An HcpR homologue from Desulfovibrio desulfuricans and its possible role in nitrate reduction and nitrosative stress

Biochemical Society Transactions

Volumn 39, Issue 1, 2011, Pages 224-229

  Cadby, Ian T ^a   Busby, Steve J W ^a   Cole, Jeffrey A ^a  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

cAMP receptor protein (CRP); Desulfovibrio; Nitrate reduction; Nitrate reduction in the periplasm (nap); Regulator of Hcp transcription (HcpR)

Indexed keywords

CYCLIC AMP BINDING PROTEIN; NITRATE; RNA POLYMERASE;

BINDING SITE; CONFERENCE PAPER; DESULFOVIBRIO DESULFURICANS; NITROSATIVE STRESS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; RNA TRANSCRIPTION; SULFATE REDUCING BACTERIUM; TRANSCRIPTION REGULATION;

BACTERIAL PROTEINS; BASE SEQUENCE; DESULFOVIBRIO DESULFURICANS; MOLECULAR SEQUENCE DATA; NITRATES; OXIDATION-REDUCTION; PROMOTER REGIONS, GENETIC; REACTIVE NITROGEN SPECIES; STRESS, PHYSIOLOGICAL;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO; DESULFOVIBRIO DESULFURICANS; ESCHERICHIA COLI;

EID: 79551501145     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0390224     Document Type: Conference Paper

References (19)

1. Rodionov, D.A., Dubchak, I.L., Arkin, A.P., Alm, E.J. and Gelfand, M.S. (2005) Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks. PLoS Comput. Biol. 1, e55
2. Sharma, H., Yu, S., Kong, J., Wang, J. and Steitz, T.A. (2009) Structure of apo-CAP reveals that large conformational changes are necessary for DNA binding. Proc. Natl. Acad. Sci. U.S.A. 106, 16604-16609
3. Postma, P.W., Lengeler, J.W. and Jacobson, G.R. (1993) Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria. Microbiol. Mol. Biol. Rev. 57, 543-594
4. Busby, S. and Ebright, R.H. (1999) Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 293, 199-213
5. Bell, A.I., Gaston, K.L., Cole, J.A. and Busby, S.J.W. (1989) Cloning of binding sequences for the Escherichia coli transcription activators, FNR and CRP: location of bases in discrimination between FNR and CRP. Nucleic Acids Res. 17, 3865-3874
6. Green, J., Crack, J.C., Thomson, A.J. and LeBrun, N.E. (2009) Bacterial sensors of oxygen. Curr. Opin. Microbiol. 12, 145-151
7. Marietou, A., Griffiths, L. and Cole, J. (2009) Preferential reduction of the thermodynamically less favorable electron acceptor, sulfate, by a nitrate-reducing strain of the sulfate-reducing bacterium Desulfovibrio desulfuricans 27774. J. Bacteriol. 191, 882-889
8. Marietou, A., Richardson, D., Cole, J. and Mohan, S. (2005) Nitrate reduction by Desulfovibrio desulfuricans: a periplasmic nitrate reductase system that lacks NapB, but includes a unique tetraheme c-type cytochrome, NapM. FEMS Microbiol. Lett. 248, 217-225
9. Muyzer, G. and Stams, A.J.M. (2008) The ecology and biotechnology of sulphate-reducing bacteria. Nat. Rev. Microbiol. 6, 441-454
10. Zinoni, F., Beier, A., Pecher, A., Wirth, R. and Böck, A. (1984) Regulation of the synthesis of hydrogenase (formate hydrogen-lyase linked) of E. coli. Arch. Microbiol. 139, 229-304
11. Dalsgaard, T. and Bak, F. (1994) Nitrate reduction in a sulfate-reducing bacterium, Desulfovibrio desulfuricans, isolated from rice paddy soil: sulfide inhibition, kinetics, and regulation. Appl. Environ. Microbiol. 60, 291-297
12. Rodionov, D.A., Dubchak, I., Arkin, A., Alm, E. and Gelfand, M.S. (2004) Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria. Genome Biol. 5, R90
13. He, Q., Huang, K.H., He, Z., Alm, E.J., Fields, M.W., Hazen, T.C., Arkin, A.P., Wall, J.D. and Zhou, J. (2006) Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. Appl. Environ. Microbiol. 72, 4370-4381
14. He, Q., He, Z., Joyner, D.C., Joachimiak, M., Price, M.N., Yang, Z.K., Yen, H.C.B., Hemme, C.L., Chen, W., Fields, M.M. et al. (2010) Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris. ISME J. 4, 1-12
15. Caffrey, S.M. and Vourdouw, G. (2010) Effect of sulfide on growth physiology and gene expression of Desulfovibrio vulgaris Hildenborough. Antonie van Leeuwenhoek 97, 11-20
16. Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R. et al. (2007) ClustalW and ClustalX version 2. Bioinformatics 21, 2947-2948
17. Münch, R., Hiller, K., Grote, A., Scheer, M., Klein, J., Schobert, M. and Jahn, D. (2005) Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. Bioinformatics 21, 4187-4189
18. Novichkov, P.S., Laikova, O.N., Novichkova, E.S., Gelfand, M.S., Arkin, A.P., Dubchak, I. and Rodionov, D.A. (2010) RegPrecise: a database of curated inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38, D111-D118
19. Haveman, S.A., Greene, E.A., Stilwell, C.P., Voordouw, J.K. and Voordouw, G. (2004) Physiological and gene expression analysis of inhibition of Desulfovibrio vulgaris Hildenborough by nitrite. J. Bacteriol. 186, 7944-7950