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Volumn 18, Issue 1, 2006, Pages 95-108

Brazilian coffee genome project: An EST-based genomic resource

(60)  Esteves Vieira, Luiz Gonzaga a   Andrade, Alan Carvalho b   Colombo, Carlos Augusto c   De Araújo Moraes, Ana Heloneida b   Metha, Ângela b   De Oliveira, Angélica Carvalho b   Labate, Carlos Alberto d   Marino, Celso Luis e   Monteiro Vitorello, Claúdia De Barros l   Monte, Damares De Castro b   Giglioti, Éder f   Kimura, Edna Teruko d   Romano, Eduardo b   Kuramae, Eiko Eurya e   Macedo Lemos, Eliana Gertrudes e   Pereira De Almeida, Elionor Rita b   Jorge, Érika C d   Albuquerque, Érika V S b   Da Silva, Felipe Rodrigues Da b   Vinecky, Felipe b   more..


Author keywords

cDNA; Coffea; EST; Transcriptome

Indexed keywords

COFFEA; COFFEA ARABICA; COFFEA CANEPHORA; COFFEA RACEMOSA; RUBIACEAE;

EID: 33745381574     PISSN: 16770420     EISSN: 16770420     Source Type: Journal    
DOI: 10.1590/S1677-04202006000100008     Document Type: Short Survey
Times cited : (109)

References (58)
  • 2
    • 33745356392 scopus 로고    scopus 로고
    • Constitutive and inducible promoters from coffee plants. [US Patent N° 6,441,273]
    • Aldwinckle SH, Gaitan AL (2002) Constitutive and inducible promoters from coffee plants. [US Patent N° 6,441,273].
    • (2002)
    • Aldwinckle, S.H.1    Gaitan, A.L.2
  • 3
    • 33745347527 scopus 로고    scopus 로고
    • Constitutive α-tubulin promoter from coffee plants and uses thereof. [US Patent N° 6903247]
    • Aldwinckle SH, Gaitan AL, (2005) Constitutive α-tubulin promoter from coffee plants and uses thereof. [US Patent N° 6903247].
    • (2005)
    • Aldwinckle, S.H.1    Gaitan, A.L.2
  • 4
    • 21744449154 scopus 로고    scopus 로고
    • Inter-simple sequence repeat (ISSR) variation in forest coffee trees (Coffea arabica L.) populations from Ethiopia
    • Aga E, Bekele E, Bryngelsson T (2005) Inter-simple sequence repeat (ISSR) variation in forest coffee trees (Coffea arabica L.) populations from Ethiopia. Genetica 124:213-221.
    • (2005) Genetica , vol.124 , pp. 213-221
    • Aga, E.1    Bekele, E.2    Bryngelsson, T.3
  • 6
    • 33745407201 scopus 로고    scopus 로고
    • Expressão diferencial de proteínas em raízes de Coffea canephora infectadas com o nematóide endoparasita Meloidogyne paranaensis
    • Londrina, Brasil. Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café, CD-ROM
    • Andrade AE, Albuquerque EVS, Grossi de Sá MF, Carneiro RMDG, Metha, A (2005) Expressão diferencial de proteínas em raízes de Coffea canephora infectadas com o nematóide endoparasita Meloidogyne paranaensis. In: Anais do IV Simpósio de Pesquisa dos Cafés do Brasil. Londrina, Brasil. Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café, CD-ROM.
    • (2005) Anais Do IV Simpósio de Pesquisa Dos Cafés Do Brasil
    • Andrade, A.E.1    Albuquerque, E.V.S.2    Grossi De Sá, M.F.3    Carneiro, R.M.D.G.4    Metha, A.5
  • 8
    • 0035739693 scopus 로고    scopus 로고
    • Sugarcane transcriptome: A landmark in plant genomics in the tropics
    • Arruda P (ed), Special volume on Sugarcane Transcriptome
    • Arruda P (2001) Sugarcane transcriptome: a landmark in plant genomics in the tropics. In: Arruda P (ed), Special volume on Sugarcane Transcriptome. Genet. Mol. Biol. 24:1-296.
    • (2001) Genet. Mol. Biol. , vol.24 , pp. 1-296
    • Arruda, P.1
  • 9
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9:208-218.
    • (1991) Plant Mol. Biol. Rep. , vol.9 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 10
    • 0034794016 scopus 로고    scopus 로고
    • Breeding for resistance to Meloidogyne exigua in Coffea arabica by introgression of resistance genes of Coffea canephora
    • Bertrand B, Anthony F, Lashermes P (2001) Breeding for resistance to Meloidogyne exigua in Coffea arabica by introgression of resistance genes of Coffea canephora. Plant Pathol. 50:637-643.
    • (2001) Plant Pathol. , vol.50 , pp. 637-643
    • Bertrand, B.1    Anthony, F.2    Lashermes, P.3
  • 11
    • 33745418476 scopus 로고    scopus 로고
    • Caracterização de genes com expressão tecido específica em raízes e folhas de Coffea arabica
    • Londrina, Brasil,Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café, CD-ROM
    • Brandalise M, Maluf M.P, Guerreiro Filho O,Gonçalves W, Maia IG (2005) Caracterização de genes com expressão tecido específica em raízes e folhas de Coffea arabica. In: Anais do IV Simpósio de Pesquisa dos Cafés do Brasil. Londrina, Brasil,Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café, CD-ROM.
    • (2005) Anais Do IV Simpósio de Pesquisa Dos Cafés Do Brasil
    • Brandalise, M.1    Maluf, M.P.2    Guerreiro Filho, O.3    Gonçalves, W.4    Maia, I.G.5
  • 14
    • 28444494392 scopus 로고    scopus 로고
    • Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts
    • Chenwei, L, Mueller, LA, Mc Carthy, J, Crouzillat, D, Pétiard, V, Tanksley, SD (2005). Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts, Theor. Appl. Genet. 112:114-130.
    • (2005) Theor. Appl. Genet. , vol.112 , pp. 114-130
    • Chenwei, L.1    Mueller, L.A.2    Mc Carthy, J.3    Crouzillat, D.4    Pétiard, V.5    Tanksley, S.D.6
  • 16
    • 0010602459 scopus 로고
    • O melhoramento de plantas no Instituto Agronômico
    • Furlani AMC, Viégas GP (eds), Campinas, Brasil
    • Carvalho A, Fazuoli LC (1993) O melhoramento de plantas no Instituto Agronômico. In: Furlani AMC, Viégas GP (eds), Café. pp.29-76. Campinas, Brasil
    • (1993) Café , pp. 29-76
    • Carvalho, A.1    Fazuoli, L.C.2
  • 17
    • 0000268467 scopus 로고
    • Distribuição geográfica e classificação botânica do gênero Coffea com referência especial à espécie Arabica
    • Carvalho A (1945) Distribuição geográfica e classificação botânica do gênero Coffea com referência especial à espécie Arabica. Bol. Superint. Serv. Café. 21:174-180.
    • (1945) Bol. Superint. Serv. Café , vol.21 , pp. 174-180
    • Carvalho, A.1
  • 18
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. II. Error probabilities
    • Ewing B, Green P (1998) Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res. 8:186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 19
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wend MC, Green P (1998) Basecalling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8:175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wend, M.C.3    Green, P.4
  • 20
    • 33745430030 scopus 로고    scopus 로고
    • Expressão gênica diferencial em frutos de Coffea arabica L. em diferentes estádios de desenvolvimento e maturação
    • Londrina, Brasil, Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café, CD-ROM
    • Gaspari-Pezzopane C, Maluf MP, Pinto FO (2005) Expressão gênica diferencial em frutos de Coffea arabica L. em diferentes estádios de desenvolvimento e maturação. In: Anais do IV Simpósio de Pesquisa dos Cafés do Brasil. Londrina, Brasil, Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café, CD-ROM.
    • (2005) Anais Do IV Simpósio de Pesquisa Dos Cafés Do Brasil
    • Gaspari-Pezzopane, C.1    Maluf, M.P.2    Pinto, F.O.3
  • 22
    • 0343020894 scopus 로고
    • Fontes de resistência ao bicho-mineiro. Perileucoptera coffeella em Coffea sp.
    • Guerreiro Filho O, Medina Filho HP, Carvalho A (1991) Fontes de resistência ao bicho-mineiro. Perileucoptera coffeella em Coffea sp. Bragantia 50:45-55.
    • (1991) Bragantia , vol.50 , pp. 45-55
    • Guerreiro Filho, O.1    Medina Filho, H.P.2    Carvalho, A.3
  • 23
    • 20444449370 scopus 로고    scopus 로고
    • A Systematic Proteomic Study of Seed Filling in Soybean. Establishment of High-Resolution Two-Dimensional Reference Maps, Expression Profiles, and an Interactive Proteome Database
    • Hajduch M, Ganapathy A, Stein JW, Thelen JJ (2005) A Systematic Proteomic Study of Seed Filling in Soybean. Establishment of High-Resolution Two-Dimensional Reference Maps, Expression Profiles, and an Interactive Proteome Database Plant Physiol. 137:1397-1419.
    • (2005) Plant Physiol. , vol.137 , pp. 1397-1419
    • Hajduch, M.1    Ganapathy, A.2    Stein, J.W.3    Thelen, J.J.4
  • 24
    • 0033491733 scopus 로고    scopus 로고
    • Transgenic plants of Coffea canephora from embryogenic callus via Agrobacterium tumefaciens-mediated transformation
    • Hatanaka T, Choi YE, Kusano T, Sano H (1999) Transgenic plants of Coffea canephora from embryogenic callus via Agrobacterium tumefaciens-mediated transformation. Plant Cell Rep. 19:106-110.
    • (1999) Plant Cell Rep. , vol.19 , pp. 106-110
    • Hatanaka, T.1    Choi, Y.E.2    Kusano, T.3    Sano, H.4
  • 25
    • 15444375532 scopus 로고    scopus 로고
    • Factors influencing gene introgression into the allotetraploid Coffea arabica L. from its diploid relatives
    • Herrera JC, Combes MC, Cortina H, Lashermes P (2004) Factors influencing gene introgression into the allotetraploid Coffea arabica L. from its diploid relatives. Genome 47:1053-1060.
    • (2004) Genome , vol.47 , pp. 1053-1060
    • Herrera, J.C.1    Combes, M.C.2    Cortina, H.3    Lashermes, P.4
  • 27
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA assembly program
    • Huang X, Madan A (1999) CAP3: A DNA assembly program. Genome Res. 9:868-877.
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 28
    • 0034951574 scopus 로고    scopus 로고
    • From library screening to microarray technology: Strategies to determine gene expression profiles and to identify differentially regulated genes in plants
    • Khun E (2001) From library screening to microarray technology: Strategies to determine gene expression profiles and to identify differentially regulated genes in plants. Ann. Bot. 87:139-155.
    • (2001) Ann. Bot. , vol.87 , pp. 139-155
    • Khun, E.1
  • 29
    • 12444249697 scopus 로고
    • Taxonomia de Coffea arabica L. Descrição das variedades e formas encontradas no Estado de São Paulo
    • Campinas, Brasil
    • Krug CA, Mendes JET, Carvalho A (1938) Taxonomia de Coffea arabica L. Descrição das variedades e formas encontradas no Estado de São Paulo. Boletim Técnico do Instituto Agronômico. Campinas, Brasil, 62:1-57.
    • (1938) Boletim Técnico Do Instituto Agronômico , vol.62 , pp. 1-57
    • Krug, C.A.1    Mendes, J.E.T.2    Carvalho, A.3
  • 30
    • 0027133876 scopus 로고
    • Use of random amplified DNA markers to analyze genetic variability and relationships of Coffea species
    • Lashermes P, Cros J, Marmey P, Charrier A (1993) Use of random amplified DNA markers to analyze genetic variability and relationships of Coffea species. Genet. Res. Crop Evol. 40:91-99.
    • (1993) Genet. Res. Crop Evol. , vol.40 , pp. 91-99
    • Lashermes, P.1    Cros, J.2    Marmey, P.3    Charrier, A.4
  • 32
    • 0030964346 scopus 로고    scopus 로고
    • Phylogenetic relationships of coffee-tree species (Coffea L.) as inferred from ITS sequences of nuclear ribosomal DNA
    • Lashermes P, Combes MC, Trouslot P, Charrier A (1997) Phylogenetic relationships of coffee-tree species (Coffea L.) as inferred from ITS sequences of nuclear ribosomal DNA. Theor. Appl. Genet. 94:947-955.
    • (1997) Theor. Appl. Genet. , vol.94 , pp. 947-955
    • Lashermes, P.1    Combes, M.C.2    Trouslot, P.3    Charrier, A.4
  • 34
    • 0034022736 scopus 로고    scopus 로고
    • Genetically modified coffee plants expressing the Bacillus thuringiensis cry1Ac gene for resistance to leaf miner
    • Leroy T, Henry AM, Royer M, Altosar I, Frutos R, Duris D, Philippe R (2000) Genetically modified coffee plants expressing the Bacillus thuringiensis cry1Ac gene for resistance to leaf miner. Plant Cell Rep. 19:382-389.
    • (2000) Plant Cell Rep. , vol.19 , pp. 382-389
    • Leroy, T.1    Henry, A.M.2    Royer, M.3    Altosar, I.4    Frutos, R.5    Duris, D.6    Philippe, R.7
  • 36
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart DJ, Winzeler EA (2000) Genomics, gene expression and DNA arrays. Nature, 405:827-836.
    • (2000) Nature , vol.405 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 37
    • 85014434032 scopus 로고    scopus 로고
    • Genetic diversity of cultivated Coffea arabica inbred lines assessed by RAPD, AFLP and SSR marker systems
    • Maluf MP, Silvestrini M, Ruggiero LCM, Guerreiro Filho O, Colombo CA (2005) Genetic diversity of cultivated Coffea arabica inbred lines assessed by RAPD, AFLP and SSR marker systems. Sci. Agric. 62:366-373.
    • (2005) Sci. Agric. , vol.62 , pp. 366-373
    • Maluf, M.P.1    Silvestrini, M.2    Ruggiero, L.C.M.3    Guerreiro Filho, O.4    Colombo, C.A.5
  • 38
    • 0033056544 scopus 로고    scopus 로고
    • Molecular cloning of the complete 11S seed storage protein gene of Coffea arabica and promoter analysis in transgenic tobacco plants
    • Marraccini P, Deshayes A, Petiard V, Rogers WJ (1999) Molecular cloning of the complete 11S seed storage protein gene of Coffea arabica and promoter analysis in transgenic tobacco plants. Plant Physiol. Biochem. 37:273-282.
    • (1999) Plant Physiol. Biochem. , vol.37 , pp. 273-282
    • Marraccini, P.1    Deshayes, A.2    Petiard, V.3    Rogers, W.J.4
  • 40
    • 3142734477 scopus 로고    scopus 로고
    • Construction and characterization of a BAC library for genome analysis of the allotetraploid coffee species (Coffea arabica L.)
    • Noir S, Patheyron S, Combes MC, Lashermes P, Chalhoub B (2004) Construction and characterization of a BAC library for genome analysis of the allotetraploid coffee species (Coffea arabica L.). Theor. Appl. Genet. 109:225-230.
    • (2004) Theor. Appl. Genet. , vol.109 , pp. 225-230
    • Noir, S.1    Patheyron, S.2    Combes, M.C.3    Lashermes, P.4    Chalhoub, B.5
  • 41
  • 42
    • 0033671715 scopus 로고    scopus 로고
    • A transgenic perspective on plant functional genomics
    • Pereira A (2000) A transgenic perspective on plant functional genomics. Transgenic Res. 9:245-260.
    • (2000) Transgenic Res. , vol.9 , pp. 245-260
    • Pereira, A.1
  • 44
    • 0036309554 scopus 로고    scopus 로고
    • AFLP analysis of introgression in coffee cultivars (Coffea arabica L.) derived from a natural interspecific hybrid
    • Prakash NS, Combes MC, Somanna N, Lashermes P (2002) AFLP analysis of introgression in coffee cultivars (Coffea arabica L.) derived from a natural interspecific hybrid. Euphytica 124:265-271.
    • (2002) Euphytica , vol.124 , pp. 265-271
    • Prakash, N.S.1    Combes, M.C.2    Somanna, N.3    Lashermes, P.4
  • 46
    • 23044486656 scopus 로고    scopus 로고
    • Analysis of genetic diversity in Indian robusta coffee genepool (Coffea canephora) in comparison with a representative core collection using SSRs and AFLPs
    • Prakash N, Combes MC, Dussert S, Naveen S, Lashermes P (2005) Analysis of genetic diversity in Indian robusta coffee genepool (Coffea canephora) in comparison with a representative core collection using SSRs and AFLPs. Genet. Resour. Crop Evol. 52:333-343.
    • (2005) Genet. Resour. Crop Evol. , vol.52 , pp. 333-343
    • Prakash, N.1    Combes, M.C.2    Dussert, S.3    Naveen, S.4    Lashermes, P.5
  • 47
  • 48
    • 33745334654 scopus 로고    scopus 로고
    • Production of herbicide-resistant coffee plants (Coffea canephora P.) via Agrobacterium tumefaciens-mediated transformation
    • accepted for publication
    • Ribas, A.F., Kobayashi, A.K., Pereira, L.F.P. and Vieira, L.G.E. (2006). Production of herbicide-resistant coffee plants (Coffea canephora P.) via Agrobacterium tumefaciens-mediated transformation. Brazil. Arch. Biol. Technol. (accepted for publication).
    • (2006) Brazil. Arch. Biol. Technol.
    • Ribas, A.F.1    Kobayashi, A.K.2    Pereira, L.F.P.3    Vieira, L.G.E.4
  • 51
    • 33745393202 scopus 로고    scopus 로고
    • Determinação do Unigene do Projeto Genoma Café
    • Londrina, Brasil Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café. CD-ROM
    • Sales RMOB, Andrade AC, da Silva FR (2005) Determinação do Unigene do Projeto Genoma Café. In: Anais do IV Simpósio de Pesquisa dos Cafés do Brasil. Londrina, Brasil Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café. CD-ROM.
    • (2005) Anais Do IV Simpósio de Pesquisa Dos Cafés Do Brasil
    • Sales, R.M.O.B.1    Andrade, A.C.2    Da Silva, F.R.3
  • 52
    • 23444454652 scopus 로고    scopus 로고
    • Isolation of promoter for N-methyltransferase gene associated with caffeine biosynthesis in Coffea canephora
    • Satyanarayana KV, Kumar V, Chandrashekar A, Ravishankar GA (2005) Isolation of promoter for N-methyltransferase gene associated with caffeine biosynthesis in Coffea canephora. J. Biotech. 119:20-25.
    • (2005) J. Biotech. , vol.119 , pp. 20-25
    • Satyanarayana, K.V.1    Kumar, V.2    Chandrashekar, A.3    Ravishankar, G.A.4
  • 54
    • 0035739429 scopus 로고    scopus 로고
    • Trimming and clustering sugarcane ESTs
    • Telles GP, da Silva FR (2001) Trimming and clustering sugarcane ESTs. Gen. Mol. Biol. 24:17-23.
    • (2001) Gen. Mol. Biol. , vol.24 , pp. 17-23
    • Telles, G.P.1    Da Silva, F.R.2
  • 55
    • 20444472040 scopus 로고    scopus 로고
    • Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation
    • Vincent D, Lapierre C, Pollet B, Cornic G, Negroni L, Zivy M (2005) Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation. Plant Physiol. 137: 949-960.
    • (2005) Plant Physiol. , vol.137 , pp. 949-960
    • Vincent, D.1    Lapierre, C.2    Pollet, B.3    Cornic, G.4    Negroni, L.5    Zivy, M.6
  • 56
    • 33745405303 scopus 로고    scopus 로고
    • Análise in silico de genes potencialmente envolvidos na resposta aos estresses abióticos presentes na base de dados do Genoma Café
    • Londrina, Brasil. Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café. CD-ROM
    • Vinecky F, Brito KM, da Silva FR, Andrade AC (2005) Análise in silico de genes potencialmente envolvidos na resposta aos estresses abióticos presentes na base de dados do Genoma Café. In: Anais do IV Simpósio de Pesquisa dos Cafés do Brasil. Londrina, Brasil. Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café. CD-ROM.
    • (2005) Anais Do IV Simpósio de Pesquisa Dos Cafés Do Brasil
    • Vinecky, F.1    Brito, K.M.2    Da Silva, F.R.3    Andrade, A.C.4
  • 57
    • 0031239046 scopus 로고    scopus 로고
    • Large-scale EST sequencing in rice
    • Yamamoto K, Sasaki TL (1997). Large-scale EST sequencing in rice. Plant Mol. Biol. 35:135-144.
    • (1997) Plant Mol. Biol. , vol.35 , pp. 135-144
    • Yamamoto, K.1    Sasaki, T.L.2
  • 58
    • 0030753285 scopus 로고    scopus 로고
    • A comparison of expressed sequence tags (ESTs) to human genomic sequences
    • Wolfsberg TG, Landsman D (1997) A comparison of expressed sequence tags (ESTs) to human genomic sequences. Nucleic Acids Res. 25:1626-1632.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1626-1632
    • Wolfsberg, T.G.1    Landsman, D.2


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