A new chitinase-like xylanase inhibitor protein (XIP) from coffee (Coffea arabica) affects Soybean Asian rust (Phakopsora pachyrhizi) spore germination

BMC Biotechnology

Volumn 11, Issue , 2011, Pages

  Vasconcelos, Erico A R ^a   Santana, Celso G ^a   Godoy, Claudia V ^b   Seixas, Claudine D S ^b   Silva, Marilia S ^b   Moreira, Leonora R S ^c   Oliveira Neto, Osmundo B ^a   Price, Daniel ^d   Fitches, Elaine ^d   Filho, Edivaldo X F ^c   Mehta, Angela ^a   Gatehouse, John A ^d   Grossi De Sa, Maria F ^a  

^a EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^b EMBRAPA CERRADOS   (Brazil)

^c UNIVERSITY OF BRASILIA   (Brazil)

^d DURHAM UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CLONING; CULTIVATION; DISEASE CONTROL; GENE ENCODING; PLANTS (BOTANY); RECOMBINANT PROTEINS;

ACROPHIALOPHORA NAINIANA; AMINO ACID SEQUENCE; CHITINOLYTIC ACTIVITY; GLUTAMIC ACID RESIDUES; GLYCOSIDE HYDROLASES; PHAKOPSORA PACHYRHIZI; SPORE GERMINATION; XYLANASE INHIBITOR;

COFFEE;

PROTEIN INHIBITOR; UNCLASSIFIED DRUG; XYLANASE INHIBITOR PROTEIN; CHITINASE; VEGETABLE PROTEIN; XYLAN 1,4 BETA XYLOSIDASE;

AMINO ACID SEQUENCE; ARTICLE; ASPERGILLUS NIGER; BRAZIL; COFFEE; ENZYME ACTIVITY; FUNGUS; FUNGUS SPORE; HETEROLOGOUS EXPRESSION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHAKOPSORA PACHYRHIZI; PICHIA PASTORIS; PLANT FUNGUS INTERACTION; PROTEIN PURIFICATION; RUST (PLANT DISEASE); SOYBEAN; SPORE GERMINATION; BASIDIOMYCETES; CHEMISTRY; DRUG ANTAGONISM; DRUG EFFECT; ENZYMOLOGY; GENETICS; GERMINATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; SEQUENCE ALIGNMENT;

ACROPHIALOPHORA NAINIANA; COFFEA ARABICA; GLYCINE MAX; PHAKOPSORA PACHYRHIZI; PICHIA; PICHIA PASTORIS;

AMINO ACID SEQUENCE; BASIDIOMYCOTA; CHITINASE; CLONING, MOLECULAR; COFFEE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GERMINATION; MOLECULAR SEQUENCE ANNOTATION; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; SEQUENCE ALIGNMENT; SOYBEANS; SPORES, FUNGAL; XYLOSIDASES;

EID: 79551635720     PISSN: None     EISSN: 14726750     Source Type: Journal    
DOI: 10.1186/1472-6750-11-14     Document Type: Article

References (33)

1. Sels J, Mathys J, Coninck BMA, Cammue BPA, De Bolle MFC. Plant pathogenesis-related (PR) proteins: A focus on PR peptides. Plant Physiol Biochem 2008, 46:941-950. 10.1016/j.plaphy.2008.06.011, 18674922.
2. Villamil JCM, Van der Hoorn RA. Enzyme-inhibitor interactions at the plant-pathogen interface. Curr Opin Plant Biol 2008, 11:380-388. 10.1016/j.pbi.2008.04.007, 18550418.
3. Payan F, Flatman R, Porciero S, Williamson G, Juge N, Roussel A. Structural analysis of XIP-I, a xylanase proteinaceous inhibitor from wheat. Biochem J 2003, 372:399-405. 10.1042/BJ20021802, 1223415, 12617724.
4. Payan F, Leone P, Furniss C, Tahir TA, Durand A, Porciero S, Manzanares P, Williamson G, Gilbert H, Juge N, Roussel A. The dual nature of the wheat xylanase protein inhibitor XIP-I - structural basis for the inhibition of family 10 and family 11 xylanases. J Biol Chem 2004, 279:36029-36027. 10.1074/jbc.M404225200, 15181003.
5. Neves JS. Influência da aplicação de fosfito de potássio na severidade da ferrugem asiática da soja. 2006, Dissertação de Mestrado (M) - Universidade de Brasília/Faculdade de Agronomia e Medicina Veterinária. Brasília.
6. Brasil. Ministério da Agricultura, Pecuária e Abastecimento Anuário estatístico da agroenergia/Ministério da Agricultura, Pecuária e Abastecimento 2009, 160. Brasília: Mapa/ACS, Brasil. Ministério da Agricultura, Pecuária e Abastecimento.
7. Filipov NM, Lawrence DA. Developmental toxicity of a triazole fungicide: consideration of interorgan communication. Toxicol Sci 2001, 62:185-186. 10.1093/toxsci/62.2.185, 11452129.
8. Whittaker SG, Faustman EM. Effects of benzimidazole analogs on cultures of differentiating rodent embryonic cells. Toxicol Appl Pharmacol 1992, 113:144-151. 10.1016/0041-008X(92)90019-O, 1553749.
9. Vieira LGE, Andrade AC, Colombo CA, Moraes AHA, Mehta A, Oliveira AC, Labate CA, Marino C, Vitorello CBM, Monte DC, Giglioti E, Kimura ET, Romano E, Kuramae EE, Lemos EGM, Almeida ERP, Jorge EC, Albuquerque EVS, Silva FR, Vinecky F, Sawazaki HE, Dorry HFA, Carrer H, Abreu IN, Batista JAN, Teixeira JB, Kitajima JP, Xavier KG, Lima LM, Camargo LEA, Pereira LFP, Coutinho LL, Lemos MVF, Romano MR, Machado MA, Costa MMC, Sá MFG, Goldman MHS, Ferro MIT, Tinoco MLP, Oliveira MC, Sluys MAV, Shimizu MM, Maluf MP, Eira MTS, Filho OG, Arruda P, Mazzafera P, Mariani PDSC, Oliveira RLBC, Harakava R, Balbao SF, Tsai SM, Mauro SMZ, Santos SN, Siqueira WJ, Costa GGL, Formighieri EF, Carazzolle MF, Pereira GAG. Brazilian coffee genome project: an EST-based genomic resource. Braz J Plant Physiol 2006, 18:95-108.
10. Fitches E, Wilkinson H, Bell H, Bown DP, Gatehouse JA, Edwards JP. Cloning, expression and functional characterisation of chitinase from larvae of tomato moth (Lacanobia oleracea): a demonstration of the insecticidal activity of insect chitinase. Insect Biochem Mol Biol 2004, 34:1037-1050. 10.1016/j.ibmb.2004.06.012, 15475298.
11. Scheltinga ACT, Hennig M, Dijkstra BW. The 1.8 Å resolution structure of hevamine, a plant chitinase/lysozyme, and analysis of the conserved sequence and structure motifs of glycosyl hydrolase family 18. J Mol Biol 1996, 262:243-257. 10.1006/jmbi.1996.0510, 8831791.
12. Scheltinga ACT, Armand S, Kalk A, Isogai KH, Henrissat B, Dijkstra BW. Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and X-ray structure of a complex with allosamidin: Evidence for substrate assisted catalysis. Biochemistry 1995, 34:15619-15623. 10.1021/bi00048a003, 7495789.
13. Suzukawa K, Yamagami T, Ohnuma T, Hirakawa H, Kuhara S, Aso Y, Ishiguro M. Mutational analysis of amino acid residues involved in catalytic activity of a family 18 chitinase from Tulip bulbs. Biosci Biotechonol Biochem 2003, 67:341-346.
14. Papanikolau Y, Prag G, Tavlas G, Vorgias CE, Oppenheim AB, Petratos K. High resolution structural analyses of mutant chitinase A complexes with substrates provide new insight into the mechanism of catalysis. Biochemistry 2001, 40:11338-11343. 10.1021/bi010505h, 11560481.
15. Hennig M, Jansonius JN, van Scheltinga ACT, Dijkstra BW, Schlesier B. Crystal structure of Concanavalin B at 1.65 Å resolution. An ''inactivated'' chitinase from seeds of Canavalia ensiformis. J Mol Biol 1995, 254:237-246. 10.1006/jmbi.1995.0614, 7490746.
16. Juge N, Payan F, Williamson G. XIP-I, a xylanase inhibitor protein from wheat: a novel protein function. Biochim Biophys Acta 2004, 1696:203-211.
17. McLauchlan WR, Garcia-Conesa MT, Williamson G, Roza M, Ravestein P, Maat J. A novel class of protein from wheat which inhibits xylanases. Biochem J 1999, 338:441-446. 10.1042/0264-6021:3380441, 1220071, 10024521.
18. Flatman RW, Mclauchlan R, Juge N, Furniss C, Berrin JG, Hughes RK, Manzanares P, Ladbury JE, O'brien R, Williamson G. Interactions defining the specificity between fungal xylanases and the xylanase-inhibiting protein XIP-I from wheat. Biochem J 2002, 365:773-781. 1222710, 11955286.
19. Durand A, Hughes R, Roussel A, Flatman R, Henrissat B, Juge N. Emergence of a subfamily of xylanase inhibitors within glycoside hydrolase family 18. FEBS J 2005, 272:1745-1755. 10.1111/j.1742-4658.2005.04606.x, 15794761.
20. Sunna A, Antranikian G. Xylanolytic enzymes from fungi and bacteria. Crit Rev Biotechnol 1997, 17:39-67. 10.3109/07388559709146606, 9118232.
21. Igawa T, Tokai T, Kudo T, Yamaguchi I, Kimura M. A wheat xylanase inhibitor gene, Xip-I, but not Taxi-I, is significantly induced by biotic and abiotic signals that trigger plant defense. Biosci Biotechnol Biochem 2005, 69:1058-1063. 10.1271/bbb.69.1058, 15914935.
22. Croes E, Gebruers K, Luyten N, Delcour JA, Courtin CM. The three classes of wheat xylanase-inhibiting proteins accumulate in an analogous way during wheat ear development and germination. J Plant Physiol 2009, 166:1253-1262. 10.1016/j.jplph.2009.02.008, 19339078.
23. Takahashi-Ando N, Inaba M, Ohsato S, Igawa T, Usami R, Kimura M. Identification of multiple highly similar XIP-type xylanase inhibitor genes in hexaploid wheat. Biochem Biophys Res Comm 2007, 360:880-884. 10.1016/j.bbrc.2007.06.151, 17631271.
24. Tokunaga T, Esaka M. Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice. Plant Cell Physiol 2007, 48:700-714. 10.1093/pcp/pcm038, 17379695.
25. Abad LR, D'Urzo MP, Liu D, Narasimhan ML, Reuveni M, Zhu JK, Niu X, Singh NK, Hasegawa PM, Bressan RA. Antifungal activity of tobacco osmotin has specificity and involves plasma membrane permeabilization. Plant Science 1996, 118:11-23.
26. Khandke KM, Vithayathil PJ, Murthy SK. Purification of xylanase, β-glucosidase, endocellulase, and exocellulase from a thermophilic fungus, Thermoascus aurantiacus. Arch Biochem Biophys 1989, 274:491-500. 10.1016/0003-9861(89)90462-1, 2508562.
27. Craveiro KIC, Junior JEG, Silva MCM, Macedo LLP, Lucena WA, Silva MS, Junior JDAS, Oliveira GR, Magalhães MTQ, Santiago AD, Grossi-De-Sa MF. Variant Cry1Ia toxins generated by DNA shuffling are active against sugarcane giant borer. J Biotech 2009, 145:215-221.
28. Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685. 10.1038/227680a0, 5432063.
29. Fitches E, Edwards MJ, Mee C, Grishan E, Gatehouse AMR, Edwards JP, Gatehouse JA. Fusion proteins containing neurotoxins as insect control agents: snowdrop lectin delivers fused insecticidal spider venom neurotoxin to insect haemolymph following oral ingestion. J Insect Physiol 2004, 50:61-71. 10.1016/j.jinsphys.2003.09.010, 15037094.
30. Salles BC, Cunha RB, Fontes W, Sousa MV, Filho EXF. Purification and characterization of a new xylanase from Acrophialophora nainiana. J Biotechnol 2000, 81:199-204. 10.1016/S0168-1656(00)00280-7, 10989179.
31. Bailey MJ, Biely P, Poutanen K. Interlaboratory testing of methods for assay of xylanase activity. J Biotechnol 1992, 23:257-270.
32. Clamp M, Cuff J, Searle SM, Barton GJ. The Jalview Java alignment editor. Bioinf 2004, 20:426-427.
33. Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 1993, 26:283-291.