A PCR method for the detection and differentiation of Lentinus edodes and Trametes versicolor in defined-mixed cultures used for wastewater treatment

Applied Microbiology and Biotechnology

Volumn 67, Issue 4, 2005, Pages 524-531

  García Mena, Jaime ^a   Cano Ramirez, Claudia ^a   Garibay Orijel, Claudio ^a   Ramirez Canseco, Sergio ^a   Poggi Varaldo, Héctor M ^a  

^a DEPARTAMENTO DE FÍSICA   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

BIOREMEDIATION; DNA; FRACTIONATION; FUNGI; GENES; PLANT CELL CULTURE;

COPPER-BINDING; ENZYMATIC RESTRICTION; LENTINUS EDODES; TRAMETES VERSICOLOR;

WASTEWATER TREATMENT;

AGAROSE; COPPER; DNA FRAGMENT; GENOMIC DNA; LACCASE;

POLYMERASE CHAIN REACTION;

ANALYTIC METHOD; ARTICLE; BIOREMEDIATION; CONTROLLED STUDY; DNA SEQUENCE; ELECTROPHORESIS; FRACTIONATION; FUNGAL DETECTION; FUNGUS CULTURE; GENE AMPLIFICATION; GENE SEQUENCE; GENOME; LENTINUS EDODES; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHANEROCHAETE; POLYMERASE CHAIN REACTION; PURIFICATION; SOUTHERN BLOTTING; TRAMETES VERSICOLOR; WASTE WATER MANAGEMENT;

CULTURE MEDIA; DNA, FUNGAL; LACCASE; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; PHANEROCHAETE; POLYMERASE CHAIN REACTION; POLYPORALES; SEQUENCE ANALYSIS, DNA; SHIITAKE MUSHROOMS; WASTE DISPOSAL, FLUID; WATER MICROBIOLOGY;

FUNGI; LENTINULA EDODES; PHANEROCHAETE CHRYSOSPORIUM; TRAMETES VERSICOLOR;

EID: 21344448830     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-004-1795-z     Document Type: Article

References (31)

1. Adair S, Kim SH, Breuil C (2002) A molecular approach for early monitoring of decay basidiomycetes in wood chips. FEMS Microbiol Lett 211:117-122
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
3. Ashktorab H, Cohen RJ (1992) Facile isolation of genomic DNA from filamentous fungi. Biotechniques 13:198-200
4. Bogan BW, Lamar R (1996) Polycyclic aromatic hydrocarbon-degrading capabilities of Phanerochaete laevis HHB-1625 and its extracellular ligninolytic enzymes. Appl Environ Microbiol 62:1597-1603
5. Brown AE, Muthumeenakshi S, Sreenivasaprasad S, Mills PR, Swinburne TR (1993) A PCR primer-specific to Cylindrocarpon heteronema for detection of the pathogen in apple wood. FEMS Microbiol Lett 108:117-120
6. Cano-Ramirez C (2001) Quantitative detection of fungi Trametes versicolor and Lentinus edodes in defined mixed culture using a PCR method. B.Sc. Thesis. Universidad Autónoma Metropolitana-Xochimilco, Depto. del Hombre y su Ambiente. México DF, Mexico
7. Challen MP, Andrew JM, Daniel MC (1995) Facile extraction and purification of filamentous fungal DNA. Biotechniques 18:975-977
8. D'Souza TM, Boominathan K, Reddy CA (1996) Isolation of laccase gene specific sequences from white rot and brown rot fungi by PCR. Appl Environ Microbiol 62:3739-3744
9. Das A (1990) Overproduction of protein in Escherichia coli: vectors, hosts and strategies. In: Deutscher MP (ed) Methods in enzymology: guide to protein purification. Academic Press, San Diego, pp 93-112
10. De la Rubia T, Ruiz E, Perez J, Martinez J (2002) Properties of a laccase produced by Phanerochaete flavido-alba induced by vanillin. Arch Microbiol 179:70-73
11. Estrada-Vázquez C, Poggi-Varaldo HM, Hernández-Vera R, Fernández-Villagómez G, Magaña-Plaza I, Hernández- González A (1998) Biological post-treatment of an anaerobically-treated black liquor spills wastewater from Kraft pulp mills. In: Alleman JE, Blatchley ER, Hua I, Jacko RB, Javfert CT, Nies L (eds) 52nd Purdue industrial waste conference. Ann Arbor Sci, Chelsea, Mich., pp 493-503
12. Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118
13. Jasalavich CA, Ostrofsky A, Jellison J (2000) Detection and identification of decay fungi in spruce wood by restriction fragment length polymorphism analysis of amplified genes encoding rRNA. Appl Environ Microbiol 66:4725-4734
14. Johnston CG, Aust SD (1994) Detection of Phanerochaete chrysosporium in soil by PCR and restriction enzyme analysis. Appl Environ Microbiol 60:2350-2354
15. Kreuzinger N, Podeu R, Gruber F, Gobi F, Kubicek CP (1996) Identification of some ectomycorrhizal basidiomycetes by PCR amplification of their gpd (glyceraldehyde-3-phosphate dehydrogenase) genes. Appl Environ Microbiol 62:3432-3438
16. Larena I, Salazar O, Gonzalez V, Julian MC, Rubio V (1999) Design of a primer for ribosomal DNA internal transcribed spacer with enhanced specificity for ascomycetes. J Biotechnol 75:187-194
17. Lecomte P, Peros JP, Blancard D, Bastien N, Delye C (2000) PCR assays that identify the grapevine dieback fungus Eutypa lata. Appl Environ Microbiol 66:4475-4480
18. Leonowicz A, Matuszewska A, Luterek J, Ziegenhagen D, Wojtas-Wasilewska M, Cho NS, Hofrichter M, Rogalski J (1999) Biodegradation of lignin by white rot fungi. Fungal Genet Biol 27:175-185
19. Lund AH, Duch M, Pedersen FS (1996) Increased cloning efficiency by temperature-cycle ligation. Nucleic Acids Res 24:800-801
20. Mayer AM, Staples RC (2002) Laccase: new functions for an old enzyme. Phytochemistry 60:551-565
21. Mougin C, Boyer FD, Caminade E, Rama R (2000) Cleavage of the diketonitrile derivative of the herbicide isoxaflutole by extracellular fungal oxidases. J Agric Food Chem 48:4529-4534
22. Nugent KG, Saville BJ (2004) Forensic analysis of hallucinogenic fungi: a DNA-based approach. Forensic Sci Int 140:147-157
23. Ortega-Clemente LA, Estrada-Vázquez C, Esparza-García F, Caffarel-Méndez S, Rinderknecht-Seijas N, Poggi-Varaldo HM (2004) Integrated biological treatment of recalcitrant effluents from pulp mills. Water Sci Technol 50:145-156
24. Poggi-Varaldo HM (1994) Pollution prevention and wastewater treatment in the pulp and paper industry. Water Wastewater Int 9:12-18
25. Poggi-Varaldo HM (1995) Anaerobic methanogenic consortia for pre-treatment and detoxification of pulp and paper mill wastewaters. In: Poggi-Varaldo HM, Rodríguez-Vázquez R (eds) Proceedings of the 1st International Meeting on Microbial Ecology. Editorial Facultad de Química UNAM, CONACyT Mexico DF, Mexico, pp 53-54
26. Ramirez-Canseco S, Poggi-Varaldo HM, Rodríguez-Vázquez R, Estrada-Vázquez C, Rinderknecht-Seijas N (2000) Fungal posttreatment of an anaerobically-treated black liquor-contaminated effluent from a Kraft pulp mill. In: Foresti E, Chemicharo CAL, Kato MT, Florencio L, Santos de Lima E (eds) Proceedings of the 6th Latin American workshop and seminar on anaerobic digestion, vol 2. Recife, Pernambuco. 5-9 September 2000. Editora Universitaria da UFPE, Recife, Pernambuco, pp 191-195
27. Regalado V, Perestelo F, Rodríguez A, Carnicero A, Sosa FJ, De la Fuente G, Falcón MA (1999) Activated oxygen species and two extracellular enzymes: laccase and aryl-alcohol oxidase, novel for the lignin-degrading fungus Fusarium proliferatum. Appl Microbiol Biotechnol 51:388-390
28. Robles A, Lucas R, Alvarez-de-Cienfuegos G, Gálvez A (2000) Phenol-oxidase (laccase) activity in strains of the hyphomycete Chalara paradoxa isolated from olive mill wastewater disposal ponds. Enzyme Microb Technol 26:484-490
29. Stuardo M, Vasquez M, Vicuna R, Gonzalez B (2004) Molecular approach for analysis of model fungal genes encoding ligninolytic peroxidases in wood-decaying soil systems. Lett Appl Microbiol 38:43-49
30. Woodcock DM, Crowther PJ, Doherty J, Jefferson S, DeCruz E, Noyer-Weidner M, Smith SS, Michael MZ, Graham MW (1989) Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants. Nucleic Acids Res 17:3469-3478
31. Zhao J, Kwan HS (1999) Characterization, molecular cloning and differential expression analysis of laccase genes from the edible mushroom Lentinula edodes. Appl Environ Microbiol 65:4908-4913