메뉴 건너뛰기




Volumn 30, Issue 11, 2010, Pages 1456-1468

Proteomic analysis of membrane preparations from developing Pinus radiata compression wood

Author keywords

HPLC tandem mass spectrometry; membrane fractionation; protein identification; spectral counting; wood development

Indexed keywords

VEGETABLE PROTEIN;

EID: 79551538251     PISSN: 0829318X     EISSN: 17584469     Source Type: Journal    
DOI: 10.1093/treephys/tpq084     Document Type: Article
Times cited : (25)

References (50)
  • 1
    • 11144265587 scopus 로고    scopus 로고
    • Colocalization of L-phenylalanine ammonia-lyase and cinnamate 4-hydroxylase for metabolic channeling in phenylpropanoid biosynthesis
    • Achnine, L., E. B. Blancaflor, S. Rasmussen and R. A. Dixon. 2004. Colocalization of L-phenylalanine ammonia-lyase and cinnamate 4-hydroxylase for metabolic channeling in phenylpropanoid biosynthesis. Plant Cell. 16:3098-3109.
    • (2004) Plant Cell. , vol.16 , pp. 3098-3109
    • Achnine, L.1    Blancaflor, E.B.2    Rasmussen, S.3    Dixon, R.A.4
  • 2
    • 0003503331 scopus 로고
    • Acid-insoluble lignin in wood and pulp
    • Anonymous. TAPPI Press, Atlanta
    • Anonymous. 1991. Acid-insoluble lignin in wood and pulp. In TAPPI Useful Methods. TAPPI Press, Atlanta, pp 47-48.
    • (1991) TAPPI Useful Methods , pp. 47-48
  • 3
    • 84890414049 scopus 로고    scopus 로고
    • Acid-insoluble lignin in wood and pulp
    • Anonymous. TAPPI Press, Atlanta
    • Anonymous. 1996. Acid-insoluble lignin in wood and pulp. In TAPPI Test Methods (1996-1997). TAPPI Press, Atlanta.
    • (1996) TAPPI Test Methods (1996-1997)
  • 4
    • 0019887744 scopus 로고
    • Phase separation of integral membrane proteins in Triton X-114 solution
    • Bordier, C. 1981. Phase separation of integral membrane proteins in Triton X-114 solution. J. Biol. Chem. 256:1604-1607.
    • (1981) J. Biol. Chem. , vol.256 , pp. 1604-1607
    • Bordier, C.1
  • 5
    • 1942454805 scopus 로고    scopus 로고
    • An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein
    • Busov, V. B., E. Johannes, R. W. Whetten, R. R. Sederoff, S. L. Spiker and C. Lanz-Garcia and B. Goldfarb. 2004. An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein. Planta 218:916-927.
    • (2004) Planta , vol.218 , pp. 916-927
    • Busov, V.B.1    Johannes, E.2    Whetten, R.W.3    Sederoff, R.R.4    Spiker, S.L.5    Lanz-Garcia, C.6    Goldfarb, B.7
  • 6
    • 33645302617 scopus 로고    scopus 로고
    • Up-regulation of sucrose synthase and UDP-glucose pyrophosphorylase impacts plant growth and metabolism
    • Coleman, H. D., D. D. Ellis, M. Gilbert and S. D. Mansfield. 2005. Up-regulation of sucrose synthase and UDP-glucose pyrophosphorylase impacts plant growth and metabolism. Plant Biotechnol. J. 4:87-101.
    • (2005) Plant Biotechnol. J. , vol.4 , pp. 87-101
    • Coleman, H.D.1    Ellis, D.D.2    Gilbert, M.3    Mansfield, S.D.4
  • 8
    • 0033314060 scopus 로고    scopus 로고
    • Modelling Pinus radiata lumber characteristics. Part 1: Mechanical properties of small clears
    • Cown, D. J., J. Hebert and R. Ball. 1999. Modelling Pinus radiata lumber characteristics. Part 1: mechanical properties of small clears. N. Z. J. Forestry Sci. 29:203-213.
    • (1999) N. Z. J. Forestry Sci. , vol.29 , pp. 203-213
    • Cown, D.J.1    Hebert, J.2    Ball, R.3
  • 9
    • 33947660917 scopus 로고    scopus 로고
    • An overview of the biology of reaction wood formation
    • Du, S. and F. Yamamoto. 2007. An overview of the biology of reaction wood formation. J. Int. Plant Biol. 49:131-143.
    • (2007) J. Int. Plant Biol. , vol.49 , pp. 131-143
    • Du, S.1    Yamamoto, F.2
  • 11
    • 84934442742 scopus 로고    scopus 로고
    • Subcellular fractionation and proteomics of nuclear envelopes
    • Eds. D. Pflieger and J. Rossier. Humana Press, Totowa, NJ, USA
    • Florens, L., N. Korfali and E. C. Schirmer 2008. Subcellular fractionation and proteomics of nuclear envelopes. In Organelle Proteomics. Eds. D. Pflieger and J. Rossier. Humana Press, Totowa, NJ, USA, pp. 117-137.
    • (2008) Organelle Proteomics , pp. 117-137
    • Florens, L.1    Korfali, N.2    Schirmer, E.C.3
  • 13
    • 1642352535 scopus 로고    scopus 로고
    • Subcellular localization and topology of β (1, 4) galactosyltransferase that elongates β (1, 4) galactan side chains in rhamnogalacturonan I in potato
    • Geshi, N., B. Jørgensen and P. Ulvskov. 2004. Subcellular localization and topology of β (1, 4) galactosyltransferase that elongates β (1, 4) galactan side chains in rhamnogalacturonan I in potato. Planta 218:862-868.
    • (2004) Planta , vol.218 , pp. 862-868
    • Geshi, N.1    Jørgensen, B.2    Ulvskov, P.3
  • 14
    • 33845500104 scopus 로고    scopus 로고
    • Quantitative proteomics analysis of the secretory pathway
    • Gilchrist, A., C. E. Au, J. Hiding et al. 2006. Quantitative proteomics analysis of the secretory pathway. Cell 127:1265-1281.
    • (2006) Cell. , vol.127 , pp. 1265-1281
    • Gilchrist, A.1    Au, C.E.2    Hiding, J.3
  • 15
    • 17144366792 scopus 로고    scopus 로고
    • The proteome of maritime pine wood forming tissue
    • Gion, J.-M., C. Lalanne, G. Le Provost et al. 2005. The proteome of maritime pine wood forming tissue. Proteomics 5:3731-3751.
    • (2005) Proteomics , vol.5 , pp. 3731-3751
    • Gion, J.-M.1    Lalanne, C.2    Le Provost, G.3
  • 16
    • 0029381444 scopus 로고
    • Auxin regulated gene expression and gravitropism in plants
    • Guilfoyle, T. J. 1995. Auxin regulated gene expression and gravitropism in plants. ASGSB Bull. 8:39-45.
    • (1995) ASGSB Bull. , vol.8 , pp. 39-45
    • Guilfoyle, T.J.1
  • 17
    • 33748163170 scopus 로고    scopus 로고
    • Protein transport in the plant secretory pathway
    • Hanton, S. L. and F. Brandizzi. 2006. Protein transport in the plant secretory pathway. Can. J. Bot. 84:523-530.
    • (2006) Can. J. Bot. , vol.84 , pp. 523-530
    • Hanton, S.L.1    Brandizzi, F.2
  • 19
    • 33746996014 scopus 로고    scopus 로고
    • Primary and secondary plant cell walls: A comparative overview
    • Harris, P. J. C. 2006. Primary and secondary plant cell walls: a comparative overview. N. Z. J. Forestry Sci. 36:36-53.
    • (2006) N. Z. J. Forestry Sci. , vol.36 , pp. 36-53
    • Harris, P.J.C.1
  • 20
    • 0038364020 scopus 로고    scopus 로고
    • Organelle proteomics: Implications for subcellular fractionation in proteomics
    • Huber, L. A., K. Pfaller and I. Vietor. 2003. Organelle proteomics: implications for subcellular fractionation in proteomics. Circ. Res. 92:962-968.
    • (2003) Circ. Res. , vol.92 , pp. 962-968
    • Huber, L.A.1    Pfaller, K.2    Vietor, I.3
  • 21
    • 71249083138 scopus 로고    scopus 로고
    • Chloroplast proteomics and the compartmentation of plastidial isoprenoid biosynthetic pathways
    • Joyard, J., M. Ferro, C. Masselon, D. Seigneurin-Berny, D. Salvi, J. Garin and N. Rolland. 2009. Chloroplast proteomics and the compartmentation of plastidial isoprenoid biosynthetic pathways. Mol. Plant. 2:1154-1180.
    • (2009) Mol. Plant , vol.2 , pp. 1154-1180
    • Joyard, J.1    Ferro, M.2    Masselon, C.3    Seigneurin-Berny, D.4    Salvi, D.5    Garin, J.6    Rolland, N.7
  • 23
    • 0029920981 scopus 로고    scopus 로고
    • The genomic and physical organization of Ty1-copia-like sequences as a component of large genomes in Pinus elliottii var.elliottii and other gymnosperms
    • Kamm, A., R. L. Doudrick, J. S. Heslop-Harrison and T. Schmidt 1996. The genomic and physical organization of Ty1-copia-like sequences as a component of large genomes in Pinus elliottii var.elliottii and other gymnosperms. Proc. Natl Acad. Sci. USA 93:2708-2713.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 2708-2713
    • Kamm, A.1    Doudrick, R.L.2    Heslop-Harrison, J.S.3    Schmidt, T.4
  • 25
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A., A. I. Nesvizhskii, E. Kolker and R. Aebersold. 2002. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74:5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 26
    • 60549112895 scopus 로고    scopus 로고
    • Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D
    • Li, X., H. Wu, S. Dillon and S. Southerton. 2009. Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don. BMC Genomics 10:41.
    • (2009) Don. BMC Genomics , vol.10 , pp. 41
    • Li, X.1    Wu, H.2    Dillon, S.3    Southerton, S.4
  • 27
    • 57149104110 scopus 로고    scopus 로고
    • The role of Rab GTPases in cell wall metabolism
    • Lycett, G. 2008. The role of Rab GTPases in cell wall metabolism. J. Exp. Bot. 59:4061-4074.
    • (2008) J. Exp. Bot. , vol.59 , pp. 4061-4074
    • Lycett, G.1
  • 29
    • 66649102414 scopus 로고    scopus 로고
    • Exploring the ultrastructural localisation and biosynthesis of β (1,4)-galactan in Pinus radiata compression wood
    • Mast, S., L. Donaldson, K. Torr, L. Phillips, H. Flint, M. West, T. J. Strabala and A. Wagner. 2009. Exploring the ultrastructural localisation and biosynthesis of β (1,4)-galactan in Pinus radiata compression wood. Plant Physiol. 150:573-583.
    • (2009) Plant Physiol. , vol.150 , pp. 573-583
    • Mast, S.1    Donaldson, L.2    Torr, K.3    Phillips, L.4    Flint, H.5    West, M.6    Strabala, T.J.7    Wagner, A.8
  • 31
    • 0345366898 scopus 로고
    • Light-independent and tissue-specific accumulation of light-harvesting chlorophyll a/b binding protein and ribulose bisphosphate carboxylase in dark-grown pine seedlings
    • Mukai, Y., N. Yamamoto and T. Koshiba. 1991. Light-independent and tissue-specific accumulation of light-harvesting chlorophyll a/b binding protein and ribulose bisphosphate carboxylase in dark-grown pine seedlings. Plant Cell Physiol. 32:1303-1306.
    • (1991) Plant Cell. Physiol. , vol.32 , pp. 1303-1306
    • Mukai, Y.1    Yamamoto, N.2    Koshiba, T.3
  • 32
    • 67650331113 scopus 로고    scopus 로고
    • Quantitative chemical indicators to assess the gradation of compression wood
    • Nanayakkara, B., M. Manley-Harris, I. D. Suckling and L. A. Donaldson. 2009. Quantitative chemical indicators to assess the gradation of compression wood. Holzforschung 63:431-439.
    • (2009) Holzforschung , vol.63 , pp. 431-439
    • Nanayakkara, B.1    Manley-Harris, M.2    Suckling, I.D.3    Donaldson, L.A.4
  • 33
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A. I., A. Keller, E. Kolker and R. Aebersold. 2003. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75:4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 34
    • 76649093600 scopus 로고    scopus 로고
    • Proteomics of plasma membranes from poplar trees reveals tissue distribution of transporters, receptors, and proteins in cell wall formation
    • Nilsson, R., K. Bernfur, N. Gustavsson, J. Bygdell, G. Wingsle and C. Larsson. 2010. Proteomics of plasma membranes from poplar trees reveals tissue distribution of transporters, receptors, and proteins in cell wall formation. Mol. Cell. Proteomics 9:368-387.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 368-387
    • Nilsson, R.1    Bernfur, K.2    Gustavsson, N.3    Bygdell, J.4    Wingsle, G.5    Larsson, C.6
  • 36
    • 0026394075 scopus 로고
    • Wood sugar analysis by anion chromatography
    • Pettersen, R. C. 1991. Wood sugar analysis by anion chromatography. J. Wood Chem. Technol. 11:495-501.
    • (1991) J. Wood Chem. Technol. , vol.11 , pp. 495-501
    • Pettersen, R.C.1
  • 37
    • 0033939986 scopus 로고    scopus 로고
    • Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster Ait.)
    • Plomion, C., C. Pionneau, J. Brach, P. Costa and H. Bailleres. 2000. Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster Ait.). Plant Physiol. 123:959-970.
    • (2000) Plant Physiol. , vol.123 , pp. 959-970
    • Plomion, C.1    Pionneau, C.2    Brach, J.3    Costa, P.4    Bailleres, H.5
  • 38
    • 0034441830 scopus 로고    scopus 로고
    • Cementing the wall: Cell wall polysaccharide synthesising enzymes
    • Reid, J. S. G. 2000. Cementing the wall: cell wall polysaccharide synthesising enzymes. Curr. Opin. Plant Biol. 3:512-516.
    • (2000) Curr. Opin. Plant Biol. , vol.3 , pp. 512-516
    • Reid, J.S.G.1
  • 39
    • 0033815820 scopus 로고    scopus 로고
    • Oxidase activity in lignifying xylem of a taxonomically diverse range of trees: Identification of a conifer laccase
    • Richardson, A., J. Duncan and G. J. McDougall. 2000. Oxidase activity in lignifying xylem of a taxonomically diverse range of trees: identification of a conifer laccase. Tree Physiol. 20:1039-1047.
    • (2000) Tree Physiol. , vol.20 , pp. 1039-1047
    • Richardson, A.1    Duncan, J.2    McDougall, G.J.3
  • 40
  • 42
    • 23644448098 scopus 로고    scopus 로고
    • Cellulose biosynthesis: Current views and evolving concepts
    • Saxena, I. M. and R. M. Brown Jr. 2005. Cellulose biosynthesis: current views and evolving concepts. Ann. Bot. 96:9-21.
    • (2005) Ann. Bot. , vol.96 , pp. 9-21
    • Saxena, I.M.1    Brown Jr., R.M.2
  • 43
    • 0034835140 scopus 로고    scopus 로고
    • The catalytic site of the pectin biosynthetic enzyme α-1, 4-galacturonosyltransferase is located in the lumen of the Golgi
    • Sterling, J. D., H. F. Quigley, A. Orellana and D. Mohnen. 2001. The catalytic site of the pectin biosynthetic enzyme α-1, 4- galacturonosyltransferase is located in the lumen of the Golgi. Plant Physiol. 127:360-371.
    • (2001) Plant Physiol. , vol.127 , pp. 360-371
    • Sterling, J.D.1    Quigley, H.F.2    Orellana, A.3    Mohnen, D.4
  • 44
    • 13844271053 scopus 로고    scopus 로고
    • Expressed sequence tag databases from forestry tree species
    • Eds. S. Kumar and M. Fladung. Haworth Press, Binghamton, NY, USA
    • Strabala, T. J. 2004. Expressed sequence tag databases from forestry tree species. In Molecular Genetics and Breeding of Forest Trees. Eds. S. Kumar and M. Fladung. Haworth Press, Binghamton, NY, USA, pp. 19-52.
    • (2004) Molecular Genetics and Breeding of Forest Trees , pp. 19-52
    • Strabala, T.J.1
  • 45
    • 0004225172 scopus 로고
    • Bibliography, historical background, determination, structure, chemistry, topochemistry, physical properties, origin and formation of compression wood
    • Ed. T. E. Timell. Springer, New York
    • Timell, T. E. 1986. Bibliography, historical background, determination, structure, chemistry, topochemistry, physical properties, origin and formation of compression wood. In Compression Wood in Gymnosperms. Ed. T. E. Timell. Springer, New York.
    • (1986) Compression Wood in Gymnosperms
    • Timell, T.E.1
  • 46
    • 0031954925 scopus 로고    scopus 로고
    • Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
    • Wallin, E. and G. V. Heijne. 1998. Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci. 7:1029-1038.
    • (1998) Protein Sci. , vol.7 , pp. 1029-1038
    • Wallin, E.1    Heijne, G.V.2
  • 47
    • 0032695916 scopus 로고    scopus 로고
    • Evidence for enzyme complexes in the phenylpropanoid and flavonoid pathways
    • Winkel-Shirley, B. 1999. Evidence for enzyme complexes in the phenylpropanoid and flavonoid pathways. Physiol. Plant 107:142-149.
    • (1999) Physiol. Plant , vol.107 , pp. 142-149
    • Winkel-Shirley, B.1
  • 48
    • 63749126117 scopus 로고    scopus 로고
    • Relationship between development of compression wood and gene expression
    • Yamashita, S., M. Yoshida and H. Yamamoto. 2009. Relationship between development of compression wood and gene expression. Plant Sci. 176:729-735.
    • (2009) Plant Sci. , vol.176 , pp. 729-735
    • Yamashita, S.1    Yoshida, M.2    Yamamoto, H.3
  • 49
    • 14644440553 scopus 로고    scopus 로고
    • Biological ontologies in rice databases: An introduction to the activities in Gramene and Oryzabase
    • Yamazaki, Y. and P. Jaiswal. 2005. Biological ontologies in rice databases: an introduction to the activities in Gramene and Oryzabase. Plant Cell Physiol. 46:63-68.
    • (2005) Plant Cell. Physiol. , vol.46 , pp. 63-68
    • Yamazaki, Y.1    Jaiswal, P.2
  • 50
    • 31144458149 scopus 로고    scopus 로고
    • Morphological and chemical variations between juvenile wood, mature wood, and compression wood of loblolly pine (Pinus taeda L.)
    • DOI 10.1515/HF.2006.001
    • Yeh, T.-F., J. L. Braun, B. Goldfarb, H.-M. Chang and J. F. Kadla. 2006. Morphological and chemical variations between juvenile wood, mature wood, and compression wood of loblolly pine (Pinus taeda L.). Holzforschung 60:1-8. (Pubitemid 43130124)
    • (2006) Holzforschung , vol.60 , Issue.1 , pp. 1-8
    • Yeh, T.-F.1    Braun, J.L.2    Goldfarb, B.3    Chang, H.-M.4    Kadla, J.F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.