Characterization of Pectobacterium species from Iran using biochemical and molecular methods

European Journal of Plant Pathology

Volumn 129, Issue 3, 2011, Pages 413-425

  Baghaee Ravari, Sareh ^a   Rahimian, Heshmat ^b   Shams Bakhsh, Masoud ^a   Lopez Solanilla, Emilia ^c   Antúnez Lamas, María ^c   Rodríguez Palenzuela, Pablo ^c  

^a TARBIAT MODARES UNIVERSITY   (Iran)

^b University of Agriculture and Natural Resources   (Iran)

^c UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

Author keywords

Housekeeping genes; Ornamental plants; Pectobacterium strains; Plant disease; Potato; Soft rot

Indexed keywords

BACTERIAL DISEASE; BIOASSAY; BIOCHEMICAL COMPOSITION; LESION; MOLECULAR ANALYSIS; ORNAMENTAL SPECIES; PHYLOGENETICS; PHYSIOLOGY; POLYMERASE CHAIN REACTION; POLYMORPHISM; POTATO;

IRAN;

BACTERIA (MICROORGANISMS); NICOTIANA TABACUM; PECTOBACTERIUM; PECTOBACTERIUM CAROTOVORUM; PECTOBACTERIUM CAROTOVORUM SUBSP. CAROTOVORUM; PECTOBACTERIUM WASABIAE; PODOPHYLLUM; SCHLUMBERGERA BRIDGESII; SOLANUM TUBEROSUM; SYNGONIUM PODOPHYLLUM;

EID: 79551608889     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10658-010-9704-z     Document Type: Article

References (34)

1. Alippi, A. M., & Lopez, A. C. (2009). First Report of Pectobacterium carotovorum subsp. carotovorum on Spathiphyllum wallisii in Argentina. Plant Disease, 93, 842.
2. Ayers, S. H., Rupp, P., & Johnson, W. T. (1919). A study of the alkali-forming bacteria in milk. United States Department of Agriculture Bulletin, 782, 1-39.
3. Boyraz, N., Bastas, K. K., Maden, S., & Yasar, A. (2006). Bacterial leaf and peduncle soft rot caused by Pectobacterium carotovorum on Tulips in Konya, Turkey. Phytoparasitica, 34, 272-280.
4. Chao, Y. C., Feng, C. T., & Ho, W. C. (2006). First report of Aglaonema bacterial blight caused by Erwinia chrysanthemi in Taiwan. Plant Disease, 90, 1358.
5. Darrasse, A., Priou, S., Kotoujansky, A., & Bertheau, Y. (1994). PCR and restriction fragment length polymorphism of a pel gene as a tool to identify Erwinia carotovora in relation to potato diseases. Applied and Environmental Microbiology, 60, 1437-1443.
6. De Boer, S. H., & Ward, L. J. (1995). PCR detection of Erwinia carotovora subsp. atroseptica associated with potato tissue. Phytopathology, 85, 854-858.
7. Dickey, R. S., & Kelman, A. (1988). Erwinia "Carotovora" or soft rot group. In N. W. Schaad (Ed.), Laboratory guide for identifcation of plant pathogenic bacteria, 2nd edn, (pp. 44-46). St Paul, MN: American Phytopathological Society.
8. Duarte, V., De Boer, S. H., Ward, L. J., & de Oliveira, A. M. R. (2004). Characterization of atypical Erwinia carotovora strains causing blackleg of potato in Brazil. Journal of Applied Microbiology, 96, 535-545. doi: 10. 1111/j. 1365-2672. 2004. 02173. x.
9. Firoz, R., Bahar, M., & Sarif-Nabi, B. (2007). Detection of casual agents of potato soft rot and blackleg in Esfehan province. Iranian Journal of Plant Pathology, 43, 145-162.
10. Gallois, A., Samson, R., Ageron, E., & Grimont, P. A. D. (1992). Erwinia carotovora subsp. odorifera subsp. nov. associated with odorous soft rot of chicory. International Journal of Systematic Bacteriology, 42, 582-588.
11. Gardan, L., Gouy, C., Christen, R., & Samson, R. (2003). Elevation of three subsp. of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov. International Journal of Systematic and Evolutionary Microbiology, 53, 381-391. doi: 10. 1099/ijs. 0. 02423-0.
12. Glasner, J. D., Marquez-Villavicencio, M., Kim, H. S., Jahn, C. E., Ma, B., Biehl, B. S., et al. (2008). Niche-specificity and the variable fraction of the Pectobacterium pangenome. Molecular Plant Microbe Interactions, 21, 1549-1560.
13. Hall, T. A. (1999). BoiEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucl. Acids. Symp. Ser. 41, 95-98.
14. Hauben, L., Moore, E. R., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., et al. (1998). Phylogenetic position of phytopathogens within the Enterobacteriaceae. Systematic and Applied Microbiology, 21, 384-397.
15. Hélias, V., Le Roux, A. C., Bertheau, Y., Andrivon, D., Gauthie, J. P., & Jouan, B. (1998). Characterisation of Erwinia carotovora subspecies and detection of Erwinia carotovora subsp. atroseptica in potato plants, soil and water extracts with PCR-based methods. European Journal of Plant Pathology, 104, 685-699.
16. Hugh, R., & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram-negative bacteria. Journal of Bacteriology, 66, 24-26.
17. Kang, H. W., Kwon, S. W., & Go, S. J. (2003). PCR-based specific and sensitive detection of Pectobacterium carotovorum subsp. carotovorum by primers generated from a URP-PCR fingerprinting-derived polymorphic band. Plant Pathology, 52, 127-133.
18. Khalemlou, E. (2007). Determination of the taxonomic status of common and atypical isolates of Pectobacteria from several hosts in the Mazandaran, Iran, Dissertation, university of Tarbiat Modares, Tehran, Iran.
19. Kim, S. G., & Kim, Y. H. (2007). First report on bacterial soft rot of graft-cactus Chamaecereus silvestrii caused by Pectobacterium carotovorum subsp. carotovorum in Korea. Plant Pathology, 23, 314-317.
20. Kim, H. S., Ma, B., Perna, N. T., & Charkowski, A. O. (2009). Phylogeny and virulence of naturally occurring type III secretion system-deficient Pectobacterium strains. Applied and Environmental Microbiology, 75, 4539-4549.
21. Kwon, S. W., Go, S. J., Kang, H. W., Ryu, J. C., & Jo, J. K. (1997). Phylogenetic analysis of erwinia species based on 16S rRNA gene sequences. International Journal of Systematic Bacteriology, 47, 1061-1067.
22. Ma, B., Hibbing, M. E., Kim, H. S., Reedy, R. M., Yedidia, I., Breuer, J., et al. (2007). Host range and molecular phylogenies of the soft rot enterobacterial genera Pectobacterium and Dickeya. Phytopathology, 97, 1150-1163. doi: 10. 1094/PHYTO-97-9-1150.
23. Perombelon, M. C. M., & Hyman, L. J. (1986). A rapid method for identifying and quantifying soft rot erwinias directly from plant material based on their temperature tolerance and sensitivity to erythromycin. Journal of Applied Bacteriology, 60, 61-66.
24. Perombelon, M. C. M., & van der Wolf, J. M. (2002). Methods for the detection and quantification of Erwinia carotovora subsp. atroseptica (Pectobacterium carotovorum subsp. atrosepticum) on potatoes: a laboratory manual. Dundee, Scotland: Scottish Crop Research Institute Occasional Publication No. 10.
25. Pitman, A. R., Wright, P. J., Gailbraith, M. D., & Harrow, S. A. (2008). Biochemical and genetic diversity of pectolytic enterobacteria causing soft rot disease of potatoes in New Zealand. Australasian Plant Pathology, 37, 559-568.
26. Pitman, A. R., Harrow, S. A., & Visnovsky, S. B. (2009). Genetic characterisation of Pectobacterium wasabiae causing soft rot disease of potato in New Zealand. European Journal of Plant Pathology, 126, 423-435. doi: 10. 1007/s10658-009-9551-y.
27. Schaad, N. W., Jones, J. B., & Chun, W. (2001). Laboratory guide for identification of plant pathogenic bacteria (3rd ed.). The American Phytopathological Society, St. Paul, Minn: APS.
28. Soltani Nejad, S., Taghavi, M., Hayati, J., & Mostofi Zadeh-Ghalamfarsa, R. (2005). Study of phenotypic and pathogenicity characteristics of Pectobacterium causing soft rot in Khozestan province. Iranian Journal of Plant Pathology, 41, 585-611.
29. Tamura, K., Dudley, J., Nei, M., & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Molecular Biology and Evolution, 24, 1596-1599. doi: 10. 1093/molbev/msm092.
30. Thompson, J. D., Gibson, T. J., Plewniak, F., & Higgins, D. G. (1997). The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
31. Toth, I. K., Avrova, A. O., & Hyman, L. J. (2001). Rapid identification and differentiation of the soft rot erwinias by 16S-23S intergenic transcribed spacer-PCR and restriction fragment length polymorphism analyses. Applied and Environmental Microbiology, 67, 4070-4076. doi: 10. 1128/AEM. 67. 9. 4070-4076.
32. van der Merwe, J. J., Coutinho, T. A., Korsten, L., & van der Waals, E. (2010). Pectobacterium carotovorum subsp. brasiliensis causing blackleg on potatoes in South Africa. European Journal of Plant Pathology, 126, 175-185. doi: 10. 1007/s10658-009-9531-2.
33. Yap, M. N., Barak, J. D., & Charkowski, A. O. (2004). Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence. Applied and Environmental Microbiology, 70, 3013-3023. doi: 10. 1128/AEM. 70. 5. 3013-3023.
34. Zohor Paralak, E., Rahimian, H., & Banihashemi, Z. (2007). A comparative study of pectolytic Erwinia isolated from potato in the Fars province. Iranian Journal of Plant Pathology, 43, 121-144.