Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure

Bioinformatics

Volumn 16, Issue 6, 2000, Pages 513-519

  Burke, D F ^a   Deane, C M ^a   Blundell, T L ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; INTERNET; METHODOLOGY; PREDICTION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

EID: 0033829056     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/16.6.513     Document Type: Article

References (34)

1. Knowledge-based protein modelling and design
2. Prediction of the folding of short polypeptide segments by uniform conformational sampling
3. Conformational sampling using high temperature molecular dynamics
4. Structure of antibody hypervariable loops reproduced by a conformational search algorithm
5. Modelling the polypeptide backbone with 'spare parts' from known protein structures
6. Conformational analysis and clustering of short and medium size loops connecting regular secondary structures. A database for modelling and prediction
7. Structure of alpha-alpha hairpins with short connections
8. Confidence limits on phylogenies: An approach using the bootstrap
9. Using known substructures in protein model building and crystallography
10. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
11. A global taxonomy of loops in globular proteins
12. Loops in globular proteins: A novel category of secondary structure
13. Protein loops on structurally similar scaffolds: Database and conformational analysis
14. Modeling antibody hypervariable loops: A combined algorithm
15. Long loops in proteins
16. Structural families in loops of homologous proteins: Automatic classification, modelling and application to antibodies
17. Assessment of comparative modelling in CASP2
18. Backbone entropy of loops as a measure of their flexibility: Application to a ras protein simulated by molecular dynamics
19. Four classes of beta-hairpins in proteins
20. JOY: Protein sequence structure representation and analysis
21. HOMSTRAD: A database of protein structure alignments for homologous families
22. An automated classification of the structure of protein loops
23. Taxonomy and conformational analysis of loops in proteins
24. Predicting the conformational class of short and medium size loops connecting regular secondary structures: Application to comparative modelling
25. RASMOL biomolecular graphics for all
26. Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures
27. Beta-hairpin families in globular proteins
28. Conformation of beta-hairpins in protein structures A systematic classification with applications to modelling by homology, electron density fitting and protein engineering
29. CAMPASS: A database of structurally aligned protein superfamilies
30. Modelling protein loops using a φ(i)+1,Ψ(i) dimer database
31. Fragment ranking in modelling of protein structure. Conformationally constrained environmental amino acid substitution tables
32. Automatic classification and analysis of alpha-alpha turn motifs in proteins
33. PDB-based protein loop prediction: Parameters for selection and methods for optimization
34. New efficient statistical sequence dependent structure prediction of short to medium sized protein loops based on an exhaustive loop classification