Efficient decoding with steady-state kalman filter in neural interface systems

IEEE Transactions on Neural Systems and Rehabilitation Engineering

Volumn 19, Issue 1, 2011, Pages 25-34

  Malik, Wasim Q ^a,b,c,d   Truccolo, Wilson ^a,e   Brown, Emery N ^a,c   Hochberg, Leigh R ^a,b,d  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b Brown University   (United States)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^d DEPARTMENT OF VETERANS AFFAIRS   (United States)

^e BROWN UNIVERSITY   (United States)

Author keywords

Braincomputer interfaces (BCI); brainmachine interfaces (BMI); Kalman filter; motor cortex; neural decoding; paralysis; spinal cord injury; state space models; tetraplegia

Indexed keywords

BRAINCOMPUTER INTERFACES (BCI); BRAINMACHINE INTERFACES (BMI); MOTOR CORTEX; NEURAL DECODING; PARALYSIS; SPINAL CORD INJURY; STATE-SPACE MODELS; TETRAPLEGIA;

COMPUTATIONAL EFFICIENCY; DECODING; DOSIMETRY; INTERACTIVE COMPUTER SYSTEMS; KALMAN FILTERS; PATIENT REHABILITATION;

BRAIN COMPUTER INTERFACE;

ADULT; ALGORITHM; ARTICLE; BRAIN; BRAIN MAPPING; COMPUTER INTERFACE; ELECTROENCEPHALOGRAPHY; EVOKED RESPONSE; FEMALE; HUMAN; MALE; METHODOLOGY; MIDDLE AGED; PATHOPHYSIOLOGY; SIGNAL PROCESSING;

ADULT; ALGORITHMS; BRAIN; BRAIN MAPPING; ELECTROENCEPHALOGRAPHY; EVOKED POTENTIALS; FEMALE; HUMANS; MALE; MIDDLE AGED; SIGNAL PROCESSING, COMPUTER-ASSISTED; USER-COMPUTER INTERFACE;

EID: 79951610312     PISSN: 15344320     EISSN: None     Source Type: Journal    
DOI: 10.1109/TNSRE.2010.2092443     Document Type: Article

References (40)

1. G. Dornheg, J. d. R. Millan, T. Hinterberger, D. J. McFarland, and K. Muller, Toward Brain-Computer Interfacing. Cambridge, MA: MIT Press, 2007.
2. J. Principe, J. C. Sanchez, and J. Enderle, Brain-Machine Interface Engineering. San Rafael, CA: Morgan & Claypool, 2007.
3. M. D. Serruya, N. G. Hatsopoulos, L. Paninski, M. R. Fellows, and J. P. Donoghue, "Instant neural control of a movement signal," Nature, vol. 416, no. 6877, pp. 141-142, Mar. 2002. (Pubitemid 34246464)
4. F. A. Mussa-Ivaldi and L. E. Miller, "Brain-machine interfaces: Computational demands and clinical needs meet basic neuroscience," Trends Neurosci., vol. 26, no. 6, pp. 329-334, Jun. 2003. (Pubitemid 36694321)
5. J. M. Carmena, M. A. Lebedev, R. E. Crist, J. E. O'Doherty, D. M. Santucci, D. F. Dimitrov, P. G. Patil, C. S. Henriquez, and M. A. L. Nicolelis, "Learning to control a brain-machine interface for reaching and grasping by primates," PLoS Biol., vol. 1, no. 2, pp. 193-208, Nov. 2003.
6. L. R. Hochberg, M. D. Serruya, G. M. Friehs, J. Mukand, M. Saleh, A. H. Caplan, A. Branner, D. Chen, R. D. Penn, and J. P. Donoghue, "Neuronal ensemble control of prosthetic devices by a human with tetraplegia," Nature, vol. 442, no. 7099, pp. 164-171, Jul. 2006. (Pubitemid 44086558)
7. G. Santhanam, S. I. Ryu, B. M. Yu, A. Afshar, and K. V. Shenoy, "A high-performance brain-computer interface," Nature, vol. 442, no. 7099, pp. 195-198, Jul. 2006. (Pubitemid 44086565)
8. V. Aggarwal, S. Acharya, F. Tenore, R. Etienne-Cummings, M. H. Schieber, and N. V. Thakor, "Asynchronous decoding of dexterous finger movements using M1 neurons," IEEE Trans Neural Syst. Rehabil. Eng., vol. 16, no. 1, pp. 3-14, Feb. 2008. (Pubitemid 351264085)
9. M. Velliste, S. Perel, M. C. Spalding, A. S. Whitford, and A. B. Schwartz, "Cortical control of a prosthetic arm for self-feeding," Nature, vol. 453, no. 7198, pp. 1098-1101, Jun. 2008. (Pubitemid 351871735)
10. W. Wu and N. G. Hatsopoulos, "Real-time decoding of nonstationary neural activity in motor cortex," IEEE Trans. Neural Syst. Rehabil. Eng., vol. 16, no. 3, pp. 213-222, Jun. 2008. (Pubitemid 351832433)
11. G. H. Mulliken, S. Musallam, and R. A. Andersen, "Decoding trajectories from posterior parietal cortex ensembles," J. Neurosci., vol. 28, no. 48, pp. 12913-12926, Nov. 2008.
12. W. Wu, Y. Gao, E. Bienenstock, J. P. Donoghue, and M. J. Black, "Bayesian population decoding of motor cortical activity using a Kalman filter," Neural Comput., vol. 18, no. 1, pp. 80-118, Jan. 2006. (Pubitemid 43543852)
13. S.-P. Kim, J. D. Simeral, L. R. Hochberg, J. P. Donoghue, and M. J. Black, "Neural control of computer cursor velocity by decoding motor cortical spiking activity in humans with tetraplegia," J. Neural. Eng., vol. 5, no. 4, pp. 455-476, Dec. 2008.
14. W.Wu, A. Shaikhouni, J. P. Donoghue, and M. J. Black, "Closed-loop neural control of cursor motion using a Kalman filter," in Proc. IEEE Eng. Med. Biol. Conf., San Francisco, CA, Sep. 2004, pp. 4126-4129. (Pubitemid 40035159)
15. D. Simon, Optimal State Estimation. New York: Wiley, 2006.
16. C. K. Chui and G. Chen, Kalman Filtering, 4th ed. New York: Springer, 2009.
17. J. M. Mendel, Lessons in Digital Estimation Theory. Upper Saddle River, NJ: Prentice-Hall, 1986.
18. B. M. Yu, C. Kemere, G. Santhanam, A. Afshar, S. I. R. Ryu, T. H. Meng, M. Sahani, and K. V. Shenoy, "Mixture of trajectory models for neural decoding of goal-directed movements," J. Neurophysiol., vol. 97, no. 5, pp. 3763-3780, Feb. 2007. (Pubitemid 47084787)
19. B. M. Yu, J. P. Cunningham, K. V. Shenoy, and M. Sahani, "Neural decoding of movements: From linear to nonlinear trajectory models," in Neural Information Processing. New York: Springer, 2008.
20. A. E. Brockwell, L. Rojas, and R. E. Kass, "Recursive Bayesian decoding of motor cortical signals by particle filtering," J. Neurophysiol., vol. 91, no. 4, pp. 1899-1907, Apr. 2004. (Pubitemid 38339355)
21. S. Shoham, L. M. Paninski, M. R. Fellows, N. G. Hatsopoulos, J. P. Donoghue, and R. A. Normann, "Statistical encoding model for a primary motor cortical brain-machine interface," IEEE Trans. Biomed. Eng., vol. 52, no. 7, pp. 1312-1322, Jul. 2005. (Pubitemid 40965526)
22. R. Barbieri, M. A. Wilson, L. M. Frank, and E. N. Brown, "An analysis of hippocampal spatio-temporal representations using a Bayesian algorithm for neural spike train decoding," IEEE Trans. Neural Syst. Rehabil. Eng., vol. 13, no. 2, pp. 131-136, Jun. 2005. (Pubitemid 41017698)
23. W. Truccolo, G. M. Friehs, J. P. Donoghue, and L. R. Hochberg, "Primary motor cortex tuning to intended movement kinematics in humans with tetraplegia," J. Neurosci., vol. 28, no. 5, pp. 1163-1178, Jan. 2008. (Pubitemid 351186351)
24. W. Wu, M. J. Black, D. Mumford, Y. Gao, E. Bienenstock, and J. P. Donoghue, "Modeling and decoding motor cortical activity using a switching Kalman filter," IEEE Trans. Biomed. Eng., vol. 51, no. 6, pp. 933-942, Jun. 2004. (Pubitemid 38661445)
25. T. Pistohl, T. Ball, A. Schluze-Bonhage, A. Aersten, and C. Mehring, "Prediction of arm movement trajectories from ECoG-recordings in humans," J. Neurosci. Methods, vol. 167, no. 1, pp. 105-114, 2008. (Pubitemid 350180091)
26. G. J. Gage, K. A. Ludwig, K. J. Otto, E. L. Ionides, and D. R. Kipke, "Naive coadaptive cortical control," J. Neural. Eng., vol. 2, no. 2, pp. 52-63, Jun. 2005.
27. Y.Wang and J. C. Principe, "Tracking the non-stationary neuron tuning by dual kalman filter for brain machine interfaces decoding," in Proc. IEEE Conf. Eng. Med. Biol., Vancouver, BC, Canada, Aug. 2008, p. 1720.
28. W. Wu, J. E. Kulkarni, N. G. Hatsopoulos, and L. Paninski, "Neural decoding of hand motion using a linear state-space model with hidden states," IEEE Trans. Neural Syst. Rehab. Eng., vol. 17, no. 4, pp. 370-378, Aug. 2009.
29. Z. Li, J. E. O'Doherty, T. L. Hanson, M. A. Lebedev, C. S. Henriquez, and M. A. L. Nicolelis, "Unscented Kalman filter for brain-machine interfaces," PLoS ONE, vol. 4, no. 7, p. E6243, Jul. 2009.
30. E. Stark and M. Abeles, "Predicting movement from multiunit activity," J. Neurosci., vol. 27, no. 31, pp. 8387-8394, Aug. 2007. (Pubitemid 47219625)
31. D. R. Humphrey, "Systems, methods and devices for controlling external devices by signals derived directly from the nervous system," U.S. 6,171,239, 2001.
32. E. J. Hwang and R. A. Andersen, "Brain control of movement execution onset using local field potentials in posterior parietal cortex," J. Neurosci., vol. 29, no. 45, pp. 14363-14370, Nov. 2009.
33. A. V. Nurmikko, J. P. Donoghue, L. R. Hochberg, W. R. Patterson, Y.-K. Song, C. W. Bull, D. A. Borton, F. Laiwalla, S. Park, Y. Ming, and J. Aceros, "Listening to brain microcircuits for interfacing with external world-progress in wireless implantable microelectronic neuroengineering devices," Proc. IEEE, vol. 98, pp. 375-388, Mar. 2010.
34. H. Miranda, V. Gilja, C. Chestek, K. V. Shenoy, and T. H. Meng, "Hermesd: A high-rate long-range wireless transmission system for simultaneous multichannel neural recording applications," IEEE Trans. Biomed. Circuits Syst., 2010.
35. J. M. Mendel, "Computational requirements for a discrete Kalman filter," IEEE Trans Autom. Control, vol. 16, no. 6, pp. 748-758, Dec. 1970.
36. T. A. Yousry, U. D. Schmid, H. Alkadhi, D. Schmidt, A. Peraud, A. Buettner, and P. Winkler, "Localization of the motor hand area to a knob on the precentral gyrus-A new landmark," Brain, vol. 120, no. 1, pp. 141-157, Jan. 1997. (Pubitemid 27081267)
37. S. Suner, M. R. Fellows, C. Vargas-Irwin, G. K. Nakata, and J. P. Donoghue, "Reliability of signals from chronically implanted, siliconbased electrode array in non-human primate primary motor cortex," IEEE Trans. Neural Syst. Rehabil. Eng., vol. 13, no. 4, pp. 524-541, Dec. 2005. (Pubitemid 43015559)
38. B. N. Datta, Numerical Methods for Linear Control Systems. New York: Elsevier, 2004.
39. S.-P. Kim, F. Wood, M. Fellows, J. P. Donoghue, and M. J. Black, "Statistical analysis of the non-stationarity of neural population codes," in Proc. IEEE Conf. Biomed. Robot. Biomech., Feb. 2006, pp. 811-816. (Pubitemid 44931227)
40. J. M. Carmena, M. A. Lebedev, C. S. Henriquez, and M. A. L. Nicolelis, "Stable ensemble performance with single-neuron variability during reaching movements in primates," J. Neurosci., vol. 25, no. 46, pp. 10712-10716, Nov. 2005. (Pubitemid 41681919)