Characterisation of the coccolithovirus intein

Marine Genomics

Volumn 4, Issue 1, 2011, Pages 1-7

  Allen, Michael J ^a   Lanzén, Anders ^b   Bratbak, Gunnar ^b  

^a PLYMOUTH MARINE LABORATORY   (United Kingdom)

^b UNIVERSITY OF BERGEN   (Norway)

Author keywords

Coccolithovirus; Evolution; Homing endonuclease; Intein; Marine; Virus

Indexed keywords

ENDONUCLEASE; INTEIN; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; PHYCODNAVIRIDAE; PHYSIOLOGY; PROTEIN PROCESSING;

AMINO ACID SEQUENCE; ENDONUCLEASES; GENE EXPRESSION REGULATION, VIRAL; INTEINS; MOLECULAR SEQUENCE DATA; PHYCODNAVIRIDAE; PROTEIN SPLICING; VIRAL PROTEINS;

ANIMALIA; COCCOLITHOVIRUS;

EID: 79951809411     PISSN: 18747787     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.margen.2010.11.001     Document Type: Article

References (23)

1. Allen M.J., Schroeder D.C., Holden M.T., Wilson W.H. Evolutionary history of the Coccolithoviridae. Molecular Biology and Evolution 2006, 23:86-92.
2. Allen M.J., Schroeder D.C., Donkin A., Crawfurd K.J., Wilson W.H. Genome comparison of two coccolithoviruses. Virology Journal 2006, 3.
3. Allen M.J., Forster T., Schroeder D.C., Hall M., Roy D., Ghazal P., Wilson W.H. Locus-specific gene expression pattern suggests a unique propagation strategy for a giant algal virus. Journal of Virology 2006, 80:7699-7705.
4. Allen M.J., Martinez-Martinez J., Schroeder D.C., Somerfield P.J., Wilson W.H. Use of microarrays to assess viral diversity: from genotype to phenotype. Environmental Microbiology 2007, 9:971-982.
5. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. Journal of Molecular Biology 1990, 215:403-410.
6. Amitai G., Dassa B., Pietrokovski S. Protein splicing of inteins with atypical glutamine and aspartate c-terminal residues. Journal of Biological Chemistry 2004, 279:3121-3131.
7. Dalgaard J.Z., Klar A.J., Moser M.J., Holley W.R., Chatterjee A., Mian I.S. Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family. Nucleic Acids Research 1997, 25:4626-4638.
8. Gogarten J.P., Hilario E. Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements. Bmc Evolutionary Biology 2006, 6.
9. Goodwin T.J.D., Butler M.I., Poulter R.T.M. Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes. Bmc Biology 2006, 4.
10. Li H., Pellenz S., Ulge U., Stoddard B.L., Monnat R.J. Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins. Nucleic Acids Research 2009, 37:1650-1662.
11. Liu X.Q. Protein-splicing intein: genetic mobility, origin, and evolution. Annual Review of Genetics 2000, 34:61-76.
12. Nagasaki K., Shirai Y., Tomaru Y., Nishida K., Pietrokovski S. Algal viruses with distinct intraspecies host specificities include identical intein elements. Applied and Environmental Microbiology 2005, 71:3599-3607.
13. Noren C.J., Wang J.M., Perler F.B. Dissecting the chemistry of protein splicing and its applications. Angewandte Chemie-International Edition 2000, 39:450-466.
14. Perler F.B. InBase: the intein database. Nucleic Acids Research 2002, 30:383-384.
15. Perler F.B., Davis E.O., Dean G.E., Gimble F.S., Jack W.E., Neff N., Noren C.J., Thorner J., Belfort M. Protein splicing elements - inteins and exteins - a definition of terms and recommended nomenclature. Nucleic Acids Research 1994, 22:1125-1127.
16. Perler F.B., Olsen G.J., Adam E. Compilation and analysis of intein sequences. Nucleic Acids Research 1997, 25:1087-1093.
17. Pietrokovski S. Modular organization of inteins and C-terminal autocatalytic domains. Protein Science 1998, 7:64-71.
18. Pietrokovski S. Intein spread and extinction in evolution. Trends in Genetics 2001, 17:465-472.
19. Schroeder D.C., Oke J., Malin G., Wilson W.H. Coccolithovirus (Phycodnaviridae): characterisation of a new large dsDNA algal virus that infects Emiliania huxleyi. Archives of Virology 2002, 147:1685-1698.
20. Stoddard B.L. Homing endonuclease structure and function. Quarterly Reviews of Biophysics 2005, 38:49-95.
21. Venter J.C., Remington K., Heidelberg J.F., Halpern A.L., Rusch D., Eisen J.A., Wu D.Y., Paulsen I., Nelson K.E., Nelson W., Fouts D.E., Levy S., Knap A.H., Lomas M.W., Nealson K., White O., Peterson J., Hoffman J., Parsons R., Baden-Tillson H., Pfannkoch C., Rogers Y.H., Smith H.O. Environmental genome shotgun sequencing of the Sargasso Sea. Science 2004, 304:66-74.
22. Wilson W.H., Schroeder D.C., Allen M.J., Holden M.T.G., Parkhill J., Barrell B.G., Churcher C., Hamlin N., Mungall K., Norbertczak H., Quail M.A., Price C., Rabbinowitsch E., Walker D., Craigon M., Roy D., Ghazal P. Complete genome sequence and lytic phase transcription profile of a coccolithovirus. Science 2005, 309:1090-1092.
23. Zdobnov E.M., Apweiler R. InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17:847-848.