-
1
-
-
67849092453
-
UniPrime2: a web service providing easier Universal Primer design
-
Boutros,R. et al. (2009) UniPrime2: a web service providing easier Universal Primer design. Nucleic Acids Res., 37, W209-W213.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Boutros, R.1
-
3
-
-
0027745555
-
Specificity, efficiency, and fidelity of PCR
-
Cha,R.S. and Thilly,W.G. (1993) Specificity, efficiency, and fidelity of PCR. PCR Methods Appl., 3, S18-S29.
-
(1993)
PCR Methods Appl.
, vol.3
-
-
Cha, R.S.1
Thilly, W.G.2
-
4
-
-
67849128701
-
primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies
-
Contreras-Moreira,B. et al. (2009) primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies. Nucleic Acids Res., 37, W95-W100.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Contreras-Moreira, B.1
-
5
-
-
0032226106
-
Effects of branch length errors on the performance of phylogenetically independent contrasts
-
Díaz-Uriarte,R. and Garland,T. (1998) Effects of branch length errors on the performance of phylogenetically independent contrasts. Syst. Biol., 47, 654-672.
-
(1998)
Syst. Biol.
, vol.47
, pp. 654-672
-
-
Díaz-Uriarte, R.1
Garland, T.2
-
6
-
-
75249091585
-
Ancestors 1.0: a web server for ancestral sequence reconstruction
-
Diallo,A.B. et al. (2010) Ancestors 1.0: a web server for ancestral sequence reconstruction. Bioinformatics, 26, 130-131.
-
(2010)
Bioinformatics
, vol.26
, pp. 130-131
-
-
Diallo, A.B.1
-
7
-
-
34250305146
-
Identification and analysis of functional elements in 1human genome by the ENCODE pilot project
-
ENCODE Project Consortium
-
ENCODE Project Consortium (2007) Identification and analysis of functional elements in 1human genome by the ENCODE pilot project. Nature, 447, 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
8
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein,J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17, 368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
9
-
-
84987049379
-
Efficient algorithms for inferring evolutionary trees
-
Gusfield,D. (1991) Efficient algorithms for inferring evolutionary trees. Networks, 21, 19-28.
-
(1991)
Networks
, vol.21
, pp. 19-28
-
-
Gusfield, D.1
-
10
-
-
0022376704
-
Dating the human-ape split by a molecular clock of mitochondrial DNA
-
Hasegawa,M. et al. (1985) Dating the human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol., 22, 160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
-
11
-
-
33845898161
-
Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments
-
Jabado,O.J. et al. (2006) Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments. Nucleic Acids Res., 34, 6605-6611.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 6605-6611
-
-
Jabado, O.J.1
-
12
-
-
0041853625
-
MATCH: a tool for searching transcription factor binding sites in DNA sequences
-
Kel,A. et al. (2003) MATCH: a tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res., 31, 3576-3579.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3576-3579
-
-
Kel, A.1
-
13
-
-
24044515895
-
Thermodynamic properties of DNA sequences: characteristic values for the human genome
-
Koehler,R.T. and Peyret,N. (2005) Thermodynamic properties of DNA sequences: characteristic values for the human genome. Bioinformatics, 21, 3333-3339.
-
(2005)
Bioinformatics
, vol.21
, pp. 3333-3339
-
-
Koehler, R.T.1
Peyret, N.2
-
14
-
-
0025305576
-
Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies
-
Kwok,S. et al. (1990) Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Res., 18, 999-1005.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 999-1005
-
-
Kwok, S.1
-
15
-
-
33644876458
-
TreeFam: a curated database of phylogenetic trees of animal gene families
-
Li,H. et al. (2006) TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res., 34, D572-D580.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Li, H.1
-
16
-
-
0031569391
-
PRIMO: a primer design program that applies base quality statistics for automated large-scale DNA sequencing
-
Li,P. et al. (1997) PRIMO: a primer design program that applies base quality statistics for automated large-scale DNA sequencing. Genomics, 40, 476-485.
-
(1997)
Genomics
, vol.40
, pp. 476-485
-
-
Li, P.1
-
18
-
-
84871257810
-
Maximum likelihood estimation of weight matrices for targeted homology search
-
Grosse,I. et al. (eds), Gesellschaft für Informatik
-
Menzel,P. et al. (2009) Maximum likelihood estimation of weight matrices for targeted homology search. In Grosse,I. et al. (eds) Lecture Notes in Informatics: Proceedings of the German Conference on Bioinformatics 2009, Gesellschaft für Informatik, pp. 212-220.
-
(2009)
Lecture Notes in Informatics: Proceedings of the German Conference on Bioinformatics 2009
, pp. 212-220
-
-
Menzel, P.1
-
19
-
-
33645702761
-
fragrep: efficient search for fragmented patterns in genomic sequences
-
Mosig,A. et al. (2006) fragrep: efficient search for fragmented patterns in genomic sequences. Genome Prot. Bioinform., 4, 56-60.
-
(2006)
Genome Prot. Bioinform.
, vol.4
, pp. 56-60
-
-
Mosig, A.1
-
20
-
-
0036140076
-
MELTING, computing the melting temperature of nucleic acid duplex
-
Novère,N.L. (2001) MELTING, computing the melting temperature of nucleic acid duplex. Bioinformatics, 17, 1226-1227.
-
(2001)
Bioinformatics
, vol.17
, pp. 1226-1227
-
-
Novère, N.L.1
-
21
-
-
55549095155
-
Genome-wide nucleotide-level mammalian ancestor reconstruction
-
Paten,B. et al. (2008) Genome-wide nucleotide-level mammalian ancestor reconstruction. Genome Res., 18, 1829-1843.
-
(2008)
Genome Res.
, vol.18
, pp. 1829-1843
-
-
Paten, B.1
-
22
-
-
0038729534
-
The small-world dynamics of tree networks and data mining in phyloinformatics
-
Piel,W.H. et al. (2003) The small-world dynamics of tree networks and data mining in phyloinformatics. Bioinformatics, 19, 1162-1168.
-
(2003)
Bioinformatics
, vol.19
, pp. 1162-1168
-
-
Piel, W.H.1
-
23
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price,M.N. et al. (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One, 5, e9490.
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
-
24
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen,S. and Skaletsky,H. (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol., 132, 365-386.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
25
-
-
0025008168
-
Sequence logos: a new way to display concensus sequences
-
Schneider,T.D. and Stephens,R.M. (1990) Sequence logos: a new way to display concensus sequences. Nucleic Acids Res., 18, 6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
26
-
-
1942531303
-
Resurrecting ancient genes: experimental analysis of extinct molecules
-
Thornton,J.W. (2004) Resurrecting ancient genes: experimental analysis of extinct molecules. Nat. Rev. Genet., 5, 366-375.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 366-375
-
-
Thornton, J.W.1
-
27
-
-
33745590704
-
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
-
Torarinsson,E. et al. (2006) Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure. Genome Res., 16, 885-889.
-
(2006)
Genome Res.
, vol.16
, pp. 885-889
-
-
Torarinsson, E.1
-
28
-
-
39049142999
-
Comparative genomics beyond sequence based alignments: RNA structures in the ENCODE regions
-
Torarinsson,E. et al. (2008) Comparative genomics beyond sequence based alignments: RNA structures in the ENCODE regions. Genome Res., 18, 242-251.
-
(2008)
Genome Res.
, vol.18
, pp. 242-251
-
-
Torarinsson, E.1
-
29
-
-
77953763243
-
Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships
-
Townsend,J.P. and Lopez-Giraldez,F. (2010) Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships. Syst. Biol., 59, 446-457.
-
(2010)
Syst. Biol.
, vol.59
, pp. 446-457
-
-
Townsend, J.P.1
Lopez-Giraldez, F.2
-
30
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang,Z. (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol., 24, 1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
31
-
-
0642309746
-
GapCoder automates the use of indel characters in phylogenetic analysis
-
Young,N.D. and Healy,J. (2003) GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics, 4, 6.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 6
-
-
Young, N.D.1
Healy, J.2
-
32
-
-
0031025677
-
Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods
-
Zhang,J. and Nei,M. (1997) Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. J. Mol. Evol., 44, S139-S146.
-
(1997)
J. Mol. Evol.
, vol.44
-
-
Zhang, J.1
Nei, M.2
|