Molecular and structural modeling of the Phanerochaete flavido-alba extracellular laccase reveals its ferroxidase structure

Archives of Microbiology

Volumn 192, Issue 11, 2010, Pages 883-892

  Rodríguez Rincón, Franciscoxs ^a   Suarez, Antonio ^b   Lucas, Mathias ^b   Larrondo, Luis Fernando ^c   De La Rubia, Teresa ^b   Polaina, Julio ^d   Martínez, José ^b  

^a UNIVERSIDAD DE ANTIOQUIA   (Colombia)

^b UNIVERSITY OF GRANADA   (Spain)

^c PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^d INSTITUTO DE AGROQUÍMICA Y TECNOLOGÍA DE ALIMENTOS CSIC   (Spain)

Author keywords

Laccase; Multicopper oxidase; Olive oil wastewater; Phanerochaete flavido alba

Indexed keywords

CERULOPLASMIN; COMPLEMENTARY DNA; LACCASE; COPPER OXIDASE; FLAVONOID; FUNGAL PROTEIN; OXIDOREDUCTASE; PHENOL DERIVATIVE; POLYPHENOLS;

AMINO ACID SEQUENCE; ARTICLE; BIOREMEDIATION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME METABOLISM; ENZYME PURIFICATION; ENZYME STRUCTURE; FUNGAL GENE; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PFAL GENE; PHANEROCHAETE; PHANEROCHAETE FLAVIDO ALBA; PHYLOGENY; PRIORITY JOURNAL; UNINDEXED SEQUENCE; CHEMICAL STRUCTURE; ENZYME SPECIFICITY; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; SEQUENCE ALIGNMENT;

FUNGI; PHANEROCHAETE; PHANEROCHAETE CHRYSOSPORIUM; PHANEROCHAETE FLAVIDOALBA;

AMINO ACID SEQUENCE; BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; CERULOPLASMIN; CLONING, MOLECULAR; FLAVONOIDS; FUNGAL PROTEINS; LACCASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHANEROCHAETE; PHENOLS; PHYLOGENY; SEQUENCE ALIGNMENT; SUBSTRATE SPECIFICITY;

EID: 79952051826     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-010-0616-2     Document Type: Article

References (34)

1. Alcalde M (2007) Laccases: biological functions, molecular structure and industrial applications. In: Polaina J, MacCabe AP (eds) Industrial enzymes: structure, functions and applications. Dordretch. Springer, The Netherlands, pp 461-476
2. Baldrian P (2006) Fungal laccases-occurrence and properties. FEMS Microbiol Rev 30:215-242
3. Bonaccorsi di Patti MC, Felice MR, Camuti AP, Lania A, Musci G (2000) The essential role of Glu-185 and Tyr-354 residues in the ferroxidase activity of Saccharomyces cerevisiae. Fet3 FEBS Lett 472:283-286 (Pubitemid 30224480)
4. de la Rubia T, Ruiz E, Pérez J, Martínez J (2002) Properties of a laccase produced by Phanerochaete flavido-alba induced by vanillin. Arch Microbiol 179:70-73
5. de la Rubia T, Lucas M, Martínez J (2008) Controversial role of fungal laccases in decreasing the antibacterial effect of olive mill waste-waters. Bioresour Technol 99:1018-1025 (Pubitemid 350251727)
6. Fiorentino A, Gentili A, Isidori M, Monaco P, Lardelli A, Parcella A, Temessi F (2003) Environmental effects caused by olive mill wastewaters: toxicity comparison of low-molecular-weight phenol components. J Agric Food Chem 51:1005-1009
7. García-Mena J, Cano-Ramirez C, Garibay-Orijel C, Ramirez-Canseco S, Poggi-Varaldo HM (2005) A PCR method for the detection and differentiation of Lentinus edodes and Trametes versicolor in defined-mixed cultures used for wastewater treatment. Appl Microbiol Biotechnol 67:524-531 (Pubitemid 40909598)
8. Hoegger PJ, Kilaru S, James TY, Thacker JR, Kues U (2006) Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences. FEBS J 273:2308-2326
9. Jones DT (1999) GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. J Mol Biol 287:797-815 (Pubitemid 29176514)
10. Kersten P, Cullen D (2007) Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium. Fungal Genet Biol 44:77-87 (Pubitemid 46038784)
11. Kilaru S, Hoegger PJ, Kues U (2006) The laccase multi-gene family in Coprinopsis cinerea has seventeen different members that divide into two distinct subfamilies. Curr Genet 50:45-60 (Pubitemid 43898992)
12. Kotsou M, Mari I, Lasaridi K, Chatzipavlidis I, Balis C, Kyriacou A (2004) The effect of olive oil mill wastewater (OMW) on soil microbial communities and suppressiveness against Rhizoctonia solani. Appl Soil Ecol 26:113-121 (Pubitemid 38583656)
13. Kumar SV, Phale PS, Durani S, Wangikar PP (2003) Combined sequence and structure analysis of the fungal laccase family. Biotechnol Bioeng 83:386-394 (Pubitemid 36885658)
14. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685
15. Larrondo LF, Salas L, Melo F, Vicuña R, Cullen D (2003) A novel extracellular multicopper oxidase from Phanerochaete chrysosporium with ferroxidase activity. Appl Environ Microbiol 69:6257-6263 (Pubitemid 37280352)
16. Larrondo LF, Gonzalez B, Cullen D, Vicuña R (2004) Characterization of a multicopper oxidase gene cluster in Phanerochaete chrysosporium and evidence of altered splicing of the mco transcripts. Microbiology 150:2775-2783 (Pubitemid 39173280)
17. Larrondo LF, Canessa P, Melo F, Polanco R, Vicuña R (2007) Cloning and characterization of the genes encoding the high-affinity iron-uptake protein complex Fet3/Ftr1 in the basidiomycete Phanerochaete chrysosporium. Microbiology 153:1772-1780 (Pubitemid 46952507)
18. Linares A, Caba JM, Ligero F, de la Rubia T, Martínez J (2003) Detoxification of semisolid olive-mill wastes and pine-chip mixtures using Phanerochaete flavido-alba. Chemosphere 51:887-891 (Pubitemid 36514304)
19. Liu L, Tewari RP, Williamson PR (1999) Laccase protects Cryptococcus neoformans from antifungal activity of alveolar macrophages. Infect Immun 67:6034-6039 (Pubitemid 29508134)
20. López MJ, Elorrieta MA, Vargas-García MC, Suárez-Estrella F, Moreno J (2002) The effect of aeration on the biotransformation of lignocellulosic wastes by white-rot fungi. Bioresour Technol 81:123-129 (Pubitemid 32939319)
21. Madzak C, Otterbein L, Chamkha M, Moukha S, Asther M, Gaillardin C, Beckerich JM (2005) Heterologous production of a laccase from the basidiomycete Pycnoporus cinnabarinus in the dimorphic yeast Yarrowia lipolytica. FEMS Yeast Res 5:635-646 (Pubitemid 40380703)
22. Mekki A, Dhouib A, Sayadi S (2007) Polyphenols dynamics and phytotoxicity in a soil amended by olive mill wastewaters. J Environ Manag 84:134-140 (Pubitemid 46628425)
23. Messerschmidt AR, Ladenstein RH, Bolognesi M, Avigliano L, Petruzzelli R, Rossi A, Finazzi A (1992) Refined crystal structure of ascorbate oxidase at 1.9 A resolution. J Mol Biol 224:179-205
24. Niku-Paavola ML, Karhunen E, Salola P, Raunio V (1988) Ligninolytic enzymes of the white-rot fungus Phlebia radiate. Biochem J 254:877-883
25. Otterbein L, Record E, Longhi S, Asther M, Moukha S (2000) Molecular cloning of the cDNA encoding laccase from Pycnoporus cinnabarinus I-937 and expression in Pichia pastoris. Eur J Biochem 267:1619-1625 (Pubitemid 30165513)
26. Pérez J, Sáez L, de la Rubia T, Martinez J (1997) Phanerochaete flavido alba ligninolytic activities and decolourization of partially bio-depurated paper mill wastes. Water Res 31:495-502 (Pubitemid 27122358)
27. Pérez J, de la Rubia T, Ben Hamman O, Martinez J (1998) Phanerochaete flavido-alba laccase induction and modification of manganese peroxidase isoenzyme pattern in decolorized olive oil mill wastewaters. Appl Environ Microbiol 64:2726-2729 (Pubitemid 28303328)
28. Piontek K, Antorini M, Choinowski T (2002) Crystal structure of a laccase from the fungus Trametes versicolor at 1.90-A resolution containing a full complement of coppers. J Biol Chem 277:37663-37669
29. Sambrook J, Russell DW (2001) Molecular cloning: A laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York
30. Soden DM, Dobson AD (2003) The use of amplified flanking region-PCR in the isolation of laccase promoter sequences from the edible fungus Pleurotus sajor-caju. J Appl Microbiol 95:553-562 (Pubitemid 37041088)
31. Stoj CS, Augustine AJ, Zeigler L, Solomon EI, Kosman DJ (2006) Structural basis of the ferrous iron specificity of the yeast ferroxidase, fet3p. Biochemistry 45:12741-12749 (Pubitemid 44630860)
32. Taprab Y, Johjima T, Maeda Y, Moriya S, Trakulnaleamsai S, Noparatnaraporn N, Ohkuma M, Kudo T (2005) Symbiotic fungi produce laccases potentially involved in phenol degradation in fungus combs of fungus-growing termites in Thailand. Appl Environ Microbiol 71:7696-7704 (Pubitemid 41803888)
33. Taylor AB, Stoj CS, Ziegler L, Kosman DJ, Hart PJ (2005) The copper-iron connection in biology: structure of the metallo-oxidase Fet3p. Proc Natl Acad Sci USA 102:15459-15464 (Pubitemid 41528079)
34. Valderrama B, Oliver P, Medrano-Soto A, Vazquez-Duhalt R (2003) Evolutionary and structural diversity of fungal laccases. Antonie Van Leeuwenhoek 84:289-299 (Pubitemid 37407745)