The endosomal proteome of macrophage and dendritic cells

Proteomics

Volumn 11, Issue 5, 2011, Pages 854-864

  Duclos, Sophie ^a   Clavarino, Giovanna ^b,c,d   Rousserie, Gilles ^b,c,d   Goyette, Guillaume ^a   Boulais, Jonathan ^a   Camossetto, Voahirana ^b,c,d   Gatti, Evelina ^b,c,d   LaBoissière, Sylvie ^e   Pierre, Philippe ^b,c,d   Desjardins, Michel ^a  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b CENTRE D IMMUNOLOGIE DE MARSEILLE LUMINY   (France)

^c INSERM   (France)

^d CNRS   (France)

^e MCGILL UNIVERSITY   (Canada)

Author keywords

Cell biology; MS; Subcellular fractionation; Vesicular trafficking

Indexed keywords

HYDROLASE; LATEX; LIPOPOLYSACCHARIDE; PROTEOME;

ANIMAL CELL; ARTICLE; CELL FRACTIONATION; CELL ISOLATION; CELL MATURATION; CELL ORGANELLE; CELL TYPE; CELL VACUOLE; CONTROLLED STUDY; CYTOLOGY; DENDRITIC CELL; ELECTRON MICROSCOPY; ENDOCYTOSIS; ENDOSOME; IMMUNOCOMPETENT CELL; IMMUNOFLUORESCENCE; MACROPHAGE; MASS SPECTROMETRY; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONTENT; PROTEIN LOCALIZATION;

ANIMALS; BONE MARROW; CELL FRACTIONATION; CELL LINE; CENTRIFUGATION, DENSITY GRADIENT; DENDRITIC CELLS; ENDOCYTOSIS; ENDOSOMES; LIPOPOLYSACCHARIDES; LYSOSOMES; MACROPHAGES; MALE; MICE; MICROSPHERES; PHAGOSOMES; PROTEINS; PROTEOME; SUCROSE;

EID: 79951744514     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000577     Document Type: Article

References (47)

1. Mukherjee, S., Ghosh, R. N., Maxfield, F. R., Endocytosis. Physiol. Rev. 1997, 77, 759-803.
2. Tarrago-Trani, M. T., Storrie, B., Alternate routes for drug delivery to the cell interior: pathways to the Golgi apparatus and endoplasmic reticulum. Adv. Drug Deliv. Rev. 2007, 59, 782-797.
3. Shiflett, S. L., Kaplan, J., Ward, D. M., Chediak-Higashi Syndrome: a rare disorder of lysosomes and lysosome related organelles. Pigment Cell Res. 2002, 15, 251-257.
4. Olkkonen, V. M., Ikonen, E., When intracellular logistics fails--genetic defects in membrane trafficking. J. Cell. Sci. 2006, 119, 5031-5045.
5. Green, K. L., Cameron, R., Polivy, J., Cooper, K. et al., Weight dissatisfaction and weight loss attempts among Canadian adults. Canadian Heart Health Surveys Research Group. Can. Med. Assoc. J. 1997, 157, S17-S25.
6. Ameen, N., Silvis, M., Bradbury, N. A., Endocytic trafficking of CFTR in health and disease. J. Cyst. Fibros 2007, 6, 1-14.
7. Sturley, S. L., Patterson, M. C., Balch, W., Liscum, L., The pathophysiology and mechanisms of NP-C disease. Biochim. Biophys. Acta 2004, 1685, 83-87.
8. Bohn, G., Allroth, A., Brandes, G., Thiel, J. et al., A novel human primary immunodeficiency syndrome caused by deficiency of the endosomal adaptor protein p14. Nat. Med. 2007, 13, 38-45.
9. Roepstorff, K., Grovdal, L., Grandal, M., Lerdrup, M., van Deurs, B., Endocytic downregulation of ErbB receptors: mechanisms and relevance in cancer. Histochem. Cell Biol. 2008, 129, 563-578.
10. Lakadamyali, M., Rust, M. J., Zhuang, X., Endocytosis of influenza viruses. Microbes Infect. 2004, 6, 929-936.
11. Heller, K. N., Gurer, C., Munz, C., Virus-specific CD4+ T cells: ready for direct attack. J. Exp. Med. 2006, 203, 805-808.
12. Gruenberg, J., van der Goot, F. G., Mechanisms of pathogen entry through the endosomal compartments. Nat. Rev. Mol. Cell. Biol. 2006, 7, 495-504.
13. Besteiro, S., Tonn, D., Tetley, L., Coombs, G. H., Mottram, J. C., The AP3 adaptor is involved in the transport of membrane proteins to acidocalcisomes of Leishmania. J. Cell. Sci. 2008, 121, 561-570.
14. Starr, T., Ng, T. W., Wehrly, T. D., Knodler, L. A., Celli, J., Brucella intracellular replication requires trafficking through the late endosomal/lysosomal compartment. Traffic 2008, 9, 678-694.
15. Pierre, P., Turley, S. J., Gatti, E., Hull, M. et al., Developmental regulation of MHC class II transport in mouse dendritic cells. Nature 1997, 388, 787-792.
16. Vyas, J. M., Kim, Y. M., Artavanis-Tsakonas, K., Love, J. C. et al., Tubulation of class II MHC compartments is microtubule dependent and involves multiple endolysosomal membrane proteins in primary dendritic cells. J. Immunol. 2007, 178, 7199-7210.
17. Chow, A., Toomre, D., Garrett, W., Mellman, I., Dendritic cell maturation triggers retrograde MHC class II transport from lysosomes to the plasma membrane. Nature 2002, 418, 988-994.
18. Garin, J., Diez, R., Kieffer, S., Dermine, J. F. et al., The phagosome proteome: insight into phagosome functions. J. Cell Biol. 2001, 152, 165-180.
19. Lelouard, H., Ferrand, V., Marguet, D., Bania, J. et al., Dendritic cell aggresome-like induced structures are dedicated areas for ubiquitination and storage of newly synthesized defective proteins. J. Cell Biol. 2004, 164, 667-675.
20. Desjardins, M., Huber, L. A., Parton, R. G., Griffiths, G., Biogenesis of phagolysosomes proceeds through a sequential series of interactions with the endocytic apparatus. J. Cell Biol. 1994, 124, 677-688.
21. Wasiak, S., Legendre-Guillemin, V., Puertollano, R., Blondeau, F. et al., Enthoprotin: a novel clathrin-associated protein identified through subcellular proteomics. J. Cell Biol. 2002, 158, 855-862.
22. Keller, A., Nesvizhskii, A. I., Kolker, E., Aebersold, R., Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 2002, 74, 5383-5392.
23. Nesvizhskii, A. I., Keller, A., Kolker, E., Aebersold, R., A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 2003, 75, 4646-4658.
24. Choi, H., Nesvizhskii, A. I., Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics. J. Proteome Res. 2008, 7, 254-265.
25. Jutras, I., Houde, M., Currier, N., Boulais, J. et al., Modulation of the phagosome proteome by interferon-gamma. Mol. Cell. Proteomics 2008, 7, 697-715.
26. Houde, M., Bertholet, S., Gagnon, E., Brunet, S. et al., Phagosomes are competent organelles for antigen cross-presentation. Nature 2003, 425, 402-406.
27. Gilchrist, A., Au, C. E., Hiding, J., Bell, A. W. et al., Quantitative proteomics analysis of the secretory pathway. Cell 2006, 127, 1265-1281.
28. Proikas-Cezanne, T., Gaugel, A., Frickey, T., Nordheim, A., Rab14 is part of the early endosomal clathrin-coated TGN microdomain. FEBS Lett. 2006, 580, 5241-5246.
29. Daro, E., van der Sluijs, P., Galli, T., Mellman, I., Rab4 and cellubrevin define different early endosome populations on the pathway of transferrin receptor recycling. Proc. Natl. Acad. Sci. USA 1996, 93, 9559-9564.
30. Popoff, V., Mardones, G. A., Tenza, D., Rojas, R. et al., The retromer complex and clathrin define an early endosomal retrograde exit site. J. Cell Sci. 2007, 120, 2022-2031.
31. van Kerkhof, P., Lee, J., McCormick, L., Tetrault, E. et al., Sorting nexin 17 facilitates LRP recycling in the early endosome. EMBO J. 2005, 24, 2851-2861.
32. Simpson, J. C., Griffiths, G., Wessling-Resnick, M., Fransen, J. A. et al., A role for the small GTPase Rab21 in the early endocytic pathway. J. Cell Sci. 2004, 117, 6297-6311.
33. Phan, U. T., Arunachalam, B., Cresswell, P., Gamma-interferon-inducible lysosomal thiol reductase (GILT). Maturation, activity, and mechanism of action. J. Biol. Chem. 2000, 275, 25907-25914.
34. Bagshaw, R. D., Callahan, J. W., Mahuran, D. J., The Arf-family protein, Arl8b, is involved in the spatial distribution of lysosomes. Biochem. Biophys. Res. Commun. 2006, 344, 1186-1191.
35. Chinetti-Gbaguidi, G., Rigamonti, E., Helin, L., Mutka, A. L. et al., Peroxisome proliferator-activated receptor alpha controls cellular cholesterol trafficking in macrophages. J. Lipid Res. 2005, 46, 2717-2725.
36. Desjardins, M., Nzala, N. N., Corsini, R., Rondeau, C., Maturation of phagosomes is accompanied by changes in their fusion properties and size-selective acquisition of solute materials from endosomes. J. Cell Sci. 1997, 110, 2303-2314.
37. Brinkmann, M. M., Spooner, E., Hoebe, K., Beutler, B. et al., The interaction between the ER membrane protein UNC93B and TLR3, 7, and 9 is crucial for TLR signaling. J. Cell Biol. 2007, 177, 265-275.
38. Kim, Y. M., Brinkmann, M. M., Paquet, M. E., Ploegh, H. L., UNC93B1 delivers nucleotide-sensing toll-like receptors to endolysosomes. Nature 2008, 452, 234-238.
39. Trombetta, E. S., Mellman, I., Cell biology of antigen processing in vitro and in vivo. Annu. Rev. Immunol. 2005, 23, 975-1028.
40. Guermonprez, P., Saveanu, L., Kleijmeer, M., Davoust, J. et al., ER-phagosome fusion defines an MHC class I cross-presentation compartment in dendritic cells. Nature 2003, 425, 397-402.
41. Roxrud, I., Stenmark, H., Malerod, L., ESCRT & Co. Biol Cell. 2010, 102, 293-318.
42. Fialka, I., Pasquali, C., Lottspeich, F., Ahorn, H., Huber, L. A., Subcellular fractionation of polarized epithelial cells and identification of organelle-specific proteins by two-dimensional gel electrophoresis. Electrophoresis 1997, 18, 2582-2590.
43. Huber, L. A., Pfaller, K., Vietor, I., Organelle proteomics: implications for subcellular fractionation in proteomics. Circ. Res. 2003, 92, 962-968.
44. Sagne, C., Gasnier, B., Molecular physiology and pathophysiology of lysosomal membrane transporters. J. Inherit. Metab. Dis. 2008, 31, 259-266.
45. Kim, B. E., Wang, F., Dufner-Beattie, J., Andrews, G. K. et al., Zn2+-stimulated endocytosis of the mZIP4 zinc transporter regulates its location at the plasma membrane. J. Biol. Chem. 2004, 279, 4523-4530.
46. Lee, J., Tattoli, I., Wojtal, K. A., Vavricka, S. R. et al., pH-dependent internalization of muramyl peptides from early endosomes enables Nod1 and Nod2 signaling. J. Biol. Chem. 2009, 284, 23818-23829.
47. Yeramian, A., Martin, L., Serrat, N., Arpa, L. et al., Arginine transport via cationic amino acid transporter 2 plays a critical regulatory role in classical or alternative activation of macrophages. J. Immunol. 2006, 176, 5918-5924.