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Volumn 411, Issue 1, 2011, Pages 80-87

Prefractionation enhances loading capacity and identification of basic proteins from human breast cancer tissues

Author keywords

Batch chromatography; Biomarker identification; Human breast ductal carcinoma in situ; Immobilized pH gradient; Improved resolution and visualization; Ion exchange; LC MS MS; Prefractionation; Protein loading capacity; Two dimensional gel electrophoresis

Indexed keywords

ALKALINITY; BIOMARKERS; ELECTROPHORESIS; ION EXCHANGE; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PH; TISSUE; VISUALIZATION;

EID: 79951577002     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2010.12.010     Document Type: Article
Times cited : (7)

References (45)
  • 1
    • 0023768475 scopus 로고
    • The current state of two-dimensional electrophoresis with immobilized pH gradients
    • A. Gorg, W. Postel, and S. Gunther The current state of two-dimensional electrophoresis with immobilized pH gradients Electrophoresis 9 1988 531 546
    • (1988) Electrophoresis , vol.9 , pp. 531-546
    • Gorg, A.1    Postel, W.2    Gunther, S.3
  • 2
    • 0029020259 scopus 로고
    • Two-dimensional electrophoresis of proteins: An updated protocol and implications for a functional analysis of the genome
    • J. Klose, and U. Kobalz Two-dimensional electrophoresis of proteins: an updated protocol and implications for a functional analysis of the genome Electrophoresis 16 1995 1034 1059
    • (1995) Electrophoresis , vol.16 , pp. 1034-1059
    • Klose, J.1    Kobalz, U.2
  • 3
    • 0030070176 scopus 로고    scopus 로고
    • Resolution power of two-dimensional electrophoresis and identification of proteins from gels
    • DOI 10.1002/elps.1150170505
    • P. Jungblut, B. Thiede, U. ZimnyArndt, E.C. Muller, C. Scheler, B. Wittmann-Liebold, and A. Otto Resolution power of two-dimensional electrophoresis and identification of proteins from gels Electrophoresis 17 1996 839 847 (Pubitemid 26000778)
    • (1996) Electrophoresis , vol.17 , Issue.5 , pp. 839-847
    • Jungblut, P.1    Thiede, B.2    Zimny-Arndt, U.3    Muller, E.-C.4    Scheler, C.5    Wittmann-Liebold, B.6    Otto, A.7
  • 4
    • 0033985173 scopus 로고    scopus 로고
    • Detecting proteins separated by 2-D gel electrophoresis
    • T. Rabilloud Detecting proteins separated by 2-D gel electrophoresis Anal. Chem. 72 2000 48a 55a (Pubitemid 30027727)
    • (2000) Analytical Chemistry , vol.72 , Issue.1
    • Rabilloud, T.1
  • 5
    • 0035356236 scopus 로고    scopus 로고
    • Prefractionation techniques in proteome analysis
    • P.G. Righetti, A. Castagna, and B. Herbert Prefractionation techniques in proteome analysis Anal. Chem. 73 2001 320a 326a
    • (2001) Anal. Chem. , vol.73
    • Righetti, P.G.1    Castagna, A.2    Herbert, B.3
  • 6
    • 79951581788 scopus 로고    scopus 로고
    • Proteomics: Pharmaceutical applications
    • A.I. Smith Proteomics: pharmaceutical applications J. Swarbrick, Encyclopedia of Pharmaceutical Technology 2007 Informa Healthcare New York 3041 3051
    • (2007) Encyclopedia of Pharmaceutical Technology , pp. 3041-3051
    • Smith, A.I.1
  • 7
    • 85128468214 scopus 로고    scopus 로고
    • Methodology and applications of disease biomarker identification in human serum
    • Z.J. Sahab, S.M. Semaan, and A.Q.-X. Sang Methodology and applications of disease biomarker identification in human serum Biomarker Insights 2 2007 21 43
    • (2007) Biomarker Insights , vol.2 , pp. 21-43
    • Sahab, Z.J.1    Semaan, S.M.2    Sang, A.Q.-X.3
  • 8
    • 0024376374 scopus 로고
    • Study of human cerebrospinal fluid proteins by size exclusion-high performance liquid chromatography and two-dimensional gel electrophoresis
    • F. Wiederkehr, M.R. Bueler, M. Wacker, and D.J. Vonderschmitt Study of human cerebrospinal fluid proteins by size exclusion high performance liquid chromatography and two-dimensional gel electrophoresis Electrophoresis 10 1989 480 488 (Pubitemid 19174017)
    • (1989) Electrophoresis , vol.10 , Issue.7 , pp. 480-488
    • Wiederkehr, F.1    Bueler, M.R.2    Wacker, M.3    Vonderschmitt, D.J.4
  • 9
    • 0030896621 scopus 로고    scopus 로고
    • Prefractionation of protein samples prior to two-dimensional electrophoresis
    • DOI 10.1002/elps.1150180304
    • G.L. Corthals, M.P. Molloy, B.R. Herbert, K.L. Williams, and A.A. Gooley Prefractionation of protein samples prior to two-dimensional electrophoresis Electrophoresis 18 1997 317 323 (Pubitemid 27174414)
    • (1997) Electrophoresis , vol.18 , Issue.3-4 , pp. 317-323
    • Corthals, G.L.1    Molloy, M.P.2    Herbert, B.R.3    Williams, K.L.4    Gooley, A.A.5
  • 10
    • 0034855204 scopus 로고    scopus 로고
    • Prefractionation of protein samples for proteome analysis using reversed-phase high-performance liquid chromatography
    • DOI 10.1002/1522-2683(200108)22:14<2856::AID-ELPS2856>3.0.CO;2-U
    • V. Badock, U. Steinhusen, K. Bommert, and A. Otto Prefractionation of protein samples for proteome analysis using reversed-phase high-performance liquid chromatography Electrophoresis 22 2001 2856 2864 (Pubitemid 32851182)
    • (2001) Electrophoresis , vol.22 , Issue.14 , pp. 2856-2864
    • Badock, V.1    Steinhusen, U.2    Bommert, K.3    Otto, A.4
  • 11
    • 0034056940 scopus 로고    scopus 로고
    • The dynamic range of protein expression: A challenge for proteomic research
    • DOI 10.1002/(SICI)1522-2683(20000401)21:6<1104::AID-ELPS1104>3.0. CO;2-C
    • G.L. Corthals, V.C. Wasinger, D.F. Hochstrasser, and J.C. Sanchez The dynamic range of protein expression: a challenge for proteomic research Electrophoresis 21 2000 1104 1115 (Pubitemid 30230776)
    • (2000) Electrophoresis , vol.21 , Issue.6 , pp. 1104-1115
    • Corthals, C.L.1    Wasinger, V.C.2    Hochstrasser, D.F.3    Sanchez, J.-C.4
  • 12
    • 0034633273 scopus 로고    scopus 로고
    • A method for global analysis of complex proteomes using sample prefractionation by solution isoelectrofocusing prior to two-dimensional electrophoresis
    • X. Zuo, and D.W. Speicher A method for global analysis of complex proteomes using sample prefractionation by solution isoelectrofocusing prior to two-dimensional electrophoresis Anal. Biochem. 284 2000 266 278
    • (2000) Anal. Biochem. , vol.284 , pp. 266-278
    • Zuo, X.1    Speicher, D.W.2
  • 13
    • 0032900921 scopus 로고    scopus 로고
    • Improved two-dimensional gel electrophoresis representation of serum proteins by using ProtoClear(TM)
    • DOI 10.1002/(SICI)1522-2683(19990101)20:4/5<854::AID-ELPS854>3.0. CO;2-6
    • B.A. Lollo, S. Harvey, J. Liao, A.C. Stevens, R. Wagenknecht, R. Sayen, J. Whaley, and F.G. Sajjadi Improved two-dimensional gel electrophoresis representation of serum proteins by using ProtoClear Electrophoresis 20 1999 854 859 (Pubitemid 29222441)
    • (1999) Electrophoresis , vol.20 , Issue.4-5 , pp. 854-859
    • Lollo, B.A.1    Harvey, S.2    Liao, J.3    Stevens, A.C.4    Wagenknecht, R.5    Sayen, R.6    Whaley, J.7    Sajjadi, F.G.8
  • 14
    • 72849132958 scopus 로고    scopus 로고
    • Proteomic profiling combining solution-phase isoelectric fractionation with two-dimensional gel electrophoresis using narrow-pH-range immobilized pH gradient gels with slightly overlapping pH ranges
    • K. Lee, and K. Pi Proteomic profiling combining solution-phase isoelectric fractionation with two-dimensional gel electrophoresis using narrow-pH-range immobilized pH gradient gels with slightly overlapping pH ranges Anal. Bioanal. Chem. 396 2010 535 539
    • (2010) Anal. Bioanal. Chem. , vol.396 , pp. 535-539
    • Lee, K.1    Pi, K.2
  • 16
    • 45849117917 scopus 로고    scopus 로고
    • Evaluation of an effective sample prefractionation method for the proteome analysis of breast cancer tissue using narrow range two-dimensional gel electrophoresis
    • DOI 10.1271/bbb.70777
    • K. Lee Evaluation of an effective sample prefractionation method for the proteome analysis of breast cancer tissue using narrow range two-dimensional gel electrophoresis Biosci. Biotechnol. Biochem. 72 2008 1464 1474 (Pubitemid 351883756)
    • (2008) Bioscience, Biotechnology and Biochemistry , vol.72 , Issue.6 , pp. 1464-1474
    • Lee, K.1
  • 18
    • 29144509592 scopus 로고    scopus 로고
    • Isoelectric point-based prefractionation of proteins from crude biological samples prior to two-dimensional gel electrophoresis
    • DOI 10.1021/pr0501822
    • Z.J. Sahab, Y. Suh, and Q.X. Sang Isoelectric point-based prefractionation of proteins from crude biological samples prior to two-dimensional gel electrophoresis J. Proteome Res. 4 2005 2266 2272 (Pubitemid 41814296)
    • (2005) Journal of Proteome Research , vol.4 , Issue.6 , pp. 2266-2272
    • Sahab, Z.J.1    Suh, Y.2    Sang, Q.-X.A.3
  • 19
    • 0031581828 scopus 로고    scopus 로고
    • Gradient chromatofocusing high-performance liquid chromatography I. Practical aspects
    • DOI 10.1016/S0021-9673(96)00854-0, PII S0021967396008540
    • Y.S. Liu, and D.J. Anderson Gradient chromatofocusing high-performance liquid chromatography. 1: Practical aspects J. Chromatogr. A 762 1997 207 217 (Pubitemid 27122831)
    • (1997) Journal of Chromatography A , vol.762 , Issue.1-2 , pp. 207-217
    • Liu, Y.1    Anderson, D.J.2
  • 20
    • 0030998782 scopus 로고    scopus 로고
    • Experimental and numerical studies of the chromatofocusing of dilute proteins using retained pH gradients formed on a strong-base anion-exchange column
    • DOI 10.1016/S0021-9673(96)01049-7, PII S0021967396010497
    • J.C. Strong, and D.D. Frey Experimental and numerical studies of the chromatofocusing of dilute proteins using retained pH gradients formed on a strong-base anion-exchange column J. Chromatogr. A 769 1997 129 143 (Pubitemid 27212313)
    • (1997) Journal of Chromatography A , vol.769 , Issue.2 , pp. 129-143
    • Strong, J.C.1    Frey, D.D.2
  • 21
    • 0032524051 scopus 로고    scopus 로고
    • Enrichment and purification of proteins of Haemophilus influenzae by chromatofocusing
    • DOI 10.1016/S0021-9673(98)00057-0, PII S0021967398000570
    • M. Fountoulakis, H. Langen, C. Gray, and B. Takacs Enrichment and purification of proteins of Haemophilus influenzae by chromatofocusing J. Chromatogr. A 806 1998 279 291 (Pubitemid 28255419)
    • (1998) Journal of Chromatography A , vol.806 , Issue.2 , pp. 279-291
    • Fountoulakis, M.1    Langen, H.2    Gray, C.3    Takacs, B.4
  • 22
    • 0033080738 scopus 로고    scopus 로고
    • Continuous beds for microchromatography: Chromatofocusing and anion exchange chromatography
    • DOI 10.1006/abio.1998.2989
    • Y.M. Li, J.L. Liao, R. Zhang, H. Henriksson, and S. Hjerten Continuous beds for microchromatography: chromatofocusing and anion exchange chromatography Anal. Biochem. 267 1999 121 124 (Pubitemid 29061814)
    • (1999) Analytical Biochemistry , vol.267 , Issue.1 , pp. 121-124
    • Li, Y.-M.1    Liao, J.-L.2    Zhang, R.3    Henriksson, H.4    Hjerten, S.5
  • 23
    • 0035090596 scopus 로고    scopus 로고
    • Chromatofocusing nonporous reversed-phase high-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry of proteins from human breast cancer whole cell lysates: A novel two-dimensional liquid chromatography/mass spectrometry method
    • DOI 10.1002/rcm.227
    • B.E. Chong, F. Yan, D.M. Lubman, and F.R. Miller Chromatofocusing nonporous reversed-phase high-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry of proteins from human breast cancer whole cell lysates: a novel two-dimensional liquid chromatography/mass spectrometry method Rapid Commun. Mass Spectrom. 15 2001 291 296 (Pubitemid 32201564)
    • (2001) Rapid Communications in Mass Spectrometry , vol.15 , Issue.4 , pp. 291-296
    • Chong, B.E.1    Yan, F.2    Lubman, D.M.3    Miller, F.R.4
  • 25
    • 0037953157 scopus 로고    scopus 로고
    • A comparison of drug-treated and untreated HCT-116 human colon adenocarcinoma cells using a 2-D liquid separation mapping method based upon chromatofocusing PI fractionation
    • DOI 10.1021/ac020678s
    • F. Yan, B. Subramanian, A. Nakeff, T.J. Barder, S.J. Parus, and D.M. Lubman A comparison of drug-treated and untreated HCT-116 human colon adenocarcinoma cells using a 2-D liquid separation mapping method based upon chromatofocusing PI fractionation Anal. Chem. 75 2003 2299 2308 (Pubitemid 36582812)
    • (2003) Analytical Chemistry , vol.75 , Issue.10 , pp. 2299-2308
    • Yan, F.1    Subramanian, B.2    Nakeff, A.3    Barder, T.J.4    Parus, S.J.5    Lubman, D.M.6
  • 26
    • 33344470911 scopus 로고    scopus 로고
    • Purification and characterization of AKR1B10 from human liver: Role in carbonyl reduction of xenobiotics
    • DOI 10.1124/dmd.105.007971
    • H.J.O. Martin, U. Breyer-Pfaff, V. Wsol, S. Venz, S. Block, and E. Maser Purification and characterization of AKR1B10 from human liver: role in carbonyl reduction of xenobiotics Drug Metab. Dispos. 34 2006 464 470 (Pubitemid 43290905)
    • (2006) Drug Metabolism and Disposition , vol.34 , Issue.3 , pp. 464-470
    • Martin, H.-J.1    Breyer-Pfaff, U.2    Wsol, V.3    Venz, S.4    Block, S.5    Maser, E.6
  • 27
    • 34247606449 scopus 로고    scopus 로고
    • Purification and characterization of β-glucosidase from Melanocarpus sp. MTCC 3922
    • DOI 10.2225/vol10-issue2-fulltext-4
    • J. Kaur, B.S. Chadha, B.A. Kumar, G.S. Kaur, and H.S. Saini Purification and characterization of β-glucosidase from Melanocarpus sp MTCC 3922 Electron. J. Biotechnol. 10 2007 260 270 (Pubitemid 46684772)
    • (2007) Electronic Journal of Biotechnology , vol.10 , Issue.2 , pp. 260-270
    • Kaur, J.1    Chadha, B.S.2    Kumar, B.A.3    Kaur, G.S.4    Saini, H.S.5
  • 28
    • 0036829782 scopus 로고    scopus 로고
    • Gradient chromatofocusing. Versatile pH gradient separation of proteins in ion-exchange HPLC: Characterization studies
    • DOI 10.1021/ac020169q
    • L. Shan, and D.J. Anderson Gradient chromatofocusing: versatile pH gradient separation of proteins in ion-exchange HPLC - characterization studies Anal. Chem. 74 2002 5641 5649 (Pubitemid 35253131)
    • (2002) Analytical Chemistry , vol.74 , Issue.21 , pp. 5641-5649
    • Shan, L.1    Anderson, D.J.2
  • 29
    • 0030805979 scopus 로고    scopus 로고
    • Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12
    • DOI 10.1002/elps.1150180807
    • A.J. Link, K. Robison, and G.M. Church Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12 Electrophoresis 18 1997 1259 1313 (Pubitemid 27371433)
    • (1997) Electrophoresis , vol.18 , Issue.8 , pp. 1259-1313
    • Link, A.J.1    Robison, K.2    Church, G.M.3
  • 30
    • 0033849339 scopus 로고    scopus 로고
    • Towards higher resolution: Two-dimensional electrophoresis of saccharomyces cerevisiae proteins using overlapping narrow immobilized pH gradients
    • DOI 10.1002/1522-2683(20000701)21:13<2610::AID-ELPS2610>3.0.CO;2-H
    • R. Wildgruber, A. Harder, C. Obermaier, G. Boguth, W. Weiss, S.J. Fey, P.M. Larsen, and A. Gorg Towards higher resolution: two-dimensional electrophoresis of Saccharomyces cerevisiae proteins using overlapping narrow immobilized pH gradients Electrophoresis 21 2000 2610 2616 (Pubitemid 30646295)
    • (2000) Electrophoresis , vol.21 , Issue.13 , pp. 2610-2616
    • Wildgruber, R.1    Harder, A.2    Obermaier, C.3    Boguth, G.4    Weiss, W.5    Fey, S.J.6    Larsen, P.M.7    Gorg, A.8
  • 31
    • 0035987524 scopus 로고    scopus 로고
    • Web-based two-dimensional database of Saccharomyces cerevisiae proteins using immobilized pH gradients from pH 6 to pH 12 and matrix-assisted laser desorption/ionization-time of flight mass spectrometry
    • DOI 10.1002/1615-9861(200206)2:6<727::AID-PROT727>3.0.CO;2-2
    • R. Wildgruber, G. Reil, O. Drews, H. Parlar, and A. Gorg Web-based two-dimensional database of Saccharomyces cerevisiae proteins using immobilized pH gradients from pH 6 to pH 12 and matrix-assisted laser desorption/ionization- time of flight mass spectrometry Proteomics 2 2002 727 732 (Pubitemid 34693574)
    • (2002) Proteomics , vol.2 , Issue.6 , pp. 727-732
    • Wildgruber, R.1    Reil, G.2    Drews, O.3    Parlar, H.4    Gorg, A.5
  • 33
    • 33645094371 scopus 로고    scopus 로고
    • The cassava (Manihot esculenta Crantz) root proteome: Protein identification and differential expression
    • J. Sheffield, N. Taylor, C. Fauquet, and S.X. Chen The cassava (Manihot esculenta Crantz) root proteome: protein identification and differential expression Proteomics 6 2006 1588 1598
    • (2006) Proteomics , vol.6 , pp. 1588-1598
    • Sheffield, J.1    Taylor, N.2    Fauquet, C.3    Chen, S.X.4
  • 34
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • DOI 10.1021/ac025747h
    • A. Keller, A.I. Nesvizhskii, E. Kolker, and R. Aebersold Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 74 2002 5383 5392 (Pubitemid 35215372)
    • (2002) Analytical Chemistry , vol.74 , Issue.20 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 35
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • DOI 10.1021/ac0341261
    • A.I. Nesvizhskii, A. Keller, E. Kolker, and R. Aebersold A statistical model for identifying proteins by tandem mass spectrometry Anal. Chem. 75 2003 4646 4658 (Pubitemid 37082259)
    • (2003) Analytical Chemistry , vol.75 , Issue.17 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 36
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins
    • - [37] C-C. Wu
    • P.H. O'Farrell High resolution two-dimensional electrophoresis of proteins J. Biol. Chem. 250 1975 4007 4021
    • (1975) J. Biol. Chem. , vol.250 , pp. 4007-4021
    • O'Farrell, P.H.1
  • 37
  • 38
  • 39
    • 39049141776 scopus 로고    scopus 로고
    • The adenocarcinoma-associated antigen, AGR2, promotes tumor growth, cell migration, and cellular transformation
    • DOI 10.1158/0008-5472.CAN-07-2930
    • Z. Wang, Y. Hao, and A.W. Lowe The adenocarcinoma-associated antigen, AGR2, promotes tumor growth, cell migration, and cellular transformation Cancer Res. 68 2008 492 497 (Pubitemid 351380076)
    • (2008) Cancer Research , vol.68 , Issue.2 , pp. 492-497
    • Wang, Z.1    Hao, Y.2    Lowe, A.W.3
  • 41
    • 0013817205 scopus 로고
    • Reactions of cyanate with functional groups of proteins. 4: Inertness of aliphatic hydroxyl groups - Formation of carbamyl- and acylhydantoins
    • G.R. Stark Reactions of cyanate with functional groups of proteins. 4: Inertness of aliphatic hydroxyl groups - formation of carbamyl- and acylhydantoins Biochemistry 4 1965 2363 2367
    • (1965) Biochemistry , vol.4 , pp. 2363-2367
    • Stark, G.R.1
  • 42
    • 0013784519 scopus 로고
    • Reactions of cyanate with functional groups of proteins. 3: Reactions with amino and carboxyl groups
    • G.R. Stark Reactions of cyanate with functional groups of proteins. 3: Reactions with amino and carboxyl groups Biochemistry 4 1965 1030 1036
    • (1965) Biochemistry , vol.4 , pp. 1030-1036
    • Stark, G.R.1
  • 43
    • 72149117946 scopus 로고    scopus 로고
    • A centrifugal ultrafiltration strategy for isolating the low-molecular weight (≤25 K) component of human plasma proteome
    • D.W. Greening, and R.J. Simpson A centrifugal ultrafiltration strategy for isolating the low-molecular weight (≤25 K) component of human plasma proteome J. Proteomics 73 2010 637 648
    • (2010) J. Proteomics , vol.73 , pp. 637-648
    • Greening, D.W.1    Simpson, R.J.2
  • 44
    • 0034906359 scopus 로고    scopus 로고
    • Biomarkers for early detection of colon cancer
    • S. Srivastava, M. Verma, and D.E. Henson Biomarkers for early detection of colon cancer Clin. Cancer Res. 7 2001 1118 1126 (Pubitemid 32708660)
    • (2001) Clinical Cancer Research , vol.7 , Issue.5 , pp. 1118-1126
    • Srivastava, S.1    Verma, M.2    Henson, D.E.3
  • 45
    • 34247194882 scopus 로고    scopus 로고
    • Biomarkers for early detection of breast cancer: What, when, and where?
    • DOI 10.1016/j.bbagen.2007.01.017, PII S0304416507000402
    • V.V. Levenson Biomarkers for early detection of breast cancer: what, when, and where? Biochim. Biophys. Acta 1770 2007 847 856 (Pubitemid 46617032)
    • (2007) Biochimica et Biophysica Acta - General Subjects , vol.1770 , Issue.6 , pp. 847-856
    • Levenson, V.V.1


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