-
1
-
-
33845403686
-
Nanosecond folding dynamics of a three-stranded β-sheet
-
DOI 10.1021/ja064865+
-
Y. Xu, P. Purkayastha, and F. Gai, J. Am. Chem. Soc. 128, 15836 (2006). 10.1021/ja064865+ (Pubitemid 44894125)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.49
, pp. 15836-15842
-
-
Xu, Y.1
Purkayastha, P.2
Gai, F.3
-
4
-
-
34347375915
-
The protein folding problem: when will it be solved?
-
DOI 10.1016/j.sbi.2007.06.001, PII S0959440X07000772, Nucleic acids / Sequences and topology
-
K. A. Dill, S. B. Ozkan, T. R. Weikl, J. D. Chodera, and V. A. Voelz, Curr. Opin. Struct. Biol. 17, 342 (2007). 10.1016/j.sbi.2007.06.001 (Pubitemid 47021366)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.3
, pp. 342-346
-
-
Dill, K.A.1
Ozkan, S.B.2
Weikl, T.R.3
Chodera, J.D.4
Voelz, V.A.5
-
5
-
-
0025345415
-
-
10.1146/annurev.biochem.59.1.631
-
P. Kim and R. Baldwin, Ann. Rev. Biochem. 59, 631 (1990). 10.1146/annurev.biochem.59.1.631
-
(1990)
Ann. Rev. Biochem.
, vol.59
, pp. 631
-
-
Kim, P.1
Baldwin, R.2
-
9
-
-
0024358426
-
-
A. Matouschek, S. Killis, L. Serrano, and A. Fersht, Nature (London) 340, 122 (1989).
-
(1989)
Nature (London)
, vol.340
, pp. 122
-
-
Matouschek, A.1
Killis, S.2
Serrano, L.3
Fersht, A.4
-
10
-
-
34948869804
-
The ultimate speed limit to protein folding is conformational searching
-
DOI 10.1021/ja066785b
-
K. Ghosh, S. Ozkan, and K. Dill, J. Am. Chem. Soc. 129, 11920 (2007). 10.1021/ja066785b (Pubitemid 47515346)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.39
, pp. 11920-11927
-
-
Ghosh, K.1
Ozkan, S.B.2
Dill, K.A.3
-
11
-
-
0346734133
-
-
10.1021/ja066785b
-
Y. Zhu, D. Alonso, K. Maki, C.-Y. Huang, S. Lahr, V. Daggett, H. Roder, W. Delgado, and F. Gai, Proc. Natl. Acad. Sci. U.S.A. 100, 15486 (2003). 10.1021/ja066785b
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 15486
-
-
Zhu, Y.1
Alonso, D.2
Maki, K.3
Huang, C.-Y.4
Lahr, S.5
Daggett, V.6
Roder, H.7
Delgado, W.8
Gai, F.9
-
12
-
-
0003166498
-
-
(. 10.1002/(SICI)1097-0134(19980101)30:12::AID-PROT23.0.CO;2-R
-
H. Chan and K. Dill, Proteins: Struct., Funct., Genet. 30, 2 (1998. 10.1002/(SICI)1097-0134(19980101)30:12::AID-PROT23.0.CO;2-R
-
(1998)
Proteins: Struct., Funct., Genet.
, vol.30
, pp. 2
-
-
Chan, H.1
Dill, K.2
-
13
-
-
4444324627
-
-
A. Akmal and V. Muoz, Proteins: Struct., Funct., Genet. 57, 142 (2004).
-
(2004)
Proteins: Struct., Funct., Genet.
, vol.57
, pp. 142
-
-
Akmal, A.1
Muoz, V.2
-
15
-
-
0028947257
-
-
10.1002/prot.340210302
-
J. D. Bryngelson, J. N. Onuchic, N. D. Socci, and P. G. Wolynes, Proteins: Struct., Funct., Genet. 21, 167 (1995). 10.1002/prot.340210302
-
(1995)
Proteins: Struct., Funct., Genet.
, vol.21
, pp. 167
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
16
-
-
0030322669
-
-
J. N. Onuchic, N. D. Socci, Z. Luthey-Schulten, and P. G. Wolynes, Folding Des. 1, 441 (1996).
-
(1996)
Folding Des.
, vol.1
, pp. 441
-
-
Onuchic, J.N.1
Socci, N.D.2
Luthey-Schulten, Z.3
Wolynes, P.G.4
-
18
-
-
33645083021
-
-
10.1002/(SICI)1097-0134(19980801)32:2136::AID-PROT23.3.CO;2-5
-
N. D. Socci, J. N. Onuchic, and P. G. Wolynes, Proteins: Struct., Funct., Genet. 32, 1136 (1998). 10.1002/(SICI)1097-0134(19980801)32:2136::AID-PROT23.3. CO;2-5
-
(1998)
Proteins: Struct., Funct., Genet.
, vol.32
, pp. 1136
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
23
-
-
0001467795
-
-
10.1063/1.467769
-
A. Dinner, A. ali, M. Karplus, and E. Shakhnovich, J. Chem. Phys. 101, 1444 (1994). 10.1063/1.467769
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 1444
-
-
Dinner, A.1
Ali, A.2
Karplus, M.3
Shakhnovich, E.4
-
24
-
-
0034747451
-
-
10.1046/j.1570-7458.2001.00895.x
-
O. Collet, Europhys. Lett. 53, 93 (2001). 10.1046/j.1570-7458.2001.00895. x
-
(2001)
Europhys. Lett.
, vol.53
, pp. 93
-
-
Collet, O.1
-
27
-
-
0003166498
-
-
10.1002/(SICI)1097-0134(19980101)30:12::AID-PROT23.0.CO;2-R
-
H. S. Chan and K. A. Dill, Proteins: Struct., Funct., Genet., 30, 2 (1998). 10.1002/(SICI)1097-0134(19980101)30:12::AID-PROT23.0.CO;2-R
-
(1998)
Proteins: Struct., Funct., Genet.
, vol.30
, pp. 2
-
-
Chan, H.S.1
Dill, K.A.2
-
28
-
-
4243861085
-
-
10.1103/PhysRevB.24.2613
-
B. Derrida, Phys. Rev. B 24, 2613 (1981). 10.1103/PhysRevB.24.2613
-
(1981)
Phys. Rev. B
, vol.24
, pp. 2613
-
-
Derrida, B.1
-
29
-
-
0025146274
-
Implications of thermodynamics of protein folding for evolution of primary sequences
-
DOI 10.1038/346773a0
-
E. I. Shakhnovich and A. M. Gutin, Nature (London) 346, 773 (1990). 10.1038/346773a0 (Pubitemid 20251095)
-
(1990)
Nature
, vol.346
, Issue.6286
, pp. 773-775
-
-
Shakhnovich, E.I.1
Gutin, A.M.2
-
31
-
-
0028174310
-
-
(London), 10.1038/369248a0
-
A. ali, E. Shakhnovich, and M. Karplus, Nature (London) 369, 248 (1994). 10.1038/369248a0
-
(1994)
Nature
, vol.369
, pp. 248
-
-
Ali, A.1
Shakhnovich, E.2
Karplus, M.3
-
35
-
-
0028243107
-
Cold denaturation of the molten globule states of apomyoglobin and a profile for protein folding
-
DOI 10.1021/bi00182a019
-
I. Nishi, N. Kataoka, F. Tokunaga, and Y. Goto, Biochemistry 33, 4903 (1994). 10.1021/bi00182a019 (Pubitemid 24158440)
-
(1994)
Biochemistry
, vol.33
, Issue.16
, pp. 4903-4909
-
-
Nishii, I.1
Kataoka, M.2
Tokunaga, F.3
Goto, Y.4
-
36
-
-
33750828962
-
The Alkali Molten Globule State of Horse Ferricytochrome c: Observation of Cold Denaturation
-
DOI 10.1016/j.jmb.2006.09.025, PII S0022283606012162
-
R. Kumar, A. Prabhu, D. Rao, and A. Bhuyan, J. Mol. Biol. 364, 483 (2006). 10.1016/j.jmb.2006.09.025 (Pubitemid 44715939)
-
(2006)
Journal of Molecular Biology
, vol.364
, Issue.3
, pp. 483-495
-
-
Kumar, R.1
Prabhu, N.P.2
Rao, D.K.3
Bhuyan, A.K.4
-
37
-
-
0008863560
-
-
10.1016/S0065-3233(08)60608-7
-
W. Kauzmann, Adv. Protein Chem. 14, 1 (1959). 10.1016/S0065-3233(08) 60608-7
-
(1959)
Adv. Protein Chem.
, vol.14
, pp. 1
-
-
Kauzmann, W.1
-
39
-
-
0025370815
-
Dominant forces in protein folding
-
DOI 10.1021/bi00483a001
-
K. Dill, Biochemistry 29, 7133 (1990). 10.1021/bi00483a001 (Pubitemid 20230041)
-
(1990)
Biochemistry
, vol.29
, Issue.31
, pp. 7133-7155
-
-
Dill, K.A.1
-
40
-
-
0034516064
-
Putting proteins back into water
-
DOI 10.1103/PhysRevE.62.8449
-
P. De Los Rios and G. Caldarelli, Phys. Rev. E 62, 8449 (2000). 10.1103/PhysRevE.62.8449 (Pubitemid 32087907)
-
(2000)
Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics
, vol.62
, Issue.6
, pp. 8449-8452
-
-
De Los Rios, P.1
Caldarelli, G.2
-
42
-
-
27344456441
-
Four-states phase diagram of proteins
-
DOI 10.1209/epl/i2005-10225-9
-
O. Collet, Europhys. Lett. 72, 301 (2005). 10.1209/epl/i2005-10225-9 (Pubitemid 41525290)
-
(2005)
Europhysics Letters
, vol.72
, Issue.2
, pp. 301-307
-
-
Collet, O.1
-
44
-
-
0001571064
-
-
10.1103/PhysRevLett.77.4966
-
S. Garde, G. Hummer, A. E. Garcia, M. E. Paulaitis, and L. R. Pratt, Phys. Rev. Lett. 77, 4966 (1996). 10.1103/PhysRevLett.77.4966
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 4966
-
-
Garde, S.1
Hummer, G.2
Garcia, A.E.3
Paulaitis, M.E.4
Pratt, L.R.5
-
45
-
-
11744348751
-
-
10.1021/jp982873+
-
G. Hummer, S. Garde, A. E. Garcia, M. E. Paulaitis, and L. R. Pratt, J. Phys. Chem. B 102, 10469 (1998). 10.1021/jp982873+
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 10469
-
-
Hummer, G.1
Garde, S.2
Garcia, A.E.3
Paulaitis, M.E.4
Pratt, L.R.5
-
46
-
-
0032967260
-
Temperature dependence of the solubility of non-polar gases in water
-
DOI 10.1016/S0301-4622(99)00018-6, PII S0301462299000186
-
S. Garde, A. E. Garcia, L. R. Pratt, and H. Hummer, Biophys. Chem. 78, 21 (1999). 10.1016/S0301-4622(99)00018-6 (Pubitemid 29206655)
-
(1999)
Biophysical Chemistry
, vol.78
, Issue.1-2
, pp. 21-32
-
-
Garde, S.1
Garcia, A.E.2
Pratt, L.R.3
Hummer, G.4
-
47
-
-
0000238927
-
-
10.1021/jp990337r
-
M. A. Gomez, L. R. Pratt, G. Hummer, and S. Garde, J. Phys. Chem. B 103, 3520 (1999). 10.1021/jp990337r
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 3520
-
-
Gomez, M.A.1
Pratt, L.R.2
Hummer, G.3
Garde, S.4
-
51
-
-
0037459035
-
Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: How adequate is native-centric topological modeling?
-
DOI 10.1016/S0022-2836(02)01434-1
-
H. Kaya and H. Chan, J. Mol. Biol. 326, 911 (2003). 10.1016/S0022- 2836(02)01434-1 (Pubitemid 36279329)
-
(2003)
Journal of Molecular Biology
, vol.326
, Issue.3
, pp. 911-931
-
-
Kaya, H.1
Chan, H.S.2
-
52
-
-
19444381093
-
Chevron behavior and isostable enthalpic barriers in protein folding: Successes and limitations of simple Go-like modeling
-
DOI 10.1529/biophysj.104.057471
-
H. Kaya, Z. Liu, and H. Chan, Biophys. J. 89, 520 (2005). 10.1529/biophysj.104.057471 (Pubitemid 41098305)
-
(2005)
Biophysical Journal
, vol.89
, Issue.1
, pp. 520-535
-
-
Kaya, H.1
Liu, Z.2
Chan, H.S.3
-
54
-
-
5144223810
-
Bulk-solvent and hydration-shell fluctuations, similar to α- and β-fluctuations in glasses, control protein motions and functions
-
DOI 10.1073/pnas.0405573101
-
P. Fenimore, H. Frauenfelder, B. McMahon, and R. Young, Proc. Natl. Acad. Sci. U.S.A. 101, 14408 (2004). 10.1073/pnas.0405573101 (Pubitemid 39346762)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.40
, pp. 14408-14413
-
-
Fenimore, P.W.1
Frauenfelder, H.2
McMahon, B.H.3
Young, R.D.4
-
55
-
-
33750371053
-
Protein folding is slaved to solvent motions
-
DOI 10.1073/pnas.0607168103
-
H. Frauenfelder, P. Fenimore, G. Chen, and B. McMahon, Proc. Natl. Acad. Sci. U.S.A. 103, 15469 (2006). 10.1073/pnas.0607168103 (Pubitemid 44625615)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.42
, pp. 15469-15472
-
-
Frauenfelder, H.1
Fenimore, P.W.2
Chen, G.3
McMahon, B.H.4
-
56
-
-
18144365842
-
Mosaic energy landscapes of liquids and the control of protein conformational dynamics by glass-forming solvents
-
DOI 10.1021/jp045205z
-
V. Lubchenko, P. Wolynes, and H. Frauenfelder, J. Phys. Chem. 109, 7488 (2005). 10.1021/jp045205z (Pubitemid 40609884)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.15
, pp. 7488-7499
-
-
Lubchenko, V.1
Wolynes, P.G.2
Frauenfelder, H.3
-
58
-
-
65249122552
-
-
10.1073/pnas.0900336106
-
H. Frauenfelder, G. Chen, J. Berendzen, P. W. Fenimore, H. Jansson, B. H. MacMahon, I. R. Stroe, J. Swenson, and R. D. Young, Proc. Natl. Acad. Sci. U.S.A. 106, 5129 (2009). 10.1073/pnas.0900336106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 5129
-
-
Frauenfelder, H.1
Chen, G.2
Berendzen, J.3
Fenimore, P.W.4
Jansson, H.5
MacMahon, B.H.6
Stroe, I.R.7
Swenson, J.8
Young, R.D.9
-
61
-
-
0001843048
-
-
10.1021/ar00169a005
-
N. Muller, Acc. Chem. Res. 23, 23 (1990). 10.1021/ar00169a005
-
(1990)
Acc. Chem. Res.
, vol.23
, pp. 23
-
-
Muller, N.1
-
62
-
-
0029939483
-
A two-state model of hydrophobic hydration that produces compensating enthalpy and entropy changes
-
DOI 10.1021/ja9538389
-
B. Lee and G. Graziano, J. Am. Chem. Soc. 118, 5163 (1996). 10.1021/ja9538389 (Pubitemid 26201539)
-
(1996)
Journal of the American Chemical Society
, vol.118
, Issue.22
, pp. 5163-5168
-
-
Lee, B.1
Graziano, G.2
-
66
-
-
0032790341
-
-
10.1002/(SICI)1097-0134(19990901)36:4383::AID-PROT23.0.CO;2-P
-
C. Chipot, B. Maigret, and A. Pohorille, Proteins: Struct., Funct., Genet. 36, 383 (1999). 10.1002/(SICI)1097-0134(19990901)36:4383::AID-PROT23.0. CO;2-P
-
(1999)
Proteins: Struct., Funct., Genet.
, vol.36
, pp. 383
-
-
Chipot, C.1
Maigret, B.2
Pohorille, A.3
-
67
-
-
0015222647
-
-
10.1016/0022-2836(71)90324-X
-
B. Lee and F. M. Richards, J. Mol. Biol. 55, 379 (1971). 10.1016/0022-2836(71)90324-X
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379
-
-
Lee, B.1
Richards, F.M.2
-
70
-
-
0023338543
-
-
10.1073/pnas.84.10.3086
-
T. Ooi, M. Ootabake, G. Nemethy, and H. Scheraga, Proc. Natl. Acad. Sci. U.S.A. 84, 3086 (1993). 10.1073/pnas.84.10.3086
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 3086
-
-
Ooi, T.1
Ootabake, M.2
Nemethy, G.3
Scheraga, H.4
-
73
-
-
54849432970
-
-
10.1063/1.2992556
-
O. Collet, J. Chem. Phys. 129, 155101 (2008). 10.1063/1.2992556
-
(2008)
J. Chem. Phys.
, vol.129
, pp. 155101
-
-
Collet, O.1
-
74
-
-
0031238533
-
-
10.1002/(SICI)1097-0282(199709)42:3363::AID-BIP83.0.CO;2-K
-
O. Collet, S. Premilat, B. Maigret, and H. A. Scheraga, Biopolymers 42, 363 (1997). 10.1002/(SICI)1097-0282(199709)42:3363::AID-BIP83.0.CO;2-K
-
(1997)
Biopolymers
, vol.42
, pp. 363
-
-
Collet, O.1
Premilat, S.2
Maigret, B.3
Scheraga, H.A.4
-
75
-
-
27744500841
-
Solvation and desolvation effects in protein folding: Native flexibility, kinetic cooperativity and enthalpic barriers under isostability conditions
-
DOI 10.1088/1478-3975/2/4/S01, PII S1478397505042937
-
Z. Liu and H. Chan, Phys. Biol. 2, S75 (2005). 10.1088/1478-3975/2/4/S01 (Pubitemid 41609433)
-
(2005)
Physical Biology
, vol.2
, Issue.4
-
-
Liu, Z.1
Chan, H.S.2
-
76
-
-
0037079583
-
Folding funnels: The key to robust protein structure prediction
-
DOI 10.1002/jcc.1162
-
C. Hardin, M. P. Eastwood, M. Prentiss, Z. Luthey-Schulten, and P. G. Wolynes, J. Comp. Chem. 23, 138 (2002 a). 10.1002/jcc.1162 (Pubitemid 34063138)
-
(2002)
Journal of Computational Chemistry
, vol.23
, Issue.1
, pp. 138-146
-
-
Hardin, C.1
Eastwood, M.P.2
Prentiss, M.3
Luthey-Schulten, Z.4
Wolynes, P.G.5
-
77
-
-
0036535974
-
Ab initio protein structure prediction
-
DOI 10.1016/S0959-440X(02)00306-8
-
C. Hardin, T. V. Pogorelov, and Z. Luthey-Schulten, Curr. Opin. Struct. Biol. 12, 176 (2002 b). 10.1016/S0959-440X(02)00306-8 (Pubitemid 34327476)
-
(2002)
Current Opinion in Structural Biology
, vol.12
, Issue.2
, pp. 176-181
-
-
Hardin, C.1
Pogorelov, T.V.2
Luthey-Schulten, Z.3
-
78
-
-
0034581192
-
Problems and prospects in microcalorimetry of biological macromolecules
-
DOI 10.1016/S0076-6879(00)23360-0
-
G. Privalov and P. Privalov, Methods Enzymol. 323, 31 (2000). 10.1016/S0076-6879(00)23360-0 (Pubitemid 34193272)
-
(2000)
Methods in Enzymology
, vol.323
, pp. 31-62
-
-
Privalov, G.P.1
Privalov, P.L.2
-
79
-
-
33745698759
-
-
10.1110/ps.062180806
-
P. Faisca and K. Plaxco, Protein Sci. 15, 1608 (2006). 10.1110/ps.062180806
-
(2006)
Protein Sci.
, vol.15
, pp. 1608
-
-
Faisca, P.1
Plaxco, K.2
-
81
-
-
0000239504
-
-
10.1103/PhysRevLett.80.3654
-
M. Cieplak, M. Henkel, J. Karbowski, and J. Banavar, Phys. Rev. Lett. 80, 3654 (1998). 10.1103/PhysRevLett.80.3654
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 3654
-
-
Cieplak, M.1
Henkel, M.2
Karbowski, J.3
Banavar, J.4
-
82
-
-
85037193624
-
-
10.1103/PhysRevE.67.061912
-
O. Collet, Phys. Rev. E 67, 061912 (2003). 10.1103/PhysRevE.67.061912
-
(2003)
Phys. Rev. e
, vol.67
, pp. 061912
-
-
Collet, O.1
|