An auxin-inducible gene from loblolly pine (Pinus taeda L.) is differentially expressed in mature and juvenile-phase shoots and encodes a putative transmembrane protein

Planta

Volumn 218, Issue 6, 2004, Pages 916-927

  Busov, Victor B ^a,b   Johannes, Eva ^a   Whetten, Ross W ^a   Sederoff, Ronald R ^a   Spiker, Steven L ^a   Lanz Garcia, Carmen ^a   Goldfarb, Barry ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b OREGON STATE UNIVERSITY   (United States)

Author keywords

Adventitious root formation; Auxin; Gene expression (5NG4); Maturation; Nodulin; Pinus

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; GENES; PHYSIOLOGY; PROTEINS;

BIOCHEMICAL FUNCTION; HOMOLOGY;

PLANTS (BOTANY);

INDOLEACETIC ACID DERIVATIVE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; DOWN REGULATION; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LOBLOLLY PINE; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; PLANT; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ARABIDOPSIS; DOWN-REGULATION; GENE EXPRESSION REGULATION, PLANT; INDOLEACETIC ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PINUS TAEDA; PLANT PROTEINS; PLANT SHOOTS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

ARABIDOPSIS; ARABIDOPSIS THALIANA; MEDICAGO; MEDICAGO TRUNCATULA; ORYZA SATIVA; PINUS TAEDA;

EID: 1942454805     PISSN: 00320935     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00425-003-1175-4     Document Type: Article

References (55)

1. Abel S, Theologis A (1996) Early genes and auxin action. Plant Physiol 111:9-17
2. Allona S, Quinn M, Shoop E, Swope K, Cyr SS, Carlis J, Riedl J, Retzel E, Campbell MM, Sederoff RR, Whetten RW (1998) Analysis of xylem formation in pine by cDNA sequencing. Proc Natl Acad Sci USA 95:9693-9698
3. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
4. Aubert D, Chen L, Moon YH, Martin DL, Castle LA, Yang C, Sung ZR (2001) EMF1, a novel protein involved in the control of shoot architecture and flowering in Arabidopsis. Plant Cell 13:1865-1875
5. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1995) Current protocols in molecular biology. Wiley, New York
6. + channels KAT1 and KAT2 by dominant negative mutations in the KAT1 α-subunit. J Membr Biol 167:119-125
7. Bancroft I (2000) Insights into the structural and functional evolution of plant genomes afforded by the nucleotide sequences of chromosome 2 and 4 of Arabidopsis thaliana. Yeast 17:1-5
8. Batoko H, Zheng H, Hawes C, Moore I (2000) A rab 1 GTPase is required for transport between the endoplasmic reticulum and Golgi apparatus and for normal Golgi movement in plants. Plant Cell 12:2201-2217
9. Bennett MJ, Marchant A, Green HG, May ST, Ward SP, Millner PA, Walker AR, Schullz B, Feldmann KA (1996) Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science 273:948-950
10. Berardini TZ, Bollman K, Sun H, Poethig RS (2001) Regulation of vegetative phase change in Arabidopsis thaliana by cyclophilin 40. Science 291:2405-2407
11. Blakesley D (1994) Auxin metabolism and adventitious root initiation. In: Davis TD, Haissig BE (eds) Biology of adventitious root formation. Plenum, New York, pp 143-154
12. Blanc G, Barakat A, Guyot R, Cooke R, Delseny M (2000) Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12:1093-1101
13. Blazquez MA, Soowal LN, Lee I, Weigel D (1997) LEAFY expression and flower initiation in Arabidopsis. Development 124:3835-3844
14. Busov VB (2001) Auxin-induced gene expression in loblolly pine. PhD dissertation, North Carolina State University, Raleigh, p 190
15. Chang S, Puryear S, Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 11:113-116
16. Chen L, Cheng J, Castle L, Sung, ZR (1997) The EMF gene regulates Arabidopsis inflorescence development. Plant Cell 9:2011-2024
17. Chen R, Hilson P, Sedbrook J, Rosen E, Caspar T, Masson, PH (1998) The Arabidopsis thaliana AGRAVITROPIC1 gene encodes a component of the polar-auxin-transport efflux carrier. Proc Natl Acad Sci USA 95:15112-15117
18. Cheng J, Seeley KA, Sung, ZR (1995) RML1 and RML2, Arabidopsis genes required for cell proliferation at the root tip. Plant Cell 9:2011-2024
19. Ciavatta VT, Morillon R, Pullman GS, Chrispeels MJ, Cairney J (2001) An aquaglyceroporin is abundantly expressed early in the development of the suspensor and the embryo proper of loblolly pine. Plant Physiol 127:1556-1567
20. Davies PJ (1995) The plant hormones: their nature, occurrence, and functions. In: Davies PJ (ed) Plant hormones: physiology, biochemistry and molecular biology. Kluwer, Dordrecht, pp 1-12
21. De Billy F, Grosjean C, May S, Bennett MJ, Cullimore JV (2001) Expression studies on AUX1-like genes in Medicago truncatula suggest that auxin is required at two steps in early nodule development. Mol Plant Microbe Interact 14:267-277
22. Delrot S, Atanassova R, Maurousset L (2000) Regulation of sugar, amino acid and peptide plant membrane transporters. Biochim Biophys Acta 1465:281-306
23. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395
24. Diaz-Sala C, Hutchison KW, Goldfarb B, Greenwood MS (1996) Maturation-related loss in rooting competence by loblolly pine stem cuttings: the role of auxin transport, metabolism and tissue sensitivity. Physiol Plant 97:481-490
25. Durbin ML, McGaig B, Clegg MT (2000) Molecular evolution of chalcone synthase multigene family in the morning glory genome. Plant Mol Biol 42:79-92
26. Erik LL, von Heijne SG, Krogh A (1998) A hidden Markov model for predicting transmembrane helices in protein sequences. In: Glasgow J, Littlejohn T, Major F, Lathrop R, Sankoff D, Sensen C (eds) Proceedings of the sixth international conference on intelligent systems for molecular biology. AAAI Press, Menlo Park, CA, pp 175-182
27. Galweiler L, Guan C, Muller A, Wisman E, Mendgen K, Yephremov A, Palme K (1998) Regulation of auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282:2226-2230
28. Gamas P, Niebel FC, Lescure N, Cullimore JV (1996) Use of subtractive hybridization approach to identify new Medicago truncatula genes induced during root nodule development. Mol Plant Microbe Interact 9:233-242
29. Goldfarb B, Lanz-Garcia C, Lian Z, Whetten R (2003) Aux/IAA gene family is conserved in the gymnosperm, loblolly pine (Pinus taeda L.). Tree Physiol 23:1181-1192
30. Greenwood MS, Hutchison KW (1993) Maturation as a developmental process. In: Ahuja M, Libby W (eds) Clonal forestry I. Springer, Berlin Heidelberg New York, pp 277
31. Gualtieri G, Bisseling T (2000) The evolution of nodulation. Plant Mol Biol 42:181-194
32. Hackett WP (1988) Donor plant maturation and adventitious root formation In: Davis TD, Hassig BE, Sankhla N (eds) Advances in plant sciences series. Adventitious root formation in cuttings. Dioscorides, Portland, OR, pp 11-28
33. Haffner V, Enjarlic F, Lardet L, Carron MP (1991) Maturation in woody plants: a review of metabolic and genomic aspects. Ann Sci For 48:615-630
34. Handa M, Guidotti G (1996) Purification and cloning of a soluble ATP-diphosphohydrolase (apyrase) from potato tubers (Solanum tuberosum). Biochem Biophys Res Commun 218: 916-923
35. Haseloff J, Siemering KR, Prasher DC, Hodge S (1997) Removal of cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proc Natl Acad Sci USA 94:2122-2127
36. Hutchison KW, Sherman CD, Weber J, Smith SS, Singer PB, Greenwood MS (1990) Maturation in larch II: Effects of age on photosynthesis and gene expression in developing foliage. Plant Physiol 94:1308-1315
37. Isacoff EY, Jan YN, Jan LY (1990) Evidence for formation of heteromultimeric potassium channels in Xenopus oocytes. Nature 345:530-534
38. Jimenez-Zurdo JI, Frugier F, Crespi MD, Kondorosi A (2000) Expression profiles of 22 novel molecular markers for organogenic pathways acting in alfalfa nodule development. Mol Plant Microbe Interact 13:96-106
39. Jorgensen JE, Gronlund M, Pallisgaard N, Larsen K, Marcker KA, Jensen EO (1999) A new class of plant homeobox genes is expressed in specific regions of determinate symbiotic root nodules. Plant Mol Biol 40:65-77
40. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
41. Laplaze L, Ribeiro A, Franche C, Duhoux E, Auguy F, Bogusz D, Pawlowski K (2000) Characterization of a Casuarina glauca nodule-specific subtilisin-like protease gene, a homolog of Alnus glutinosa ag12. Mol Plant Microbe Interact 13:113-117
42. Luschnig C, Gaxiola RA, Grisafi P, Fink GR (1998) EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana. Genes Dev 12:2175-2187
43. Mathesius U (2001) Flavonoids induced in cells undergoing nodule organogenesis in white clover are regulators of auxin breakdown by peroxidase. J Exp Bot 52:419-426
44. Mathesius U, Schlaman HRM, Spanik HP, Sautter C, Djordjevic MA (1998) Auxin transport inhibition precedes root nodule formation in white clover roots and is regulated by flavonoids and derivatives of chitinoligosaccharides. Plant J 14:23-24
45. Murray JR, Hackett WP (1991) Dihydroflavonol reductase activity in relation to differential anthocyanin accumulation in juvenile and mature phase Hedera helix L. Plant Physiol 97:343-351
46. Murthy R, Goldfarb B (2001) Effect of handling and water stress on water status and rooting of loblolly pine stem cuttings. New For 21:217-230
47. Neuteboom LW, Ng JM, Kuyper M, Clijdesdale OR, Hooykaas PJ, van der Zaal BJ (1999) Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation. Plant Mol Biol 39:273-278
48. Poethig RS (1990) Phase change and the regulation of shoot morphogenesis in plants. Science 250:923-930
49. Reidy B, McQueen-Mason S, Nosberger J, Fleming A (2001) Differential expression of alpha-and beta-expansin genes in the elongating leaf of Festuca pratensis. Plant Mol Biol 46:491-504
50. Ribeiro A, Akkermans ADL, van Kammen A, Bisseling T, Pawlowski K (1995) A nodule-specific gene encoding a subtilisin-like protease is expressed in early stages of actinorhizal nodule development. Plant Cell 7:785-794
51. Schneider A, Walker SA, Poyser S, Sagan M, Ellis TH, Downie JA (1999) Genetic mapping and functional analysis of a nodulation-defective mutant (sym19) of pea (Pisum sativum L). Mol Gen Genet 262:1-11
52. Smith DL, Fedoroff NV (1995) LRP1, a gene expressed in lateral and adventitious root primordia of Arabidopsis. Plant Cell 7:735-745
53. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
54. Woo H, Hackett WP, Das A (1994) Differential expression of chlorophyll a/b binding protein gene in juvenile and mature phase English ivy (Hedera helix) Physiol Plant 92:69-78
55. Wopereis J, Pajuelo E, Dazzo FB, Jiang Q, Gresshoff PM, Bruijn FJD, Stougaard J, Szczyglowski K (2000) Short root mutant of Lotus japonicus with a dramatically altered symbiotic phenotype. Plant J 23:97-114