics 9 Suppl 2: S2-S2.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 2
-
-
Ausiello, G.1
Gherardini, P.F.2
Marcatili, P.3
Tramontano, A.4
Via, A.5
-
8
-
-
67649891099
-
Structural motifs recurring in different folds recognize the same ligand fragments
-
Ausiello G, Gherardini PF, Gatti E, Incani O, Helmer-Citterich M (2009) Structural motifs recurring in different folds recognize the same ligand fragments. BMC Bioinformatics 10: 182-182.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 182
-
-
Ausiello, G.1
Gherardini, P.F.2
Gatti, E.3
Incani, O.4
Helmer-Citterich, M.5
-
9
-
-
38549107891
-
The 20 years of PROSITE
-
Hulo N, Bairoch A, Bulliard V, Cerutti L, Cuche BA, et al. (2008) The 20 years of PROSITE. Nucleic Acids Res 36: D245-D249.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Hulo, N.1
Bairoch, A.2
Bulliard, V.3
Cerutti, L.4
Cuche, B.A.5
-
10
-
-
0037248869
-
PRINTS and its automatic supplement, prePRINTS
-
Attwood TK, Bradley P, Flower DR, Gaulton A, Maudling N, et al. (2003) PRINTS and its automatic supplement, prePRINTS. Nucleic Acids Res 31: 400-402.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 400-402
-
-
Attwood, T.K.1
Bradley, P.2
Flower, D.R.3
Gaulton, A.4
Maudling, N.5
-
12
-
-
0033548460
-
Three-dimensional structure analysis of PROSITE patterns
-
Kasuya A, Thornton JM (1999) Three-dimensional structure analysis of PROSITE patterns. J Mol Biol 286: 1673-1691.
-
(1999)
J Mol Biol
, vol.286
, pp. 1673-1691
-
-
Kasuya, A.1
Thornton, J.M.2
-
13
-
-
0348129526
-
The ASTRAL Compendium in 2004
-
Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, et al. (2004) The ASTRAL Compendium in 2004. Nucleic Acids Res 32: D189-D192.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Chandonia, J.M.1
Hon, G.2
Walker, N.S.3
Lo Conte, L.4
Koehl, P.5
-
14
-
-
0028177676
-
Analysis of C alpha geometry in protein structures
-
Oldfield TJ, Hubbard RE (1994) Analysis of C alpha geometry in protein structures. Proteins 18: 324-337.
-
(1994)
Proteins
, vol.18
, pp. 324-337
-
-
Oldfield, T.J.1
Hubbard, R.E.2
-
15
-
-
24644463224
-
A geometric invariant-based framework for the analysis of protein conformational space
-
Tendulkar AV, Sohoni MA, Ogunnaike B, Wangikar PP (2005) A geometric invariant-based framework for the analysis of protein conformational space. Bioinformatics 21: 3622-3628.
-
(2005)
Bioinformatics
, vol.21
, pp. 3622-3628
-
-
Tendulkar, A.V.1
Sohoni, M.A.2
Ogunnaike, B.3
Wangikar, P.P.4
-
16
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJP, et al. (2008) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res 36: D419-D425.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.M.3
Brenner, S.E.4
Hubbard, T.J.P.5
-
17
-
-
33846088140
-
FireDB-a database of functionally important residues from proteins of known structure
-
Lopez G, Valencia A, Tress M (2007) FireDB-a database of functionally important residues from proteins of known structure. Nucleic Acids Res 35: D219-D223.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Lopez, G.1
Valencia, A.2
Tress, M.3
-
18
-
-
13444288174
-
EMSD: An integrated data resource for bioinformatics
-
Velankar S, McNeil P, Mittard-Runte V, Suarez A, Barrell D, et al. (2005) EMSD: an integrated data resource for bioinformatics. Nucleic Acids Res 33: D262-D265.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Velankar, S.1
McNeil, P.2
Mittard-Runte, V.3
Suarez, A.4
Barrell, D.5
-
19
-
-
0025908897
-
The ras protein family: Evolutionary tree and role of conserved amino acids
-
Valencia A, Chardin P, Wittinghofer A, Sander C (1991) The ras protein family: Evolutionary tree and role of conserved amino acids. Biochemistry 30: 4637-4648.
-
(1991)
Biochemistry
, vol.30
, pp. 4637-4648
-
-
Valencia, A.1
Chardin, P.2
Wittinghofer, A.3
Sander, C.4
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