PCR and its variations

Advanced Techniques in Diagnostic Microbiology

Volumn , Issue , 2006, Pages 166-183

  Loeffelholz, Michael ^a   Deng, Helen ^b  

^a ViroMed Laboratories Inc Minnesota   (United States)

^b ARKANSAS DEPARTMENT OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 79951957352     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/0-387-32892-0_11     Document Type: Chapter

References (48)

1. Bassam, B. J., & Caetano-Anolles, G. (1993). Automated "hot start" PCR using mineral oil and paraffin wax. Biotechniques, 14(1), 30-34.
2. Bej, A. K., Mahbubani, M. H., Miller, R., DiCesare, J. L., Haff, L., & Atlas, R. M. (1990). Multiplex PCR amplification and immobilized capture probes for detection of bacterial pathogens and indicators in water. Mol Cell Probes, 4(5), 353-365.
3. Birch, D. E. (1996). Simplified hot start PCR. Nature, 381(6581), 445-446.
4. Boyer, N., & Marcellin, P. (2000). Pathogenesis, diagnosis and management of hepatitis C. J Hepatol, 32(1 Suppl), 98-112.
5. Chamberlain, J. S., Gibbs, R. A., Ranier, J. E., Nguyen, P. N., & Caskey, C. T. (1988). Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification. Nucleic Acids Res, 16(23), 11141-11156.
6. Chou, Q., Russell, M., Birch, D. E., Raymond, J., & Bloch, W. (1992). Prevention of pre-PCR mis-priming and primer dimerization improves low-copy-number amplifications. Nucleic Acids Res, 20(7), 1717-1723.
7. Clarke, J. R., & McClure, M. O. (1999). HIV-1 viral load testing. J Infect, 38(3), 141-146.
8. Collasius, M., Falk, H., Ciesler, C., & Valet, G. (1989). How to build an inexpensive cyclotherm instrument for automated polymerase chain reaction. Anal Biochem, 181(1), 163-166.
9. Don, R. H., Cox, P. T., Wainwright, B. J., Baker, K., & Mattick, J. S. (1991). 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res, 19(14), 4008.
10. Fernandez-Cuenca, F.(2004). [ApplicationsofPCR techniques for molecular epidemiology of infectious diseases]. Enferm Infecc Microbiol Clin, 22(6), 355-360.
11. Fredricks, D. N., & Relman, D. A. (1999). Application of polymerase chain reaction to the diagnosis of infectious diseases. Clin Infect Dis, 29(3), 475-486; quiz 487-478.
12. Geha, D. J., Uhl, J. R., Gustaferro, C. A., & Persing, D. H. (1994). Multiplex PCR for identification of methicillin-resistant staphylococci in the clinical laboratory. J Clin Microbiol, 32(7), 1768-1772.
13. Grattard, F., Berthelot, P., Reyrolle, M., Ros, A., Etienne, J., & Pozzetto, B. (1996). Molecular typing of nosocomial strains of Legionella pneumophila by arbitrarily primed PCR. J Clin Microbiol, 34(6), 1595-1598.
14. Haqqi, T. M., Sarkar, G., David, C. S., & Sommer, S. S. (1988). Specific amplification with PCR of a refractory segment of genomic DNA. Nucleic Acids Res, 16(24), 11844.
15. Hodinka, R. L. (1998). The clinical utility of viral quantitation using molecular methods. Clin Diagn Virol, 10(1), 25-47.
16. Horton, R. M., Hoppe, B. L., & Conti-Tronconi, B. M. (1994). AmpliGrease: "hot start" PCR using petroleum jelly. Biotechniques, 16(1), 42-43.
17. Jung, R., Soondrum, K., & Neumaier, M. (2000). Quantitative PCR. Clin Chem Lab Med, 38(9), 833-836.
18. Kebelmann-Betzing, C., Seeger, K., Dragon, S., Schmitt, G., Moricke, A., Schild, T. A., et al. (1998). Advantages of a new Taq DNA polymerase in multiplex PCR and time-release PCR. Biotechniques, 24(1), 154-158.
19. Kellog, D. E. E. A. (1994). TaqStart Antibody': "Hot Start" PCR facilitated by a neutralizing monoclonal antibody directed against Taq DNA polymerase. BioTechniques, 16(6), 1134-1138.
20. MacGowan, A. P., O'Donaghue, K., Nicholls, S., McLauchlin, J., Bennett, P. M., & Reeves, D. S. (1993). Typing of Listeria spp. by random amplified polymorphic DNA (RAPD) analysis. J Med Microbiol, 38(5), 322-327.
21. Martin, U. K., Andrew, J. de Mello and Andreas, M. (1998). Science, 280, 1046-1048.
22. Matsui, C., Pereira, P., Wang, C. K., Nelson, C. F., Kutzkey, T., Lanigan, C., et al. (1998). Extent of laminin-5 assembly and secretion effect junctional epidermolysis bullosa phe-notype. J Exp Med, 187(8), 1273-1283.
23. Moe, C. L., Gentsch, J., Ando, T., Grohmann, G., Monroe, S. S., Jiang, X., et al. (1994). Application of PCR to detect Norwalk virus in fecal specimens from outbreaks of gastroenteritis. J Clin Microbiol, 32(3), 642-648.
24. Mullis, K. B. (1990). The unusual origin of the polymerase chain reaction. Sci Am, 262(4), 56-61, 64-55.
25. Mullis, K. B. (1991). The polymerase chain reaction in an anemic mode: how to avoid cold oligodeoxyribonuclear fusion. PCR Methods Appl, 1(1), 1-4.
26. Mullis, K. B., & Faloona, F. A. (1987). Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol, 155, 335-350.
27. Mylonakis, E., Paliou, M., & Rich, J. D. (2001). Plasma viral load testing in the management of HIV infection. Am Fam Physician, 63(3), 483-490, 495-486.
28. Olive, D. M., & Bean, P. (1999). Principles and applications of methods for DNA-based typing of microbial organisms. J Clin Microbiol, 37(6), 1661-1669.
29. Orlando, C., Pinzani, P., & Pazzagli, M. (1998). Developments in quantitative PCR. Clin Chem Lab Med, 36(5), 255-269.
30. Pang, J., Modlin, J., & Yolken, R. (1992). Use of modified nucleotides and uracil-DNA glycosylase (UNG) for the control of contamination in the PCR-based amplification of RNA. Mol Cell Probes, 6(3), 251-256.
31. Riol, H., Levesque, G., & Murthy, M. R. (1994). A method of using heavy mineral oil for performing "hot-start" amplification of rare nucleic acids. Anal Biochem, 221(1), 210-212.
32. Roberts, T. C., & Storch, G. A. (1997). Multiplex PCR for diagnosis of AIDS-related central nervous system lymphoma and toxoplasmosis. J Clin Microbiol, 35(1), 268-269.
33. Rossister, B. J. F., Grompe, M., and Caskey, C.T. (1991). PCR. A Practical Approach (McPherson, M.J., Quirke, P., AND Taylor, G.R., ed. Vol. Oxford: University Press).
34. Saiki, R. K., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T., et al. (1988). Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239(4839), 487-491.
35. Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A., et al. (1985). Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science, 230(4732), 1350-1354.
36. Schmidt, B., Muellegger, R. R., Stockenhuber, C., Soyer, H. P., Hoedl, S., Luger, A., et al. (1996). Detection of Borrelia burgdorferi-specific DNA in urine specimens from patients with erythema migrans before and after antibiotic therapy. J Clin Microbiol, 34(6), 1359-1363.
37. Tang, Y., and D. H. Persing. (1999). Molecular detection and identification of microorganisms (7th ed. ASM Press ed.). Washington, D. C.
38. Tang, Y. W., Procop, G. W., & Persing, D. H. (1997). Molecular diagnostics of infectious diseases. Clin Chem, 43(11), 2021-2038.
39. Udaykumar, Epstein, J. S., & Hewlett, I. K. (1993). A novel method employing UNG to avoid carry-over contamination in RNA-PCR. Nucleic Acids Res, 21(16), 3917-3918.
40. Upadhyay, P. K. a. G., K. V. (1995). Meas Sci Technol (6), 588-592.
41. van Belkum, A., Kluytmans, J., van Leeuwen, W., Bax, R., Quint, W., Peters, E., et al. (1995). Multicenter evaluation of arbitrarily primed PCR for typing of Staphylococcus aureus strains. J Clin Microbiol, 33(6), 1537-1547.
42. Versalovic, J., Koeuth, T., & Lupski, J. R. (1991). Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res, 19(24), 6823-6831.
43. Welsh, E. A., Clark, H. H., Epstein, S. Z., Reveille, J. D., & Duvic, M. (1994). Human leukocyte antigen-DQB1*03 alleles are associated with alopecia areata. J Invest Derma-tol, 103(6), 758-763.
44. Whelen, A. C., Felmlee, T. A., Hunt, J. M., Williams, D. L., Roberts, G. D., Stockman, L., et al. (1995). Direct genotypic detection of Mycobacterium tuberculosis rifampin resistance in clinical specimens by using single-tube heminested PCR. J Clin Microbiol, 33(3), 556-561.
45. White, T. J., Madej, R., & Persing, D. H. (1992). The polymerase chain reaction: clinical applications. Adv Clin Chem, 29, 161-196.
46. Wittwer, C. T., Fillmore, G. C. and Hillyard, D. R. (1989). Nucleic Acids Res., 17, 4353-4357.
47. Wittwer, C. T., Hillyard, D. R. and Ririe, K. M. (1995). US Patent 5455175.
48. Woods, J. P., Kersulyte, D., Tolan, R. W., Jr., Berg, C. M., & Berg, D. E. (1994). Use of arbitrarily primed polymerase chain reaction analysis to type disease and carrier strains of Neisseria meningitidis isolated during a university outbreak. J Infect Dis, 169(6), 1384-1389.