메뉴 건너뛰기




Volumn 26, Issue 13, 2010, Pages 1587-1594

Pathgroups, a dynamic data structure for genome reconstruction problems

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; FUNGAL GENOME; GENE ORDER; GENETICS; METHODOLOGY; PHYLOGENY; SACCHAROMYCES CEREVISIAE; YEAST;

EID: 77954206437     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq255     Document Type: Article
Times cited : (12)

References (31)
  • 3
    • 0036143403 scopus 로고    scopus 로고
    • Genome-scale evolution: Reconstructing gene orders in the ancestral species
    • Bourque, G. and Pevzner, P. (2002) Genome-scale evolution: Reconstructing gene orders in the ancestral species. Genome Res., 12, 26-36.
    • (2002) Genome Res , vol.12 , pp. 26-36
    • Bourque, G.1    Pevzner, P.2
  • 4
    • 25844471721 scopus 로고    scopus 로고
    • The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species
    • Byrne, K.P. and Wolfe, K.H. (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res., 15, 1456-1461.
    • (2005) Genome Res , vol.15 , pp. 1456-1461
    • Byrne, K.P.1    Wolfe, K.H.2
  • 6
    • 37249014401 scopus 로고    scopus 로고
    • Algorithms for the extraction of synteny blocks from comparative maps
    • Giancarlo, R. and Hannenhalli, S. (eds) Springer, Berlin
    • Choi, V. et al. (2007) Algorithms for the extraction of synteny blocks from comparative maps. In Giancarlo, R. and Hannenhalli, S. (eds) Algorithms in Bioinformatics. Proceedings of WABI 2007. Vol. 4645 of Lecture Notes in Computer Science, Springer, Berlin, pp. 277-288.
    • (2007) Algorithms in Bioinformatics. Proceedings of WABI 2007. of Lecture Notes in Computer Science , vol.4645 , pp. 277-288
    • Choi, V.1
  • 7
    • 0037623969 scopus 로고    scopus 로고
    • The reconstruction of doubled genomes
    • El-Mabrouk, N. and Sankoff, D. (2003) The reconstruction of doubled genomes. SIAM J. Comput., 32, 754-92.
    • (2003) SIAM J. Comput. , vol.32 , pp. 754-792
    • El-Mabrouk, N.1    Sankoff, D.2
  • 9
    • 77954188716 scopus 로고    scopus 로고
    • Genome rearrangements analysis under parsimony and other phylogenetic algorithms, Available at, (last accessed date May 28, 2010)
    • Genome rearrangements analysis under parsimony and other phylogenetic algorithms (2004) Available at http://www.cs.unm.edu/~moret/GRAPPA/(last accessed date May 28, 2010).
    • (2004)
  • 10
    • 67149106149 scopus 로고    scopus 로고
    • Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome
    • Gordon, J.L. et al. (2009) Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. PLoS Genet., 5, e1000485.
    • (2009) PLoS Genet , vol.5
    • Gordon, J.L.1
  • 11
    • 84941152013 scopus 로고    scopus 로고
    • To cut ... or not to cut: applications of comparative physical maps in molecular evolution
    • Society for Industrial and Applied Mathematics, Philadlephia
    • Hannenhalli, S. and Pevzner, P.A. (1996) To cut ... or not to cut: applications of comparative physical maps in molecular evolution. In Proceedings of the Seventh Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 96), Society for Industrial and Applied Mathematics, Philadlephia, pp. 304-313.
    • (1996) Proceedings of the Seventh Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 96) , pp. 304-313
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 12
    • 33747339757 scopus 로고    scopus 로고
    • Resolution of phylogenetic conflict in large data sets by increased taxon sampling
    • Hedtke, S.M. et al. (2006) Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Syst. Biol., 55, 522-529.
    • (2006) Syst. Biol. , vol.55 , pp. 522-529
    • Hedtke, S.M.1
  • 15
    • 22744440499 scopus 로고    scopus 로고
    • Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
    • Murphy, W.J. et al. (2005) Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science, 309, 613-617.
    • (2005) Science , vol.309 , pp. 613-617
    • Murphy, W.J.1
  • 17
    • 0031721577 scopus 로고    scopus 로고
    • Multiple genome rearrangement and breakpoint phylogeny
    • Sankoff, D. and Blanchette, M. (1998) Multiple genome rearrangement and breakpoint phylogeny. J. Comput. Biol., 5, 555-570.
    • (1998) J. Comput. Biol. , vol.5 , pp. 555-570
    • Sankoff, D.1    Blanchette, M.2
  • 19
    • 34547844124 scopus 로고    scopus 로고
    • Polyploids, genome halving and phylogeny
    • Sankoff, D. et al. (2007) Polyploids, genome halving and phylogeny. Bioinformatics, 23, i433-i439.
    • (2007) Bioinformatics , vol.23
    • Sankoff, D.1
  • 20
    • 70350536711 scopus 로고    scopus 로고
    • Internal validation of ancestral gene order reconstruction in angiosperm phylogeny
    • Nelson, C.E. and Vialette, S. (eds)
    • Sankoff, D. et al. (2008) Internal validation of ancestral gene order reconstruction in angiosperm phylogeny. In Nelson, C.E. and Vialette, S. (eds) Comparative Genomics (RECOMB CG). Sixth Annual Workshop. Vol. 5267 of Lecture Notes in Computer Science, pp. 252-264.
    • (2008) Comparative Genomics (RECOMB CG). Sixth Annual Workshop. of Lecture Notes in Computer Science , vol.5267 , pp. 252-264
    • Sankoff, D.1
  • 22
    • 60249085527 scopus 로고    scopus 로고
    • Polyploidy and angiosperm diversification
    • Soltis, D.E. et al. (2009) Polyploidy and angiosperm diversification. Am. J. Bot., 96, 336-348.
    • (2009) Am. J. Bot. , vol.96 , pp. 336-348
    • Soltis, D.E.1
  • 24
    • 77958030798 scopus 로고    scopus 로고
    • Yeast ancestral genome reconstructions: the possibilities of computational methods
    • Ciccarelli, F.D. and Miklós, I. (eds) Springer, Berlin
    • Tannier, E. (2009) Yeast ancestral genome reconstructions: the possibilities of computational methods. In Ciccarelli, F.D. and Miklós, I. (eds) Comparative Genomics (RECOMB CG). Seventh Annual Workshop. Vol. 5817 of Lecture Notes in Computer Science, Springer, Berlin, pp. 1-12.
    • (2009) Comparative Genomics (RECOMB CG). Seventh Annual Workshop. of Lecture Notes in Computer Science , vol.5817 , pp. 1-12
    • Tannier, E.1
  • 25
    • 65849156401 scopus 로고    scopus 로고
    • Multichromosomal median and halving problems under different genomic distances
    • Tannier, E. et al. (2009) Multichromosomal median and halving problems under different genomic distances. BMC Bioinformatics, 10, 120.
    • (2009) BMC Bioinformatics , vol.10 , pp. 120
    • Tannier, E.1
  • 26
    • 60849107596 scopus 로고    scopus 로고
    • Genome aliquoting with double cut and join
    • Warren, R. and Sankoff, D. (2009) Genome aliquoting with double cut and join. BMC Bioinformatics, 10 (Suppl. 1), 1-11.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 1 , pp. 1-11
    • Warren, R.1    Sankoff, D.2
  • 27
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion, and block interchange
    • Yancopoulos, S. et al. (2005) Efficient sorting of genomic permutations by translocation, inversion, and block interchange. Bioinformatics, 21, 3340-3346.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1
  • 28
    • 33646508755 scopus 로고    scopus 로고
    • Genome rearrangements with partially ordered chromosomes
    • Zheng, C. and Sankoff, D. (2006) Genome rearrangements with partially ordered chromosomes. J. Comb. Optim., 11, 133-144.
    • (2006) J. Comb. Optim. , vol.11 , pp. 133-144
    • Zheng, C.1    Sankoff, D.2
  • 29
    • 34547846887 scopus 로고    scopus 로고
    • Genome halving with an outgroup
    • Zheng, C. et al. (2006) Genome halving with an outgroup. Evol. Bioinformatics, 2, 319-326.
    • (2006) Evol. Bioinformatics , vol.2 , pp. 319-326
    • Zheng, C.1
  • 30
    • 36248971129 scopus 로고    scopus 로고
    • Removing noise and ambiguities from comparative maps in rearrangement analysis
    • Zheng, C. et al. (2007) Removing noise and ambiguities from comparative maps in rearrangement analysis. Trans. Comput. Biol. Bioinf., 4, 515-522.
    • (2007) Trans. Comput. Biol. Bioinf. , vol.4 , pp. 515-522
    • Zheng, C.1
  • 31
    • 46249099578 scopus 로고    scopus 로고
    • Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes
    • Zheng, C. et al. (2008) Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. Bioinformatics, 24, i96-i104.
    • (2008) Bioinformatics , vol.24
    • Zheng, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.