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Volumn 12, Issue SUPPL. 1, 2011, Pages

On the pathgroups approach to rapid small phylogeny

Author keywords

[No Author keywords available]

Indexed keywords

ANCESTRAL GENOMES; GREEDY ALGORITHMS; HEURISTIC SOLUTIONS; PRIORITY SCHEMES; RECONSTRUCTION PROBLEMS; RUNTIMES; YEAST GENOME;

EID: 79951521544     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-S1-S4     Document Type: Article
Times cited : (26)

References (14)
  • 2
    • 77954206437 scopus 로고    scopus 로고
    • Pathgroups, a dynamic data structure for genome reconstruction problems
    • 10.1093/bioinformatics/btq255, 20483815
    • Zheng C. Pathgroups, a dynamic data structure for genome reconstruction problems. Bioinformatics 2010, 26:1587-1594. 10.1093/bioinformatics/btq255, 20483815.
    • (2010) Bioinformatics , vol.26 , pp. 1587-1594
    • Zheng, C.1
  • 3
    • 0031721577 scopus 로고    scopus 로고
    • Multiple genome rearrangement and breakpoint phylogeny
    • 10.1089/cmb.1998.5.555, 9773350
    • Sankoff D, Blanchette M. Multiple genome rearrangement and breakpoint phylogeny. J Comput Biol 1998, 5:555-570. 10.1089/cmb.1998.5.555, 9773350.
    • (1998) J Comput Biol , vol.5 , pp. 555-570
    • Sankoff, D.1    Blanchette, M.2
  • 4
    • 0037623969 scopus 로고    scopus 로고
    • The reconstruction of doubled genomes
    • El-Mabrouk N, Sankoff D. The reconstruction of doubled genomes. SIAM J Comput 2003, 32:754-92.
    • (2003) SIAM J Comput , vol.32 , pp. 754-792
    • El-Mabrouk, N.1    Sankoff, D.2
  • 5
    • 60849107596 scopus 로고    scopus 로고
    • Genome aliquoting with double cut and join
    • 10.1186/1471-2105-10-S1-S2, 2648758, 19208119
    • Warren R, Sankoff D. Genome aliquoting with double cut and join. BMC Bioinformatics 2009, 10(Suppl 1):S2. 10.1186/1471-2105-10-S1-S2, 2648758, 19208119.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL 1
    • Warren, R.1    Sankoff, D.2
  • 6
    • 84959064166 scopus 로고    scopus 로고
    • On the practical solution of the reversal median problem
    • Gascuel O, Moret BME
    • Caprara A. On the practical solution of the reversal median problem. Algorithms in Bioinformatics. Proceedings of WABI 2001. LNCS 2001, 2149:238-251. Gascuel O, Moret BME.
    • (2001) Algorithms in Bioinformatics. Proceedings of WABI 2001. LNCS , vol.2149 , pp. 238-251
    • Caprara, A.1
  • 7
    • 0010361780 scopus 로고    scopus 로고
    • Exact algorithms for the reversal median problem
    • U New Mexico
    • Siepel AC. Exact algorithms for the reversal median problem. MSc thesis 2001, U New Mexico.
    • (2001) MSc thesis
    • Siepel, A.C.1
  • 8
    • 65849156401 scopus 로고    scopus 로고
    • Multichromosomal median and halving problems under different genomic distances
    • 10.1186/1471-2105-10-120, 2683817, 19386099
    • Tannier E, et al. Multichromosomal median and halving problems under different genomic distances. BMC Bioinformatics 2009, 10:120. 10.1186/1471-2105-10-120, 2683817, 19386099.
    • (2009) BMC Bioinformatics , vol.10 , pp. 120
    • Tannier, E.1
  • 10
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion, and block interchange
    • 10.1093/bioinformatics/bti535, 15951307
    • Yancopoulos S, et al. Efficient sorting of genomic permutations by translocation, inversion, and block interchange. Bioinformatics 2005, 21:3340-3346. 10.1093/bioinformatics/bti535, 15951307.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1
  • 11
    • 42349094694 scopus 로고    scopus 로고
    • The ABCs of MGR with DCJ
    • 2614205, 19204809
    • Adam Z, Sankoff D. The ABCs of MGR with DCJ. Evol Bioinform Online 2008, 4:69-74. 2614205, 19204809.
    • (2008) Evol Bioinform Online , vol.4 , pp. 69-74
    • Adam, Z.1    Sankoff, D.2
  • 12
    • 84874759067 scopus 로고    scopus 로고
    • DCJ median problems on linear multichromosomal genomes: graph representation and fast exact solutions
    • Ciccarelli FD, Miklos I
    • Xu AW. DCJ median problems on linear multichromosomal genomes: graph representation and fast exact solutions. Comparative Genomics (RECOMB CG). 7th Annual RECOMB Satellite Workshop, LNSC 2009, 5817:7083. Ciccarelli FD, Miklos I., http://sites.google.com/site/andrewweixu/Home/software
    • (2009) Comparative Genomics (RECOMB CG). 7th Annual RECOMB Satellite Workshop, LNSC , vol.5817 , pp. 7083
    • Xu, A.W.1
  • 13
    • 25844471721 scopus 로고    scopus 로고
    • The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species
    • 10.1101/gr.3672305, 1240090, 16169922
    • Byrne KP, Wolfe KH. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 2005, 15:1456-1461. 10.1101/gr.3672305, 1240090, 16169922.
    • (2005) Genome Res , vol.15 , pp. 1456-1461
    • Byrne, K.P.1    Wolfe, K.H.2
  • 14
    • 33747339757 scopus 로고    scopus 로고
    • Resolution of phylogenetic conflict in large data sets by increased taxon sampling
    • 10.1080/10635150600697358, 16861214
    • Hedtke SM, et al. Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Syst Biol 2006, 55:522-529. 10.1080/10635150600697358, 16861214.
    • (2006) Syst Biol , vol.55 , pp. 522-529
    • Hedtke, S.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.