-
1
-
-
0034548825
-
Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN
-
Andreoni, V., Bernasconi, S., Colombo, M., van Beilen, J.B., and Cavalca, L. (2000) Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN. Environ Microbiol 2: 572-577.
-
(2000)
Environ Microbiol
, vol.2
, pp. 572-577
-
-
Andreoni, V.1
Bernasconi, S.2
Colombo, M.3
van Beilen, J.B.4
Cavalca, L.5
-
2
-
-
0019431376
-
Microbial degradation of petroleum hydrocarbons. An environmental perspective
-
Atlas, R.M. (1981) Microbial degradation of petroleum hydrocarbons. An environmental perspective. Microbiol Rev 45: 180-209.
-
(1981)
Microbiol Rev
, vol.45
, pp. 180-209
-
-
Atlas, R.M.1
-
3
-
-
0022504249
-
Biotechnology of petroleum pollutant biodegradation
-
Bartha, R. (1986) Biotechnology of petroleum pollutant biodegradation. Microbial Ecol 12: 155-172.
-
(1986)
Microbial Ecol
, vol.12
, pp. 155-172
-
-
Bartha, R.1
-
4
-
-
19944394252
-
Microbial diversity during biodegradation of crude oil in seawater from the North Sea
-
Brakstad, O.G., and Lodeng, A.G.G. (2005) Microbial diversity during biodegradation of crude oil in seawater from the North Sea. Microbial Ecol 49: 94-103.
-
(2005)
Microbial Ecol
, vol.49
, pp. 94-103
-
-
Brakstad, O.G.1
Lodeng, A.G.G.2
-
5
-
-
0035653257
-
Isolation, characterization, and polyaromatic hydrocarbon degradation potential of aerobic bacteria from marine macrofaunal burrow sediments and description of Lutibacterium anuloederans gen. nov., sp nov. and Cycloclasticus spirillensus sp. nov
-
Chung, W.K., and King, G.M. (2001) Isolation, characterization, and polyaromatic hydrocarbon degradation potential of aerobic bacteria from marine macrofaunal burrow sediments and description of Lutibacterium anuloederans gen. nov., sp nov. and Cycloclasticus spirillensus sp. nov. Appl Environ Microbiol 67: 5585-5592.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5585-5592
-
-
Chung, W.K.1
King, G.M.2
-
6
-
-
33846072571
-
Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters
-
in press, doi:10.1111/j.1462-2920.2006.01126.x
-
Coulon, F., McKew, B.A., Osborn, A.M., McGenity, T.J., and Timmis, K.N. (2006) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environ Microbiol (in press). doi:10.1111/j.1462-2920.2006.01126.x.
-
(2006)
Environ Microbiol
-
-
Coulon, F.1
McKew, B.A.2
Osborn, A.M.3
McGenity, T.J.4
Timmis, K.N.5
-
7
-
-
0028797101
-
Cycloclasticus pugetii gen-nov, sp-nov, an aromatic hydrocarbon-degrading bacterium from marine-sediments
-
Dyksterhouse, S.E., Gray, J.P., Herwig, R.P., Lara, J.C., and Staley, J.T. (1995) Cycloclasticus pugetii gen-nov, sp-nov, an aromatic hydrocarbon-degrading bacterium from marine-sediments. Int J Syst Bacteriol 45: 116-123.
-
(1995)
Int J Syst Bacteriol
, vol.45
, pp. 116-123
-
-
Dyksterhouse, S.E.1
Gray, J.P.2
Herwig, R.P.3
Lara, J.C.4
Staley, J.T.5
-
8
-
-
33846043135
-
-
Felsenstein, J, 2001 PHYLIP Phylogeny Inference Package, Version 3.6.Seattle, WA, USA: Department of Genetics, University of Washington
-
Felsenstein, J. (2001) PHYLIP Phylogeny Inference Package, Version 3.6.Seattle, WA, USA: Department of Genetics, University of Washington.
-
-
-
-
9
-
-
0028974542
-
Some environmental aspects of marine hydrocarbon bacteriology
-
Floodgate, G.D. (1995) Some environmental aspects of marine hydrocarbon bacteriology. Aquat Microb Ecol 9: 3-11.
-
(1995)
Aquat Microb Ecol
, vol.9
, pp. 3-11
-
-
Floodgate, G.D.1
-
10
-
-
0031768236
-
Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of Puget Sound Cycloclasticus strains
-
Geiselbrecht, A.D., Hedlund, B.P., Tichi, M.A., and Staley, J.T. (1998) Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of Puget Sound Cycloclasticus strains. Appl Environ Microbiol 64: 4703-4710.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4703-4710
-
-
Geiselbrecht, A.D.1
Hedlund, B.P.2
Tichi, M.A.3
Staley, J.T.4
-
11
-
-
33846104566
-
-
Golyshin, P.N., Harayama, S., Timmis, K.N., and Yakimov, M.M. (2005) Genus I. Alcanivorax. In Bergeys Manual of Systematic Bacteriology, 2nd edn, 2: The Proteobacteria, Part B: The Gammaproteobacteria. Garrity, G.M. (ed.). Baltimore: Springer-Verlag, pp. 295-299.
-
Golyshin, P.N., Harayama, S., Timmis, K.N., and Yakimov, M.M. (2005) Genus I. Alcanivorax. In Bergeys Manual of Systematic Bacteriology, 2nd edn, Volume 2: The Proteobacteria, Part B: The Gammaproteobacteria. Garrity, G.M. (ed.). Baltimore: Springer-Verlag, pp. 295-299.
-
-
-
-
12
-
-
0041851188
-
Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation
-
Hara, A., Syutsubo, K., and Harayama, S. (2003) Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation. Environ Microbiol 5: 746-753.
-
(2003)
Environ Microbiol
, vol.5
, pp. 746-753
-
-
Hara, A.1
Syutsubo, K.2
Harayama, S.3
-
13
-
-
0033170713
-
Petroleum biodegradation in marine environments
-
Harayama, S., Kishira, H., Kasai, Y., and Shutsubo, K. (1999) Petroleum biodegradation in marine environments. J Molec Microbiol Biotechnol 1: 63-70.
-
(1999)
J Molec Microbiol Biotechnol
, vol.1
, pp. 63-70
-
-
Harayama, S.1
Kishira, H.2
Kasai, Y.3
Shutsubo, K.4
-
14
-
-
0033153161
-
Bioremediation of petroleum hydrocarbon contaminants in marine habitats
-
Head, I.M., and Swannell, R.P.J. (1999) Bioremediation of petroleum hydrocarbon contaminants in marine habitats. Curr Opin Biotech 10: 234-239.
-
(1999)
Curr Opin Biotech
, vol.10
, pp. 234-239
-
-
Head, I.M.1
Swannell, R.P.J.2
-
15
-
-
0031982528
-
Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
-
Head, I.M., Saunders, J.R., and Pickup, R.W. (1998) Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms. Microbial Ecol 35: 1-21.
-
(1998)
Microbial Ecol
, vol.35
, pp. 1-21
-
-
Head, I.M.1
Saunders, J.R.2
Pickup, R.W.3
-
16
-
-
33645994824
-
Marine microorganisms make a meal of oil
-
Head, I.M., Jones, D.M., and Röling, W.F.M. (2006) Marine microorganisms make a meal of oil. Nature Rev Microbiol 4: 173-182.
-
(2006)
Nature Rev Microbiol
, vol.4
, pp. 173-182
-
-
Head, I.M.1
Jones, D.M.2
Röling, W.F.M.3
-
17
-
-
33644948451
-
Isolation and characterization of Pseudoalteromonas strains with divergent polycyclic aromatic hydrocarbon catabolic properties
-
Hedlund, B.P., and Staley, J.T. (2006) Isolation and characterization of Pseudoalteromonas strains with divergent polycyclic aromatic hydrocarbon catabolic properties. Environ Microbiol 8: 178-182.
-
(2006)
Environ Microbiol
, vol.8
, pp. 178-182
-
-
Hedlund, B.P.1
Staley, J.T.2
-
18
-
-
0000732090
-
Evolution of protein molecules
-
Munro, H, ed, New York, USA: Academic Press, pp
-
Jukes, T.H., and Cantor, C.R. (1969) Evolution of protein molecules. In Mammalian Protein Metabolism. Munro, H. (ed.). New York, USA: Academic Press, pp. 21-132.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
19
-
-
0001857117
-
16S/23S sequencing
-
Stackebrandt, E, and Goodfellow, M, eds, Chichester, UK: John Wiley & Sons, pp
-
Lane, D.J. (1991) 16S/23S sequencing. In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt, E., and Goodfellow, M. (eds). Chichester, UK: John Wiley & Sons, pp. 115-175.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
20
-
-
0025180428
-
Microbial degradation of hydrocarbons in the environment
-
Leahy, J.G., and Colwell, R.R. (1990) Microbial degradation of hydrocarbons in the environment. Microbiol Rev 54: 305-315.
-
(1990)
Microbiol Rev
, vol.54
, pp. 305-315
-
-
Leahy, J.G.1
Colwell, R.R.2
-
21
-
-
33745300025
-
-
Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B.J., and Brinkhoff, T. (2006) Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int J Syst Evol Microbiol 56: 1293-1304.
-
Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B.J., and Brinkhoff, T. (2006) Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int J Syst Evol Microbiol 56: 1293-1304.
-
-
-
-
22
-
-
0036268681
-
Impact of irradiation and polycyclic aromatic hydrocarbon spiking on microbial populations in marine sediment for future aging and biodegradability studies
-
Melcher, R.J., Apitz, S.E., and Hemmingsen, B.B. (2002) Impact of irradiation and polycyclic aromatic hydrocarbon spiking on microbial populations in marine sediment for future aging and biodegradability studies. Appl Environ Microb 68: 2858-2868.
-
(2002)
Appl Environ Microb
, vol.68
, pp. 2858-2868
-
-
Melcher, R.J.1
Apitz, S.E.2
Hemmingsen, B.B.3
-
23
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of PCR amplified genes coding for 16S rRNA
-
Muyzer, G., De Waal, E.C., and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of PCR amplified genes coding for 16S rRNA. Appl Environ Microb 59: 695-700.
-
(1993)
Appl Environ Microb
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
24
-
-
0002511466
-
GeneDoc: A tool for editing and annotating multiple sequence alignments
-
Nicholas, K.B., Nicholas, H.B., and Deerfield, D.W. II. (1997) GeneDoc: a tool for editing and annotating multiple sequence alignments. EMBNEW. News 4: 14.
-
(1997)
EMBNEW. News
, vol.4
, pp. 14
-
-
Nicholas, K.B.1
Nicholas, H.B.2
Deerfield II, D.W.3
-
25
-
-
0025272240
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
Pearson, W.R. (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Method Enzymol 183: 63-98.
-
(1990)
Method Enzymol
, vol.183
, pp. 63-98
-
-
Pearson, W.R.1
-
26
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R., and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85: 2444-2448.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
27
-
-
0028174920
-
17-alpha(h),21-beta(h)-hopane as a conserved internal marker for estimating the biodegradation of crude-oil
-
Prince, R.C., Elmendorf, D.L., Lute, J.R., Hsu, C.S., Haith, C.E., Senius, J.D., et al. (1994) 17-alpha(h),21-beta(h)-hopane as a conserved internal marker for estimating the biodegradation of crude-oil. Environ Sci Technol 28: 142-145.
-
(1994)
Environ Sci Technol
, vol.28
, pp. 142-145
-
-
Prince, R.C.1
Elmendorf, D.L.2
Lute, J.R.3
Hsu, C.S.4
Haith, C.E.5
Senius, J.D.6
-
28
-
-
0036840898
-
Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation
-
Röling, W.F.M., Milner, M.G., Jones, D.M., Lee, K., Daniel, F., Swannell, R.J.P., and Head, I.M. (2002) Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl Environ Microb 68: 5537-5548.
-
(2002)
Appl Environ Microb
, vol.68
, pp. 5537-5548
-
-
Röling, W.F.M.1
Milner, M.G.2
Jones, D.M.3
Lee, K.4
Daniel, F.5
Swannell, R.J.P.6
Head, I.M.7
-
29
-
-
2442643152
-
Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil
-
Röling, W.F.M., Milner, M.G., Jones, D.M., Fratepietro, F., Swannell, R.P.J., Daniel, F., and Head, I.M. (2004) Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil. Appl Environ Microb 70: 2603-2613.
-
(2004)
Appl Environ Microb
, vol.70
, pp. 2603-2613
-
-
Röling, W.F.M.1
Milner, M.G.2
Jones, D.M.3
Fratepietro, F.4
Swannell, R.P.J.5
Daniel, F.6
Head, I.M.7
-
30
-
-
0035210375
-
Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains
-
Syutsubo, K., Kishira, H., and Harayama, S. (2001) Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains. Environ Microbiol 3: 371-379.
-
(2001)
Environ Microbiol
, vol.3
, pp. 371-379
-
-
Syutsubo, K.1
Kishira, H.2
Harayama, S.3
-
31
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
32
-
-
2542468340
-
-
US Department of Energy, Energy Information Administration , Washington, DC: Energy Department, Energy Information Administration, Office of Integrated Analysis and Forecasting
-
US Department of Energy, Energy Information Administration (2004) International Energy Outlook - 2004. Washington, DC: Energy Department, Energy Information Administration, Office of Integrated Analysis and Forecasting.
-
(2004)
International Energy Outlook - 2004
-
-
-
33
-
-
17644365496
-
Polycyclic aromatic hydrocarbon biodegradation rates: A structure-based study
-
Wammer, K.H., and Peters, C.A. (2005) Polycyclic aromatic hydrocarbon biodegradation rates: a structure-based study. Environ Sci Technol 39: 2571-2578.
-
(2005)
Environ Sci Technol
, vol.39
, pp. 2571-2578
-
-
Wammer, K.H.1
Peters, C.A.2
-
34
-
-
0031808460
-
Comparison of oil composition changes due to biodegradation and physical weathering in different oils
-
Wang, Z.D., Fingas, M., Blenkinsopp, S., Sergy, G., Landriault, M., Sigouin, L., et al. (1998) Comparison of oil composition changes due to biodegradation and physical weathering in different oils. J Chromatogr A 809: 89-107.
-
(1998)
J Chromatogr A
, vol.809
, pp. 89-107
-
-
Wang, Z.D.1
Fingas, M.2
Blenkinsopp, S.3
Sergy, G.4
Landriault, M.5
Sigouin, L.6
-
35
-
-
0030805158
-
Biodegradation of petroleum hydrocarbons by psychrotrophic Pseudomonas strains possessing both alkane (alk) and naphthalene (nah) catabolic pathways
-
Whyte, L.G., Bourbonniere, L., and Greer, C.W. (1997) Biodegradation of petroleum hydrocarbons by psychrotrophic Pseudomonas strains possessing both alkane (alk) and naphthalene (nah) catabolic pathways. Appl Environ Microb 63: 3719-3723.
-
(1997)
Appl Environ Microb
, vol.63
, pp. 3719-3723
-
-
Whyte, L.G.1
Bourbonniere, L.2
Greer, C.W.3
-
36
-
-
0031778521
-
Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium
-
Yakimov, M.M., Golyshin, P.N., Lang, S., Moore, E.R.B., Abraham, W.R., Lunsdorf, H., and Timmis, K.N. (1998) Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium. Int J Syst Bacteriol 48: 339-348.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 339-348
-
-
Yakimov, M.M.1
Golyshin, P.N.2
Lang, S.3
Moore, E.R.B.4
Abraham, W.R.5
Lunsdorf, H.6
Timmis, K.N.7
-
37
-
-
0442326354
-
Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons
-
Yakimov, M.M., Giuliano, L., Denaro, R., Crisafi, E., Chernikova, T.N., Abraham, W.R., et al. (2004) Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons. Int J Syst Evol Microbiol 54: 141-148.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 141-148
-
-
Yakimov, M.M.1
Giuliano, L.2
Denaro, R.3
Crisafi, E.4
Chernikova, T.N.5
Abraham, W.R.6
-
38
-
-
23944477886
-
Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons
-
Yakimov, M.M., Denaro, R., Genovese, M., Cappello, S., D'Auria, G., Chernikova, T.N., et al. (2005) Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons. Environ Microbiol 7: 1426-1441.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1426-1441
-
-
Yakimov, M.M.1
Denaro, R.2
Genovese, M.3
Cappello, S.4
D'Auria, G.5
Chernikova, T.N.6
|