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Volumn 44, Issue SUPPL. 1, 1997, Pages

Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods

Author keywords

Ancestral protein sequences; Distance method; Likelihood method; Parsimony method

Indexed keywords

ACCURACY; AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; ARTICLE; COMPUTER SIMULATION; EVOLUTION; PHYLOGENY; PROTEIN ANALYSIS;

EID: 0031025677     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00000067     Document Type: Article
Times cited : (207)

References (27)
  • 1
    • 0029039263 scopus 로고
    • Improved dating of the human/ chimpanzee separation in the mitochondrial DNA tree: Heterogeneity among amino acid sites
    • Adachi J, Hasegawa M (1995) Improved dating of the human/ chimpanzee separation in the mitochondrial DNA tree: heterogeneity among amino acid sites. J Mol Evol 40:622-628
    • (1995) J Mol Evol , vol.40 , pp. 622-628
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0028172520 scopus 로고
    • Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene
    • Cao Y, Aadachi J, Janke A, Pääbo S, Hasegawa M (1994) Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene. J Mol Evol 39:519-527
    • (1994) J Mol Evol , vol.39 , pp. 519-527
    • Cao, Y.1    Aadachi, J.2    Janke, A.3    Pääbo, S.4    Hasegawa, M.5
  • 4
    • 12044252488 scopus 로고
    • Compositional bias, character-state bias, and character-state reconstruction using parsimony
    • Collins TM, Wimberger PH, Naylor GJP (1994) Compositional bias, character-state bias, and character-state reconstruction using parsimony. Syst Biol 43:482-496
    • (1994) Syst Biol , vol.43 , pp. 482-496
    • Collins, T.M.1    Wimberger, P.H.2    Naylor, G.J.P.3
  • 5
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • Dayhoff MO (ed) National Biomedical Research Foundation, Washington, DC
    • Dayhoff MO, Schwartz RM, Orcutt BC (1978) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of protein sequence and structure, vol 5, suppl 3. National Biomedical Research Foundation, Washington, DC, pp 345-352
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.3 SUPPL. , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 7
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 9
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 10
    • 0002329356 scopus 로고
    • Minimum evolution fits to a given tree
    • Hartigan JA (1973) Minimum evolution fits to a given tree. Biometrics 29:53-65
    • (1973) Biometrics , vol.29 , pp. 53-65
    • Hartigan, J.A.1
  • 11
    • 0028895702 scopus 로고
    • Reconstructing the evolutionary history of the artiodactyl ribonuclease superfamily
    • Jermann T, Opitz JG, Stackhouse J, Benner SA (1995) Reconstructing the evolutionary history of the artiodactyl ribonuclease superfamily. Nature 374:57-59
    • (1995) Nature , vol.374 , pp. 57-59
    • Jermann, T.1    Opitz, J.G.2    Stackhouse, J.3    Benner, S.A.4
  • 12
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275-282
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 13
    • 0029881442 scopus 로고    scopus 로고
    • Probabilistic reconstruction of ancestral protein sequences
    • Koshi JM, Goldstein RA (1996) Probabilistic reconstruction of ancestral protein sequences. J Mol Evol 42:313-320
    • (1996) J Mol Evol , vol.42 , pp. 313-320
    • Koshi, J.M.1    Goldstein, R.A.2
  • 16
    • 0028900746 scopus 로고
    • Positive selection is a general phenomenon in the evolution of abalone sperm lysin
    • Lee Y-H, Ota T, Vacquier VD (1995) Positive selection is a general phenomenon in the evolution of abalone sperm lysin. Mol Biol Evol 12:231-238
    • (1995) Mol Biol Evol , vol.12 , pp. 231-238
    • Lee, Y.-H.1    Ota, T.2    Vacquier, V.D.3
  • 17
    • 0028229606 scopus 로고
    • Reconstruction of ancestral sequences by the inferential method, a tool of protein engineering studies
    • Libertini G, Di Donato A (1994) Reconstruction of ancestral sequences by the inferential method, a tool of protein engineering studies. J Mol Evol 39:219-229
    • (1994) J Mol Evol , vol.39 , pp. 219-229
    • Libertini, G.1    Di Donato, A.2
  • 18
    • 0029468058 scopus 로고
    • Calculating the probability distributions of ancestral states reconstructed by parsimony on phylogenetic trees
    • Maddison WP (1995) Calculating the probability distributions of ancestral states reconstructed by parsimony on phylogenetic trees. Syst Biol 44:474-481
    • (1995) Syst Biol , vol.44 , pp. 474-481
    • Maddison, W.P.1
  • 20
    • 0028338820 scopus 로고
    • Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites
    • Ota T, Nei M (1994) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. J Mol Evol 38:642-643
    • (1994) J Mol Evol , vol.38 , pp. 642-643
    • Ota, T.1    Nei, M.2
  • 21
    • 0027185401 scopus 로고
    • Theoretical foundation of the minimum-evolution method of phylogenetic inference
    • Rzhetsky A, Nei M (1993) Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol Biol Evol 10: 1073-1095
    • (1993) Mol Biol Evol , vol.10 , pp. 1073-1095
    • Rzhetsky, A.1    Nei, M.2
  • 22
    • 0028813932 scopus 로고
    • Tests of applicability of several substitution models for DNA sequence data
    • Rzhetsky A, Nei M (1995) Tests of applicability of several substitution models for DNA sequence data. Mol Biol Evol 12:131-151
    • (1995) Mol Biol Evol , vol.12 , pp. 131-151
    • Rzhetsky, A.1    Nei, M.2
  • 23
    • 0023375195 scopus 로고
    • The neighbor joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 24
    • 0029149610 scopus 로고
    • Uncertainty in ancient phylogenies
    • Schluter D (1995) Uncertainty in ancient phylogenies. Nature 377:108-109
    • (1995) Nature , vol.377 , pp. 108-109
    • Schluter, D.1
  • 25
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang Z (1994) Estimating the pattern of nucleotide substitution. J Mol Evol 39:105-111
    • (1994) J Mol Evol , vol.39 , pp. 105-111
    • Yang, Z.1
  • 27
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Yang Z, Kumar S, Nei M (1995) A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-1650
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.