메뉴 건너뛰기




Volumn 23, Issue 4-5, 1999, Pages 261-267

Detection of sphingomonads and in situ identification in activated sludge using 16S rRNA-targeted oligonucleotide probes

Author keywords

Activated sludge; Alpha 4 Proteobacteria; Floc structure; Fluorescent in situ hybridization (FISH); Gene probes

Indexed keywords

RIBOSOME RNA;

EID: 0033370501     PISSN: 13675435     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.jim.2900768     Document Type: Article
Times cited : (86)

References (41)
  • 2
    • 0000940317 scopus 로고
    • Fluorescently labelled, rRNA-targeted oligonucleotide probes in the study of microbial ecology
    • 2 Amann RI. 1995. Fluorescently labelled, rRNA-targeted oligonucleotide probes in the study of microbial ecology. Molec Ecol 4: 543-554.
    • (1995) Molec Ecol , vol.4 , pp. 543-554
    • Amann, R.I.1
  • 3
    • 0025294528 scopus 로고
    • Combination of 16s rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • 3 Amann RI, BJ Binder, RJ Olson, SW Chisholm, R Devereux and DA Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 4
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • 4 Amann RI, W Ludwig and KH Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 5
    • 0028963471 scopus 로고
    • Studies on a viscous, gel-forming exopolysaccharide from Sphingomonas paucimobilis GS1
    • 5 Ashtaputre AA and AK Shah. 1995. Studies on a viscous, gel-forming exopolysaccharide from Sphingomonas paucimobilis GS1. Appl Environ Microbiol 61: 1159-1161.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1159-1161
    • Ashtaputre, A.A.1    Shah, A.K.2
  • 6
    • 18144453657 scopus 로고    scopus 로고
    • Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp nov, Sphingomonas subterranea sp nov, and Sphingomonas stygia sp nov
    • 6 Balkwill DL, GR Drake, RH Reeves, JK Fredrickson, DC White, DB Ringelberg, DP Chandler, MF Romine, DW Kennedy and CM Spadoni. 1997. Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp nov, Sphingomonas subterranea sp nov, and Sphingomonas stygia sp nov. Int J System Bacteriol 47: 191-201.
    • (1997) Int J System Bacteriol , vol.47 , pp. 191-201
    • Balkwill, D.L.1    Drake, G.R.2    Reeves, R.H.3    Fredrickson, J.K.4    White, D.C.5    Ringelberg, D.B.6    Chandler, D.P.7    Romine, M.F.8    Kennedy, D.W.9    Spadoni, C.M.10
  • 7
    • 0029025721 scopus 로고
    • Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
    • 7 Bond PL, P Hugenholtz, J Keller and LL Blackall. 1995. Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 61: 1910-1916.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3    Blackall, L.L.4
  • 8
    • 0008957991 scopus 로고
    • Formation of cellulose fibrils by Gram-negative bacteria and their role in bacterial floc formation
    • 8 Deinema MH and LPTM Zevenhuizen. 1971. Formation of cellulose fibrils by Gram-negative bacteria and their role in bacterial floc formation. Arch Microbiol 8: 357-361.
    • (1971) Arch Microbiol , vol.8 , pp. 357-361
    • Deinema, M.H.1    Zevenhuizen, L.2
  • 13
    • 0030062395 scopus 로고
    • Genetic and serological evidence for the recognition of four pentachlorphenol-degrading bacterial strains as a species of the genus Sphingomonas
    • 13 Karlson U, F Rojo, JD van Elsas and E Moore. 1995. Genetic and serological evidence for the recognition of four pentachlorphenol-degrading bacterial strains as a species of the genus Sphingomonas. System Appl Microbiol 18: 539-548.
    • (1995) System Appl Microbiol , vol.18 , pp. 539-548
    • Karlson, U.1    Rojo, F.2    Van Elsas, J.D.3    Moore, E.4
  • 14
    • 0029945654 scopus 로고    scopus 로고
    • Homology between genes for aromatic hydrocarbon degradation in surface and deep-surface Sphingomonas strains
    • 14 Kim E, PJ Aversano, MF Romine, RP Schneider and GJ Zylstra. 1996. Homology between genes for aromatic hydrocarbon degradation in surface and deep-surface Sphingomonas strains. Appl Environ Microbiol 62: 1467-1470.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1467-1470
    • Kim, E.1    Aversano, P.J.2    Romine, M.F.3    Schneider, R.P.4    Zylstra, G.J.5
  • 15
    • 0017349777 scopus 로고
    • Some factors affecting floc formation by Zoogloea ramigera, strain 1-16-M
    • 15 Krul JM. 1977. Some factors affecting floc formation by Zoogloea ramigera, strain 1-16-M. Wat Res 11: 51-56.
    • (1977) Wat Res , vol.11 , pp. 51-56
    • Krul, J.M.1
  • 16
    • 0027998116 scopus 로고
    • Bacterial phylogeny based on 16S and 23s rRNA sequence analysis
    • 16 Ludwig W and KH Schleifer. 1994. Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol Rev 15: 155-173.
    • (1994) FEMS Microbiol Rev , vol.15 , pp. 155-173
    • Ludwig, W.1    Schleifer, K.H.2
  • 17
    • 0029843659 scopus 로고    scopus 로고
    • Production and rheological characteristics of the microbial polysaccharide gellan
    • 17 Manna B, A Gambhir and P Ghosh. 1996. Production and rheological characteristics of the microbial polysaccharide gellan. Lett Appl Microbiol 23: 141-145.
    • (1996) Lett Appl Microbiol , vol.23 , pp. 141-145
    • Manna, B.1    Gambhir, A.2    Ghosh, P.3
  • 18
    • 0027313070 scopus 로고
    • In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes
    • 18 Manz W, U Szewzyk, P Eriksson, R Amann, KH Schleifer and TA Stenström. 1993. In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes. Appl Environ Microbiol 59: 2293-2298.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 2293-2298
    • Manz, W.1    Szewzyk, U.2    Eriksson, P.3    Amann, R.4    Schleifer, K.H.5    Stenström, T.A.6
  • 20
    • 0029912111 scopus 로고    scopus 로고
    • Population analysis of a denitrifying sand filter: Conventional and in situ identification of Paracoccus spp in methanol-fed biofilms
    • 20 Neef A, A Zaglauer, H Meier, R Amann, H Lemmer and KH Schleifer. 1996. Population analysis of a denitrifying sand filter: conventional and in situ identification of Paracoccus spp in methanol-fed biofilms. Appl Environ Microbiol 62: 4329-4339.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4329-4339
    • Neef, A.1    Zaglauer, A.2    Meier, H.3    Amann, R.4    Lemmer, H.5    Schleifer, K.H.6
  • 21
    • 0032424081 scopus 로고    scopus 로고
    • Monitoring a widespread bacterial group: In situ detection of planctomycetes with 16S rRNA-targeted probes
    • 21 Neef A, R Amann, H Schlesner and KH Schleifer. 1998. Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Microbiology 144: 3257-3266.
    • (1998) Microbiology , vol.144 , pp. 3257-3266
    • Neef, A.1    Amann, R.2    Schlesner, H.3    Schleifer, K.H.4
  • 23
    • 0027267898 scopus 로고
    • Gellan-related polysaccharides and the genus Sphingomonas
    • 23 Pollock TJ. 1993. Gellan-related polysaccharides and the genus Sphingomonas. J Gen Microbiol 139: 1939-1945.
    • (1993) J Gen Microbiol , vol.139 , pp. 1939-1945
    • Pollock, T.J.1
  • 25
    • 0021971186 scopus 로고
    • A new medium for the enumeration and subculture of bacteria from potable water
    • 25 Reasoner DJ and EE Geldreich. 1985. A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49: 1-7.
    • (1985) Appl Environ Microbiol , vol.49 , pp. 1-7
    • Reasoner, D.J.1    Geldreich, E.E.2
  • 26
    • 0028172253 scopus 로고
    • In situ probing of Gram-positive bacteria with high DNA G+C content by using 23S rRNA-targeted oligonucleotides
    • 26 Roller C, M Wagner, R Amann, W Ludwig and KH Schleifer. 1994. In situ probing of Gram-positive bacteria with high DNA G+C content by using 23S rRNA-targeted oligonucleotides. Microbiology 140: 2849-2858.
    • (1994) Microbiology , vol.140 , pp. 2849-2858
    • Roller, C.1    Wagner, M.2    Amann, R.3    Ludwig, W.4    Schleifer, K.H.5
  • 28
    • 0003341851 scopus 로고
    • Development and application of nucelic acid probes in bacterial systematics
    • (Stackebrandt E and M Goodfellow, eds), John Wiley & Sons, Chichester, UK
    • 28 Stahl DA and R Amann. 1991. Development and application of nucelic acid probes in bacterial systematics. In: Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt E and M Goodfellow, eds), pp 205-248, John Wiley & Sons, Chichester, UK.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 29
    • 0016915156 scopus 로고
    • The nature of the activated sludge flocs
    • 29 Steiner AE, DA McLaren and CF Forster. 1976. The nature of the activated sludge flocs. Wat Res 10: 25-30.
    • (1976) Wat Res , vol.10 , pp. 25-30
    • Steiner, A.E.1    McLaren, D.A.2    Forster, C.F.3
  • 30
    • 0028917702 scopus 로고
    • Taxonomic study of bacteria isolated from plants: Proposal of Sphingomonas rosa sp nov, Sphingomonas pruni sp nov, Sphingomonas asaccharolytica sp nov, and Sphingomonas mali sp nov
    • 30 Takeuchi M, T Sakane, M Yanagi, K Yamasato, K Hamana and A Yokota. 1995. Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp nov, Sphingomonas pruni sp nov, Sphingomonas asaccharolytica sp nov, and Sphingomonas mali sp nov. Int J System Bacteriol 45: 334-341.
    • (1995) Int J System Bacteriol , vol.45 , pp. 334-341
    • Takeuchi, M.1    Sakane, T.2    Yanagi, M.3    Yamasato, K.4    Hamana, K.5    Yokota, A.6
  • 31
    • 0027473874 scopus 로고
    • Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp in rRNA superfamily IV
    • 31 van Bruggen AHC, KN Jochimsen, EM Steinberger, P Segers and M Gillis. 1993. Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp in rRNA superfamily IV. Int J System Bacteriol 43: 1-7.
    • (1993) Int J System Bacteriol , vol.43 , pp. 1-7
    • Van Bruggen, A.H.C.1    Jochimsen, K.N.2    Steinberger, E.M.3    Segers, P.4    Gillis, M.5
  • 32
    • 0027299353 scopus 로고
    • Probing activated sludge with proteobacteria-specific oligonucleotides: Inadequacy of culture-dependent methods for describing microbial community structure
    • 32 Wagner M, R Amann, H Lemmer and KH Schleifer. 1993. Probing activated sludge with proteobacteria-specific oligonucleotides: inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol 59: 1520-1525.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1520-1525
    • Wagner, M.1    Amann, R.2    Lemmer, H.3    Schleifer, K.H.4
  • 33
    • 0028271364 scopus 로고
    • Development of an rRNA-targeted oligonucleotide probe for the genus Acinetobacter and its application for in situ monitoring in activated sludge
    • 33 Wagner M, R Erhart, W Manz, R Amann, H Lemmer, D Wedi and KH Schleifer. 1994. Development of an rRNA-targeted oligonucleotide probe for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl Environ Microbiol 60: 792-800.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 792-800
    • Wagner, M.1    Erhart, R.2    Manz, W.3    Amann, R.4    Lemmer, H.5    Wedi, D.6    Schleifer, K.H.7
  • 35
    • 0023607628 scopus 로고
    • Molecular hybridization of immobilized nucleic acids: Theoretical concepts and practical considerations
    • 35 Wahl GM, SL Berger and AR Kimmel. 1987. Molecular hybridization of immobilized nucleic acids: theoretical concepts and practical considerations. Meth Enzymol 152: 399-407.
    • (1987) Meth Enzymol , vol.152 , pp. 399-407
    • Wahl, G.M.1    Berger, S.L.2    Kimmel, A.R.3
  • 36
    • 0029070337 scopus 로고
    • Flow cytometric analysis of activated sludge with rRNA-targeted probes
    • 36 Wallner G, R Erhart and R Amann. 1995. Flow cytometric analysis of activated sludge with rRNA-targeted probes. Appl Environ Microbiol 61: 1859-1866.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1859-1866
    • Wallner, G.1    Erhart, R.2    Amann, R.3
  • 37
    • 0030049788 scopus 로고    scopus 로고
    • Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by Sphingomonas sp strain RW1
    • 37 Wilkes H, RM Wittich, KN Timmis, P Fortnagel and W Francke. 1996. Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by Sphingomonas sp strain RW1. Appl Environ Microbiol 62: 367-371.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 367-371
    • Wilkes, H.1    Wittich, R.M.2    Timmis, K.N.3    Fortnagel, P.4    Francke, W.5
  • 38
    • 0025219590 scopus 로고
    • Proposals of Sphingomonas paurimobilis gen nov, and comb nov, Sphingomonas parapaucimobilis sp nov, Sphingomonas yanoikuyae sp nov, Sphingomonas adhaesiva sp nov, Sphingomonas capsulata comb nov, and two genospecies of the genus Sphingomonas
    • 38 Yabuuchi E, I Yano, H Oyaizu, Y Hashimoto, T Ezaki and H Yamamoto. 1990. Proposals of Sphingomonas paurimobilis gen nov, and comb nov, Sphingomonas parapaucimobilis sp nov, Sphingomonas yanoikuyae sp nov, Sphingomonas adhaesiva sp nov, Sphingomonas capsulata comb nov, and two genospecies of the genus Sphingomonas. Microbiol Immunol 34: 99-119.
    • (1990) Microbiol Immunol , vol.34 , pp. 99-119
    • Yabuuchi, E.1    Yano, I.2    Oyaizu, H.3    Hashimoto, Y.4    Ezaki, T.5    Yamamoto, H.6
  • 39
    • 0032932864 scopus 로고    scopus 로고
    • Proposal of Sphingomonas suberifaciens (van Bruggen, Jochimsen and Brown 1990) comb nov. Sphingomonas natatoria (Sly 1985) comb nov, Sphingomonas ursincola (Yurkov et al 1997) comb nov, and emendation of the genus Sphingomonas
    • 39 Yabuuchi E, Y Kosako, T Naka, S Suzuki and I Yano. 1999. Proposal of Sphingomonas suberifaciens (van Bruggen, Jochimsen and Brown 1990) comb nov. Sphingomonas natatoria (Sly 1985) comb nov, Sphingomonas ursincola (Yurkov et al 1997) comb nov, and emendation of the genus Sphingomonas. Microbiol Immunol 43: 339-349.
    • (1999) Microbiol Immunol , vol.43 , pp. 339-349
    • Yabuuchi, E.1    Kosako, Y.2    Naka, T.3    Suzuki, S.4    Yano, I.5
  • 40
    • 0029914954 scopus 로고    scopus 로고
    • Linkage of genes essential for synthesis of a polysaccharide capsule in Sphingomonas strain S88
    • 40 Yamazaki M, L Thorne, M Mikolajczak, RW Armentrout and TJ Pollock. 1996. Linkage of genes essential for synthesis of a polysaccharide capsule in Sphingomonas strain S88. J Bacteriol 178: 2676-2687.
    • (1996) J Bacteriol , vol.178 , pp. 2676-2687
    • Yamazaki, M.1    Thorne, L.2    Mikolajczak, M.3    Armentrout, R.W.4    Pollock, T.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.