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Volumn 475, Issue 1, 2011, Pages 49-56

Identification and characterization of human PCDH10 gene promoter

Author keywords

CAAT box; NF Y; Sp1 Sp3; TATA less promoter

Indexed keywords

BINDING PROTEIN; CCAAT BINDING FACTOR; GT BOX BINDING PROTEIN; MITHRAMYCIN; MITHRAMYCIN A; PROTOCADHERIN 10; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SP1; TRANSCRIPTION FACTOR SP3; TUMOR SUPPRESSOR PROTEIN; UNCLASSIFIED DRUG;

EID: 79952004216     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2011.01.001     Document Type: Article
Times cited : (12)

References (43)
  • 1
    • 0035077317 scopus 로고    scopus 로고
    • The cadherin superfamily: diversity in form and function
    • Angst B.D., Marcozzi C., Magee A.I. The cadherin superfamily: diversity in form and function. J. Cell Sci. 2001, 114:629-641.
    • (2001) J. Cell Sci. , vol.114 , pp. 629-641
    • Angst, B.D.1    Marcozzi, C.2    Magee, A.I.3
  • 2
    • 0025889742 scopus 로고
    • Mithramycin inhibits SP1 binding and selectively inhibits transcriptional activity of the dihydrofolate reductase gene in vitro and in vivo
    • Blume S.W., Snyder R.C., Ray R., Thomas S., Koller C.A., Miller D.M. Mithramycin inhibits SP1 binding and selectively inhibits transcriptional activity of the dihydrofolate reductase gene in vitro and in vivo. J. Clin. Invest. 1991, 88:1613-1621.
    • (1991) J. Clin. Invest. , vol.88 , pp. 1613-1621
    • Blume, S.W.1    Snyder, R.C.2    Ray, R.3    Thomas, S.4    Koller, C.A.5    Miller, D.M.6
  • 3
    • 33744805985 scopus 로고    scopus 로고
    • Genome-wide analysis of mammalian promoter architecture and evolution
    • Carninci P., et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet. 2006, 38:626-635.
    • (2006) Nat. Genet. , vol.38 , pp. 626-635
    • Carninci, P.1
  • 4
    • 75549089556 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer
    • Cheung H.H., Lee T.L., Davis A.J., Taft D.H., Rennert O.M., Chan W.Y. Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer. Br. J. Cancer 2010, 102:419-427.
    • (2010) Br. J. Cancer , vol.102 , pp. 419-427
    • Cheung, H.H.1    Lee, T.L.2    Davis, A.J.3    Taft, D.H.4    Rennert, O.M.5    Chan, W.Y.6
  • 6
    • 0032549534 scopus 로고    scopus 로고
    • Requirement of a GT box (Sp1 site) and two Ets binding sites for vascular endothelial cadherin gene transcription
    • Gory S., Dalmon J., Prandini M.H., Kortulewski T., de Launoit Y., Huber P. Requirement of a GT box (Sp1 site) and two Ets binding sites for vascular endothelial cadherin gene transcription. J. Biol. Chem. 1998, 273:6750-6755.
    • (1998) J. Biol. Chem. , vol.273 , pp. 6750-6755
    • Gory, S.1    Dalmon, J.2    Prandini, M.H.3    Kortulewski, T.4    de Launoit, Y.5    Huber, P.6
  • 7
    • 0036133044 scopus 로고    scopus 로고
    • AliBaba2: context specific identification of transcription factor binding sites
    • Grabe N. AliBaba2: context specific identification of transcription factor binding sites. In Silico Biol. 2002, 2:S1-S15.
    • (2002) In Silico Biol. , vol.2
    • Grabe, N.1
  • 8
    • 0026474531 scopus 로고
    • Cloning by recognition site screening of two novel GT box binding proteins: a family of Sp1 related genes
    • Hagen G., Muller S., Beato M., Suske G. Cloning by recognition site screening of two novel GT box binding proteins: a family of Sp1 related genes. Nucleic Acids Res. 1992, 20:5519-5525.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5519-5525
    • Hagen, G.1    Muller, S.2    Beato, M.3    Suske, G.4
  • 9
    • 0034284481 scopus 로고    scopus 로고
    • Conserved noncoding sequences are reliable guides to regulatory elements
    • Hardison R.C. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 2000, 16:369-372.
    • (2000) Trends Genet. , vol.16 , pp. 369-372
    • Hardison, R.C.1
  • 10
    • 33745216678 scopus 로고    scopus 로고
    • The role and expression of the protocadherin-alpha clusters in the CNS
    • Hirayama T., Yagi T. The role and expression of the protocadherin-alpha clusters in the CNS. Curr. Opin. Neurobiol. 2006, 16:336-342.
    • (2006) Curr. Opin. Neurobiol. , vol.16 , pp. 336-342
    • Hirayama, T.1    Yagi, T.2
  • 11
    • 33646422462 scopus 로고    scopus 로고
    • Frequent silencing of the candidate tumor suppressor PCDH20 by epigenetic mechanism in non-small-cell lung cancers
    • Imoto I., et al. Frequent silencing of the candidate tumor suppressor PCDH20 by epigenetic mechanism in non-small-cell lung cancers. Cancer Res. 2006, 66:4617-4626.
    • (2006) Cancer Res. , vol.66 , pp. 4617-4626
    • Imoto, I.1
  • 12
    • 0033025047 scopus 로고    scopus 로고
    • Promoter2.0: for the recognition of PolII promoter sequences
    • Knudsen S. Promoter2.0: for the recognition of PolII promoter sequences. Bioinformatics 1999, 15:356-361.
    • (1999) Bioinformatics , vol.15 , pp. 356-361
    • Knudsen, S.1
  • 13
    • 8344280283 scopus 로고    scopus 로고
    • Sp1/Sp3 and the myeloid zinc finger gene MZF1 regulate the human N-cadherin promoter in osteoblasts
    • Le Mee S., Fromigue O., Marie P.J. Sp1/Sp3 and the myeloid zinc finger gene MZF1 regulate the human N-cadherin promoter in osteoblasts. Exp. Cell Res. 2005, 302:129-142.
    • (2005) Exp. Cell Res. , vol.302 , pp. 129-142
    • Le Mee, S.1    Fromigue, O.2    Marie, P.J.3
  • 14
    • 32844465287 scopus 로고    scopus 로고
    • Regulatory mechanisms controlling human E-cadherin gene expression
    • Liu Y.N., Lee W.W., Wang C.Y., Chao T.H., Chen Y., Chen J.H. Regulatory mechanisms controlling human E-cadherin gene expression. Oncogene 2005, 24:8277-8290.
    • (2005) Oncogene , vol.24 , pp. 8277-8290
    • Liu, Y.N.1    Lee, W.W.2    Wang, C.Y.3    Chao, T.H.4    Chen, Y.5    Chen, J.H.6
  • 15
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001, 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 16
    • 77953146864 scopus 로고    scopus 로고
    • Characterization of the mouse CP27 promoter and NF-Y mediated gene regulation
    • Luan X., Ito Y., Zhang Y., Diekwisch T.G. Characterization of the mouse CP27 promoter and NF-Y mediated gene regulation. Gene 2010, 460:8-19.
    • (2010) Gene , vol.460 , pp. 8-19
    • Luan, X.1    Ito, Y.2    Zhang, Y.3    Diekwisch, T.G.4
  • 17
    • 0032851812 scopus 로고    scopus 로고
    • The molecular biology of the CCAAT-binding factor NF-Y
    • Mantovani R. The molecular biology of the CCAAT-binding factor NF-Y. Gene 1999, 239:15-27.
    • (1999) Gene , vol.239 , pp. 15-27
    • Mantovani, R.1
  • 19
    • 0021364584 scopus 로고
    • Structure, expression, and mutation of the hypoxanthine phosphoribosyltransferase gene
    • Melton D.W., Konecki D.S., Brennand J., Caskey C.T. Structure, expression, and mutation of the hypoxanthine phosphoribosyltransferase gene. Proc. Natl Acad. Sci. USA 1984, 81:2147-2151.
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 2147-2151
    • Melton, D.W.1    Konecki, D.S.2    Brennand, J.3    Caskey, C.T.4
  • 20
    • 47249088331 scopus 로고    scopus 로고
    • Identifying autism Loci and genes by tracing recent shared ancestry
    • Morrow E.M., et al. Identifying autism Loci and genes by tracing recent shared ancestry. Science 2008, 321:218-223.
    • (2008) Science , vol.321 , pp. 218-223
    • Morrow, E.M.1
  • 21
    • 34547111084 scopus 로고    scopus 로고
    • Sp1 and Sp3 regulate basal transcription of the human APOBEC3G gene
    • Muckenfuss H., et al. Sp1 and Sp3 regulate basal transcription of the human APOBEC3G gene. Nucleic Acids Res. 2007, 35:3784-3796.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3784-3796
    • Muckenfuss, H.1
  • 23
    • 0034625313 scopus 로고    scopus 로고
    • Phylogenetic analysis of the cadherin superfamily allows identification of six major subfamilies besides several solitary members
    • Nollet F., Kools P., van Roy F. Phylogenetic analysis of the cadherin superfamily allows identification of six major subfamilies besides several solitary members. J. Mol. Biol. 2000, 299:551-572.
    • (2000) J. Mol. Biol. , vol.299 , pp. 551-572
    • Nollet, F.1    Kools, P.2    van Roy, F.3
  • 24
    • 77952887361 scopus 로고    scopus 로고
    • The CCAAT box binding transcription factor, nuclear factor-Y (NF-Y) regulates transcription of human aldo-keto reductase 1C1 (AKR1C1) gene
    • Pallai R., Simpkins H., Chen J., Parekh H.K. The CCAAT box binding transcription factor, nuclear factor-Y (NF-Y) regulates transcription of human aldo-keto reductase 1C1 (AKR1C1) gene. Gene 2010, 459:11-23.
    • (2010) Gene , vol.459 , pp. 11-23
    • Pallai, R.1    Simpkins, H.2    Chen, J.3    Parekh, H.K.4
  • 25
    • 77953156491 scopus 로고    scopus 로고
    • Transcriptional regulation of the Alstrom syndrome gene ALMS1 by members of the RFX family and Sp1
    • Purvis T.L., et al. Transcriptional regulation of the Alstrom syndrome gene ALMS1 by members of the RFX family and Sp1. Gene 2010, 460:20-29.
    • (2010) Gene , vol.460 , pp. 20-29
    • Purvis, T.L.1
  • 26
    • 27544439766 scopus 로고    scopus 로고
    • Sp transcription factor family and its role in cancer
    • Safe S., Abdelrahim M. Sp transcription factor family and its role in cancer. Eur. J. Cancer 2005, 41:2438-2448.
    • (2005) Eur. J. Cancer , vol.41 , pp. 2438-2448
    • Safe, S.1    Abdelrahim, M.2
  • 28
    • 59149083686 scopus 로고    scopus 로고
    • Nuclear factor Y is required for basal activation and chromatin accessibility of fibroblast growth factor receptor 2 promoter in osteoblast-like cells
    • Sun F., Xie Q., Ma J., Yang S., Chen Q., Hong A. Nuclear factor Y is required for basal activation and chromatin accessibility of fibroblast growth factor receptor 2 promoter in osteoblast-like cells. J. Biol. Chem. 2009, 284:3136-3147.
    • (2009) J. Biol. Chem. , vol.284 , pp. 3136-3147
    • Sun, F.1    Xie, Q.2    Ma, J.3    Yang, S.4    Chen, Q.5    Hong, A.6
  • 29
    • 4644226778 scopus 로고    scopus 로고
    • Evidence that Sp1 positively and Sp3 negatively regulate and androgen does not directly regulate functional tumor suppressor 15-lipoxygenase 2 (15-LOX2) gene expression in normal human prostate epithelial cells
    • Tang S., et al. Evidence that Sp1 positively and Sp3 negatively regulate and androgen does not directly regulate functional tumor suppressor 15-lipoxygenase 2 (15-LOX2) gene expression in normal human prostate epithelial cells. Oncogene 2004, 23:6942-6953.
    • (2004) Oncogene , vol.23 , pp. 6942-6953
    • Tang, S.1
  • 30
    • 34548324684 scopus 로고    scopus 로고
    • OL-protocadherin is essential for growth of striatal axons and thalamocortical projections
    • Uemura M., Nakao S., Suzuki S.T., Takeichi M., Hirano S. OL-protocadherin is essential for growth of striatal axons and thalamocortical projections. Nat. Neurosci. 2007, 10:1151-1159.
    • (2007) Nat. Neurosci. , vol.10 , pp. 1151-1159
    • Uemura, M.1    Nakao, S.2    Suzuki, S.T.3    Takeichi, M.4    Hirano, S.5
  • 32
  • 33
    • 71049140477 scopus 로고    scopus 로고
    • Field methylation silencing of the protocadherin 10 gene in cervical carcinogenesis as a potential specific diagnostic test from cervical scrapings
    • Wang K.H., Liu H.W., Lin S.R., Ding D.C., Chu T.Y. Field methylation silencing of the protocadherin 10 gene in cervical carcinogenesis as a potential specific diagnostic test from cervical scrapings. Cancer Sci. 2009.
    • (2009) Cancer Sci.
    • Wang, K.H.1    Liu, H.W.2    Lin, S.R.3    Ding, D.C.4    Chu, T.Y.5
  • 34
    • 0035878392 scopus 로고    scopus 로고
    • Identification and characterization of three members of a novel subclass of protocadherins
    • Wolverton T., Lalande M. Identification and characterization of three members of a novel subclass of protocadherins. Genomics 2001, 76:66-72.
    • (2001) Genomics , vol.76 , pp. 66-72
    • Wolverton, T.1    Lalande, M.2
  • 35
    • 44249108389 scopus 로고    scopus 로고
    • Clustered protocadherin family
    • Yagi T. Clustered protocadherin family. Dev. Growth Differ. 2008, 50(Suppl 1):S131-S140.
    • (2008) Dev. Growth Differ. , vol.50 , Issue.SUPPL. 1
    • Yagi, T.1
  • 36
    • 0034657319 scopus 로고    scopus 로고
    • Cadherin superfamily genes: functions, genomic organization, and neurologic diversity
    • Yagi T., Takeichi M. Cadherin superfamily genes: functions, genomic organization, and neurologic diversity. Genes Dev. 2000, 14:1169-1180.
    • (2000) Genes Dev. , vol.14 , pp. 1169-1180
    • Yagi, T.1    Takeichi, M.2
  • 37
    • 33847379460 scopus 로고    scopus 로고
    • Frequent epigenetic silencing of protocadherin 10 by methylation in multiple haematologic malignancies
    • Ying J., et al. Frequent epigenetic silencing of protocadherin 10 by methylation in multiple haematologic malignancies. Br. J. Haematol. 2007, 136:829-832.
    • (2007) Br. J. Haematol. , vol.136 , pp. 829-832
    • Ying, J.1
  • 38
    • 33244483580 scopus 로고    scopus 로고
    • Functional epigenetics identifies a protocadherin PCDH10 as a candidate tumor suppressor for nasopharyngeal, esophageal and multiple other carcinomas with frequent methylation
    • Ying J., et al. Functional epigenetics identifies a protocadherin PCDH10 as a candidate tumor suppressor for nasopharyngeal, esophageal and multiple other carcinomas with frequent methylation. Oncogene 2006, 25:1070-1080.
    • (2006) Oncogene , vol.25 , pp. 1070-1080
    • Ying, J.1
  • 39
    • 0345306315 scopus 로고    scopus 로고
    • Stability of the Sp3-DNA complex is promoter-specific: Sp3 efficiently competes with Sp1 for binding to promoters containing multiple Sp-sites
    • Yu B., Datta P.K., Bagchi S. Stability of the Sp3-DNA complex is promoter-specific: Sp3 efficiently competes with Sp1 for binding to promoters containing multiple Sp-sites. Nucleic Acids Res. 2003, 31:5368-5376.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5368-5376
    • Yu, B.1    Datta, P.K.2    Bagchi, S.3
  • 40
    • 77954629208 scopus 로고    scopus 로고
    • High-resolution melting analysis of PCDH10 methylation levels in gastric, colorectal and pancreatic cancers
    • Yu B., et al. High-resolution melting analysis of PCDH10 methylation levels in gastric, colorectal and pancreatic cancers. Neoplasma 2010, 57:247-252.
    • (2010) Neoplasma , vol.57 , pp. 247-252
    • Yu, B.1
  • 41
    • 58649120820 scopus 로고    scopus 로고
    • Methylation of protocadherin 10, a novel tumor suppressor, is associated with poor prognosis in patients with gastric cancer
    • Yu J., et al. Methylation of protocadherin 10, a novel tumor suppressor, is associated with poor prognosis in patients with gastric cancer. Gastroenterology 2009, 136:640-651.
    • (2009) Gastroenterology , vol.136 , pp. 640-651
    • Yu, J.1
  • 42
    • 49149121975 scopus 로고    scopus 로고
    • PCDH8, the human homolog of PAPC, is a candidate tumor suppressor of breast cancer
    • Yu J.S., et al. PCDH8, the human homolog of PAPC, is a candidate tumor suppressor of breast cancer. Oncogene 2008, 27:4657-4665.
    • (2008) Oncogene , vol.27 , pp. 4657-4665
    • Yu, J.S.1
  • 43
    • 33845212678 scopus 로고    scopus 로고
    • Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires
    • Zou C., Huang W., Ying G., Wu Q. Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires. Neuroscience 2007, 144:579-603.
    • (2007) Neuroscience , vol.144 , pp. 579-603
    • Zou, C.1    Huang, W.2    Ying, G.3    Wu, Q.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.