Oleibacter marinus gen. nov., sp. nov., a bacterium that degrades petroleum aliphatic hydrocarbons in a tropical marine environment

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 2, 2011, Pages 375-380

  Teramoto, Maki ^a   Ohuchi, Motoyuki ^a   Hatmanti, Ariani ^b   Darmayati, Yeti ^b   Widyastuti, Yantyati ^b   Harayama, Shigeaki ^a   Fukunaga, Yukiyo ^a  

^a NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^b INDONESIAN INSTITUTE OF SCIENCES   (Indonesia)

Author keywords

[No Author keywords available]

Indexed keywords

ALIPHATIC HYDROCARBON; ALKANE; BACTERIAL DNA; FATTY ACID; GLYCOLIPID; PETROLEUM; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S; SEA WATER;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DEGRADATION; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; GAMMAPROTEOBACTERIA; GENOTYPE; GRAM NEGATIVE BACTERIUM; MARINE ENVIRONMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEANOBACTER KRIEGII; OLEIBACTER MARINUS; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; THALASSOLITUUS OLEIVORANS; WATER SUPPLY;

ALKANES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; GENOTYPE; MOLECULAR SEQUENCE DATA; OCEANOSPIRILLACEAE; PETROLEUM; PHENOTYPE; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; NEGIBACTERIA; OCEANOBACTER KRIEGII; THALASSOLITUUS OLEIVORANS;

EID: 79951586888     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.018671-0     Document Type: Article

References (33)

1. Bowditch, R. D., Baumann, L. Baumann, P. (1984). Description of Oceanospirillum kriegii sp. nov. and O. jannaschii sp. nov. and assignment of two species of Alteromonas to this genus as O. commune comb. nov. and O. vagum comb. nov. Curr Microbiol 10, 221-230. (Pubitemid 14076977)
2. Buck, J. D. (1982). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
3. Cappello, S., Caruso, G., Zampino, D., Monticelli, L. S., Maimone, G., Denaro, R., Tripodo, B., Troussellier, M., Yakimov, M. & Giuliano, L. (2007). Microbial community dynamics during assays of harbour oil spill bioremediation: a microscale simulation study. J Appl Microbiol 102, 184-194. (Pubitemid 44952802)
4. Coulon, F., McKew, B. A., Osborn, A. M., McGenity, T. J. & Timmis, K. N. (2007). Effects of temperature and biostimulation on oildegrading microbial communities in temperate estuarine waters. Environ Microbiol 9, 177-186. (Pubitemid 46059008)
5. Dittmer, J. C. & Lester, R. L. (1964). A simple, specific spray for the detection of phospholipids on thin-layer chromatograms. J Lipid Res 15, 126-127.
6. Dyksterhouse, S. E., Gray, J. P., Herwig, R. P., Lara, J. C. & Staley, J. T. (1995). Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments. Int J Syst Bacteriol 45, 116-123.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Fukunaga, Y., Kurahashi, M., Yanagi, K., Yokota, A. & Harayama, S. (2008). Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'. Int J Syst Evol Microbiol 58, 2597-2601.
10. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
11. Hara, A., Syutsubo, K. & Harayama, S. (2003). Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation. Environ Microbiol 5, 746-753. (Pubitemid 37056859)
12. Harayama, S., Kasai, Y. & Hara, A. (2004). Microbial communities in oil-contaminated seawater. Curr Opin Biotechnol 15, 205-214. (Pubitemid 38749042)
13. Head, I. M., Jones, D. M. & Roling, W. F. (2006). Marine microorganisms make a meal of oil. Nat Rev Microbiol 4, 173-182.
14. Kasai, Y., Kishira, H., Syutsubo, K. & Harayama, S. (2001). Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident. Environ Microbiol 3, 246-255.
15. Kasai, Y., Kishira, H. & Harayama, S. (2002). Bacteria belonging to the genus Cycloclasticus play a primary role in the degradation of aromatic hydrocarbons released in a marine environment. Appl Environ Microbiol 68, 5625-5633. (Pubitemid 35265701)
16. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
17. Maruyama, A., Ishiwata, H., Kitamura, K., Sunamura, M., Fujita, T., Matsuo, M. & Higashihara, T. (2003). Dynamics of microbial populations and strong selection for Cycloclasticus pugetii following the Nakhodka oil spill. Microb Ecol 46, 442-453. (Pubitemid 38065851)
18. McKew, B. A., Coulon, F., Osborn, A. M., Timmis, K. N. & McGenity, T. J. (2007). Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environ Microbiol 9, 165-176. (Pubitemid 46059007)
19. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
20. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95. (Pubitemid 9239553)
21. Prince, R. C. (2005). The microbiology of marine oil spill bioremediation. In Petroleum Microbiology, pp. 317-335. Edited by B. Ollivier & M. Magot. Washington, DC: American Society for Microbiology.
22. Roling, W. F., Milner, M. G., Jones, D. M., Lee, K., Daniel, F., Swannell, R. J. & Head, I. M. (2002). Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl Environ Microbiol 68, 5537-5548. (Pubitemid 35265690)
23. Roling, W. F., Milner, M. G., Jones, D. M., Fratepietro, F., Swannell, R. P., Daniel, F. & Head, I. M. (2004). Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil. Appl Environ Microbiol 70, 2603-2613. (Pubitemid 38657769)
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Satomi, M., Kimura, B., Hamada, T., Harayama, S. & Fujii, T. (2002). Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov. Int J Syst Evol Microbiol 52, 739-747. (Pubitemid 34594119)
26. Shaw, N. (1968). The detection of lipids on thin-layer chromatograms with the periodate-Schiff reagents. Biochim Biophys Acta 164, 435-436.
27. Swofford, D. (2000). PAUP 4.0b7a: phylogenetic analysis using parsimony (and other methods). Sunderland, MA: Sinauer Associates.
28. Teramoto, M. & Harayama, S. (2011). Potential for petroleum aliphatic hydrocarbon degradation of the key bacteria in temperate seas. In The Marine Environment: Ecology, Management and Conservation. Edited by A. D. Nemeth. New York: Nova Science (in press).
29. Teramoto, M., Suzuki, M., Okazaki, F., Hatmanti, A. & Harayama, S. (2009). Oceanobacter-related bacteria are important for the degradation of petroleum aliphatic hydrocarbons in the tropical marine environment. Microbiology 155, 3362-3370.
30. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882. (Pubitemid 28022245)
31. Yakimov, M. M., Golyshin, P. N., Lang, S., Moore, E. R., Abraham, W. R., Lunsdorf, H. & Timmis, K. N. (1998). Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactantproducing marine bacterium. Int J Syst Bacteriol 48, 339-348. (Pubitemid 28272387)
32. Yakimov, M. M., Giuliano, L., Denaro, R., Crisafi, E., Chernikova, T. N., Abraham, W.-R., Luensdorf, H., Timmis, K. N. & Golyshin, P. N. (2004). Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons. Int J Syst Evol Microbiol 54, 141-148. (Pubitemid 38185772)
33. Yakimov, M. M., Denaro, R., Genovese, M., Cappello, S., D'Auria, G., Chernikova, T. N., Timmis, K. N., Golyshin, P. N. & Giluliano, L. (2005). Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons. Environ Microbiol 7, 1426-1441. (Pubitemid 41204936)