Molecular and biochemical analysis of the α class carbonic anhydrases in Caenorhabditis elegans

Molecular Biology Reports

Volumn 38, Issue 3, 2011, Pages 1777-1785

  Fasseas, Michael K ^a   Tsikou, Daniela ^a   Flemetakis, Emmanouil ^a   Katinakis, Panagiotis ^a  

^a AGRICULTURAL UNIVERSITY OF ATHENS   (Greece)

Author keywords

Class; C. elegans; Carbonic anhydrase; Nematode; Stress

Indexed keywords

CARBON DIOXIDE; CARBONATE DEHYDRATASE; CARBONATE DEHYDRATASE III; CARBONATE DEHYDRATASE IVA; CARBONATE DEHYDRATASE V; OXYGEN; UNCLASSIFIED DRUG;

ARTICLE; CAENORHABDITIS ELEGANS; CAH 1 GENE; CAH 2 GENE; CAH 3 GENE; CAH 4 GENE; CAH 5 GENE; CAH 6 GENE; CONTROLLED STUDY; ENVIRONMENTAL STRESS; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE; GENE EXPRESSION; GENOME ANALYSIS; LIFESPAN; NONHUMAN; PH; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; SURVIVAL RATE;

ANIMALS; CAENORHABDITIS ELEGANS; CAENORHABDITIS ELEGANS PROTEINS; CARBONIC ANHYDRASES; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENZYME ASSAYS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENETIC COMPLEMENTATION TEST; LONGEVITY; RNA INTERFERENCE; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

CAENORHABDITIS ELEGANS; ESCHERICHIA COLI; SACCHAROMYCES CEREVISIAE;

EID: 79951577606     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0292-y     Document Type: Article

References (30)

1. AJ Esbaugh BL Tufts 2006 The structure and function of carbonic anhydrase isozymes in the respiratory system of vertebrates Respir Physiol Neurobiol 154 185 198 1:CAS:528:DC%2BD28XhtFKmtL7K 10.1016/j.resp.2006.03.007 16679072 (Pubitemid 44666578)
2. D Sterling RAF Reithmeier JR Casey 2001 Carbonic anhydrase: in the driver's seat for bicarbonate transport JOP 2 165 170 1:STN:280: DC%2BD387jvFaquw%3D%3D 11875254 (Pubitemid 38963845)
3. A Liljas M Laurberg 2000 A wheel invented three times EMBO J 1 16 17 1:CAS:528:DC%2BD3cXmtl2gsbw%3D 10.1093/embo-reports/kvd016
4. BC Tripp K Smith JG Ferry 2001 Carbonic anhydrase: new insights for an ancient enzyme J Biol Chem 276 48615 48618 1:CAS:528:DC%2BD38XktlartA%3D%3D 10.1074/jbc.R100045200 11696553
5. SW Sly PY Hu 1995 Human carbonic anhydrases and carbonic anhydrase deficiencies Annu Rev Biochem 64 375 401 1:CAS:528:DyaK2MXmsl2qsbs%3D 10.1146/annurev.bi.64.070195.002111 7574487
6. Fasseas MK, Tsikou D, Flemetakis E, Katinakis P (2009) Molecular and biochemical analysis of the β class carbonic anhydrases in Caenorhabditis elegans. Mol Biol Rep. doi: 10.1007/s11033-009-9857-z
7. RA Hall D Vullo A Innocenti A Scozzafava CT Supuran P Klappaa FA Móhlschlegelt 2008 External pH influences the transcriptional profile of the carbonic anhydrase, CAH-4b in Caenorhabditis elegans Mol Biochem Parasitol 161 140 149 1:CAS:528:DC%2BD1cXhtVWit73K 10.1016/j.molbiopara.2008.06.013 18640159
8. AA DeRosa SR Chirgwin JC Williams TR Klei 2008 Isolation and characterization of a gene encoding carbonic anhydrase from Ostertagia ostertagi and quantitative measurement of expression during in vivo exsheathment Vet Parasitol 154 58 66 1:CAS:528:DC%2BD1cXlvVSrsro%3D 10.1016/j.vetpar.2008.02.021 18400401
9. F Simmer C Moorman AM van der Linden E Kuijk PVE van den Berghe RS Kamath AG Fraser J Ahringer RHA Plasterk 2003 Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions PLoS Biol 1 e12 10.1371/journal.pbio.0000012 14551910 (Pubitemid 39112194)
10. Wormbase (2008) WS193 21. http://ws193.wormbase.org/
11. K Arnold L Bordoli J Kopp T Schwede 2006 The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling Bioinformatics 22 195 201 1:CAS:528:DC%2BD28XovVCltw%3D%3D 10.1093/bioinformatics/bti770 16301204 (Pubitemid 43205406)
12. G Kim TH Lee P Wetzel C Geers MA Robinson TG Myers JW Owens NB Wehr MW Eckhaus G Gros A Wynshaw-Boris RL Levine 2004 Carbonic anhydrase III is not required in the mouse for normal growth, development, and life span Mol Cell Biol 24 9942 9947 1:CAS:528:DC%2BD2cXpslOnu78%3D 10.1128/MCB.24.22.9942-9947. 2004 15509796 (Pubitemid 39458819)
13. TA Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucl Acids Symp Ser 41 95 98 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
14. N Guex MC Peitsch 1997 SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelling Electrophoresis 18 2714 2723 1:CAS:528:DyaK1cXhvFaks70%3D 10.1002/elps.1150181505 9504803 (Pubitemid 28059943)
15. T Schwede J Kopp N Guex MC Peitsch 2003 SWISS-MODEL: an automated protein homology-modeling server Nucleic Acids Res 31 3381 3385 1:CAS:528: DC%2BD3sXltVWjsLg%3D 10.1093/nar/gkg520 12824332 (Pubitemid 37442164)
16. Stiernagle T (2006) Maintenance of C.elegans. In Wormbook (ed) The C. elegans research community. Wormbook, Pasadena. doi: 10.1895/wormbook.1.101.1. http://www.wormbook.org
17. Y Sasagawa T Urano Y Kohara H Takahashi A Higashitani 2003 Caenorhabditis elegans RBX1 is essential for meiosis, mitotic chromosomal condensation and segregation, and cytokinesis Genes Cells 8 857 872 1:CAS:528: DC%2BD3sXpsV2itL4%3D 10.1046/j.1365-2443.2003.00682.x 14622138 (Pubitemid 37428015)
18. R Götz A Gnann FK Zimmermann 1999 Deletion of the carbonic anhydrase-like gene NCE103 of the yeast Saccharomyces cerevisiae causes an oxygen-sensitive growth defect Yeast 15 855 864 10.1002/(SICI)1097-0061(199907) 15:10A<855::AID-YEA425>3.0.CO;2-C 10407265
19. RS Kamath M Martinez-Campos P Zipperlen AG Fraser J Ahringer 2000 Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans Genome Biol 2 1 10 10.1186/gb-2000-2-1-research0002
20. N Kazuyo M Kanemori M Kitagawa H Yanagi T Yura 1998 Chaperone coexpression plasmids: differential and synergistic roles of DnaK-DnaJ-GrpE and GroEL-GroES in assisting folding of an allergen of Japanese cedar pollen, Cryj2, in Escherichia coli Appl Envirol Microbiol 64 1694 1699 (Pubitemid 28234771)
21. M Persson P Hammarstrom M Linden B-H Jonsson M Svensson U Carlsson 1998 EPR mapping of interactions between spin-labeled variants of human carbonic anhydrase II and GroEL: evidence for increased flexibility of the hydrophobic core by the interaction Biochemistry 38 432 441 10.1021/bi981442e (Pubitemid 29035714)
22. D Clark RS Rowlett JR Coleman DF Klessig 2004 Complementation of the yeast deletion mutant ΔNCE103 by members of the β class of carbonic anhydrases is dependent on carbonic anhydrase activity rather that on antioxidant activity Biochem J 379 609 615 1:CAS:528:DC%2BD2cXjsFSmsLs%3D 10.1042/BJ20031711 15096093 (Pubitemid 38703644)
23. Ö Güzel A Innocenti RA Hall A Scozzafava FA Mühlschlegel CT Supuran 2009 Carbonic anhydrase inhibitors. The nematode a-carbonic anhydrase of Caenorhabditis elegans CAH-4b is highly inhibited by 2-(hydrazinocarbonyl)- 3-substituted-phenyl-1H-indole-5-sulfonamides Bioorg Med Chem 17 3212 3215 10.1016/j.bmc.2009.01.048 19201197
24. EA Hallem PW Sternberg 2008 Acute carbon dioxide avoidance in Caenorhabditis elegans PNAS 105 8038 8043 1:CAS:528:DC%2BD1cXns1els7Y%3D 10.1073/pnas.0707469105 18524955 (Pubitemid 351904704)
25. AJ Bretscher KE Busch M de Bono 2008 A carbon dioxide avoidance behaviour is integrated with responses to ambient oxygen and food in Caenorhabditis elegans PNAS 105 8044 8049 1:CAS:528:DC%2BD1cXns1els7c%3D 10.1073/pnas. 0707607105 18524954 (Pubitemid 351904705)
26. T Petronijevic WP Rogers RI Sommerville 1985 Carbonic acid as the host signal for the development of parasitic stages of nematodes Int J Parasitol 15 661 666 1:CAS:528:DyaL28XhtVKluro%3D 10.1016/0020-7519(85)90013-X 3937818 (Pubitemid 16175982)
27. RL Föll A Pleyers GJ Lewandovski C Wermter V Hegemann RJ Paul 1999 Anaerobiosis in the nematode Caenorhabditis elegans Comp Biochem Physiol B 124 269 280 10.1016/S0305-0491(99)00130-3 10631804 (Pubitemid 29502592)
28. WA Van Voorhies S Ward 2000 Broad oxygen tolerance in the nematode Caerorhabditis elegans J Exp Biol 203 2467 2478 10903161
29. M Mochii S Yoshida K Morita Y Kohara N Ueno 1999 Identification of transforming growth factor-β regulated genes in Caenorhabditis elegans by differential hybridization of arrayed cDNAs PNAS 96 15020 15025 1:CAS:528:DC%2BD3cXhtFaksw%3D%3D 10.1073/pnas.96.26.15020 10611331 (Pubitemid 30019758)
30. FL Muller MS Lustgarten Y Jang A Richardson H Van Remmen 2007 Trends in oxidative aging theories Free Radic Biol Med 43 477 503 1:CAS:528: DC%2BD2sXotVWkur0%3D 10.1016/j.freeradbiomed.2007.03.034 17640558 (Pubitemid 47058228)