Analysis of pSC138, the multidrug resistance plasmid of Salmonella enterica serotype Choleraesuis SC-B67

Plasmid

Volumn 65, Issue 2, 2011, Pages 132-140

  Ye, Jiehua ^a   Su, Lin Hui ^b   Chen, Chyi Liang ^c   Hu, Songnian ^a   Wang, Jianbing ^a   Yu, Jun ^a   Chiu, Cheng Hsun ^b  

^a ZHEJIANG UNIVERSITY   (China)

^b CHANG GUNG UNIVERSITY COLLEGE OF MEDICINE   (Taiwan)

^c CHANG GUNG MEMORIAL HOSPITAL   (Taiwan)

Author keywords

Annotation; Multidrug resistance; Plasmid; Salmonella enterica serotype Choleraesuis; Sequence

Indexed keywords

CEFTRIAXONE;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIUM ISOLATE; CLINICAL ARTICLE; CONTROLLED STUDY; GENE INSERTION SEQUENCE; GENETIC RECOMBINATION; GRAM NEGATIVE SEPSIS; HUMAN; INTEGRON; MULTIDRUG RESISTANCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; PROPHAGE; SALMONELLA CHOLERAESUIS; TRANSPOSON;

BASE COMPOSITION; BASE SEQUENCE; DNA TRANSPOSABLE ELEMENTS; DRUG RESISTANCE, MULTIPLE; GENE ORDER; HUMANS; INVERTED REPEAT SEQUENCES; MOLECULAR SEQUENCE ANNOTATION; PLASMIDS; REPLICATION ORIGIN; SALMONELLA ENTERICA; SEQUENCE ALIGNMENT; SEROTYPING;

PROKARYOTA; SALMONELLA ENTERICA;

EID: 79551475232     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2010.11.007     Document Type: Article

References (62)

1. Allmeier H., Cresnar B., Greck M., Schmitt R. Complete nucleotide sequence of Tn1721: gene organization and a novel gene product with features of a chemotaxis protein. Gene 1992, 111:11-20.
2. Biedenbach D.J., Toleman M., Walsh T.R., Jones R.N. Analysis of Salmonella spp. with resistance to extended-spectrum cephalosporins and fluoroquinolones isolated in North America and Latin America: report from the SENTRY antimicrobial surveillance program (1997-2004). Diagn. Microbiol. Infect. Dis. 2006, 54:13-21.
3. Biel S.W., Berg D.E. Mechanism of IS1 transposition in E. coli: choice between simple insertion cointegration. Genetics 1984, 108:319-330.
4. Blattner F.R., Plunkett G., Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. The complete genome sequence of Escherichia coli K-12. Science 1997, 277:1453-1462.
5. Boyd D.A., Tyler S., Christianson S., McGeer A., Muller M.P., Willey B.M., Bryce E., Gardam M., Nordmann P., Mulvey M.R. Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum β-lactamase involved in an outbreak in long-term-care facilities in Toronto Canada. Antimicrob. Agents Chemother. 2004, 48:3758-3764.
6. Campanacci V., Bishop R.E., Blangy S., Tegoni M., Cambillau C. The membrane bound bacterial lipocalin Blc is a functional dimer with binding preference for lysophospholipids. FEBS Lett. 2006, 580:4877-4883.
7. Carattoli A., Bertini A., Villa L., Falbo V., Hopkins K.L., Threlfall E.J. Identification of plasmids by PCR-based replicon typing. J. Microbiol. Methods 2005, 63:219-228.
8. Chattoraj D.K. Control of plasmid DNA replication by iterons: no longer paradoxical. Mol. Microbiol. 2000, 37:467-476.
9. Chiu C.H., Wu T.L., Su L.H., Chu C., Chia J.H., Kuo A.J., Chien M.S., Lin T.Y. The emergence in Taiwan of fluoroquinolone resistance in Salmonella enterica serotype choleraesuis. N. Engl. J. Med. 2002, 346:413-419.
10. Chiu C.H., Wu T.L., Su L.H., Liu J.W., Chu C. Fluoroquinolone resistance in Salmonella enterica serotype Choleraesuis, Taiwan, 2000-2003. Emerg. Infect. Dis. 2004, 10:1674-1676.
11. Chiu C.H., Su L.H., Chu C., Chia J.H., Wu T.L., Lin T.Y., Lee Y.S., Ou J.T. Isolation of Salmonella enterica serotype Choleraesuis resistant to ceftriaxone and ciprofloxacin. Lancet 2004, 363:1285-1286.
12. Chiu C.H., Su L.H., Chu C. Salmonella enterica serotype Choleraesuis: epidemiology, pathogenesis, clinical disease, and treatment. Clin. Microbiol. Rev. 2004, 17:311-322.
13. Chiu C.H., Tang P., Chu C., Hu S., Bao Q., Yu J., Chou Y.Y., Wang H.S., Lee Y.S. The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen. Nucleic Acids Res. 2005, 33:1690-1698.
14. Chiu C.H., Su L.H., Chu C.H., Wang M.H., Yeh C.M., Weill F.X., Chu C. Detection of multidrug-resistant Salmonella enterica serovar Typhimurium phage types DT102, DT104 and U302 by multiplex PCR. J. Clin. Microbiol. 2006, 44:2354-2358.
15. Chu C., Chiu C.H. Evolution of the virulence plasmids of non-typhoid Salmonella and its association with antimicrobial resistance. Microbes Infect. 2006, 8:1931-1936.
16. Chu C., Chiu C.H., Wu W.Y., Chu C.H., Liu T.P., Ou J.T. Large drug resistance virulence plasmids of clinical isolates of Salmonella enterica serovar Choleraesuis. Antimicrob. Agents Chemother. 2001, 45:2299-2303.
17. Chung Y.J., Saier M.H. Overexpression of the Escherichia coli sugE gene confers resistance to a narrow range of quaternary ammonium compounds. J. Bacteriol. 2002, 184:2543-2545.
18. Couturier M., Bex F., Bergquist P.L., Maas W.K. Identification and classification of bacterial plasmids. Microbiol. Rev. 1988, 52:375-395.
19. Delcher A.L., Harmon D., Kasif S., White O., Salzberg S.L. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 1999, 27:4636-4641.
20. Deng W., Liou S.R., Plunkett G., Mayhew G.F., Rose D.J., Burland V., Kodoyianni V., Schwartz D.C., Blattner F.R. Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J. Bacteriol. 2003, 185:2330-2337.
21. Egorova S., Kaftyreva L., Grimont P.A., Weill F.X. Prevalence and characterization of extended-spectrum cephalosporin-resistant nontyphoidal Salmonella isolates in adults in Saint Petersburg Russia (2002-2005). Microb. Drug Resist. 2007, 13:102-107.
22. Egorova S., Timinouni M., Demartin M., Granier S.A., Whichard J.M., Sangal V., Fabre L., Delauné A., Pardos M., Millemann Y., Espié E., Achtman M., Grimont P.A., Weill F.X. Ceftriaxone-resistant Salmonella enterica serotype Newport France. Emerg. Infect. Dis. 2008, 14:954-957.
23. Fey P.D., Safranek T.J., Rupp M.E., Dunne E.F., Ribot E., Iwen P.C., Bradford P.A., Angulo F.J., Hinrichs S.H. Ceftriaxone-resistant Salmonella infection acquired by a child from cattle. N. Engl. J. Med. 2000, 342:1242-1249.
24. Fricke W.F., McDermott P.F., Mammel M.K., Zhao S., Johnson T.J., Rasko D.A., Fedorka-Cray P.J., Pedroso A., Whichard J.M., Leclerc J.E., White D.G., Cebula T.A., Ravel J. Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry. Appl. Environ. Microbiol. 2009, 75:5963-5971.
25. Frishman D., Mironov A., Gelfand M. Starts of bacterial genes: estimating the reliability of computer predictions. Gene 1999, 234:257-265.
26. Furuya N., Komano T. Surface exclusion gene of IncI1 plasmid R64: nucleotide sequence and analysis of deletion mutants. Plasmid 1994, 32:80-84.
27. Geier G.E., Modrich P. Recognition sequence of the Dam methylase of Escherichia coli K12 and mode of cleavage of Dpn I endonuclease. J. Biol. Chem. 1979, 254:1408-1413.
28. CMY-2 from multiple Salmonella plasmid backbones. Antimicrob. Agents Chemother. 2004, 48:2845-2852.
29. Gilmour M.W., Thomson N.R., Sanders M., Parkhill J., Taylor D.E. The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid 2004, 52:182-202.
30. Greene S.K., Stuart A.M., Medalla F.M., Whichard J.M., Hoekstra R.M., Chiller T.M. Distribution of multidrug-resistant human isolates of MDR-ACSSuT Salmonella Typhimurium and MDR-AmpC Salmonella Newport in the United States 2003-2005. Foodborne Pathog. Dis. 2008, 5:669-680.
31. Hama C., Takizawa T., Moriwaki H., Urasaki Y., Mizobuchi K. Organization of the replication control region of plasmid ColIb-P9. J. Bacteriol. 1990, 172:1983-1991.
32. Herikstad H., Hayes P., Mokhtar M., Fracaro M.L., Threlfall E.J., Angulo F.J. Emerging quinolone-resistant Salmonella in the United States. Emerg. Infect. Dis. 1997, 3:371-372.
33. Kaguni L.S., Kaguni J.M., Ray D.S. Replication of M13 oriC bacteriophages in Escherichia coli rep mutant is dependent on the cloned Escherichia coli replication origin. J. Bacteriol. 1981, 145:974-979.
34. Komano T., Yoshida T., Narahara K., Furuya N. The transfer region of IncI1 plasmid R64: similarities between R64 tra and Legionella icm/dot genes. Mol. Microbiol. 2000, 35:1348-1359.
35. Kulwichit W., Chatsuwan T., Unhasuta C., Pulsrikarn C., Bangtrakulnonth A., Chongthaleong A. Drug-resistant nontyphoidal Salmonella bacteremia, Thailand. Emerg. Infect. Dis. 2007, 13:501-502.
36. Langridge G.C., Nair S., Wain J. Nontyphoidal Salmonella serovars cause different degrees of invasive disease globally. J. Infect. Dis. 2009, 199:602-603.
37. Lee H.Y., Su L.H., Tsai M.H., Kim S.W., Chang H.H., Jung S.I., Park K.H., Perera J., Carlos C., Tan B.H., Kumarasinghe G., Chongthaleong A., Hsueh P.R., Liu J.W., Song J.H., Chiu C.H. High rate of reduced susceptibility to ciprofloxacin and ceftriaxone among nontyphoid Salmonella clinical isolates in Asia. Antimicrob. Agents Chemother. 2009, 53:2696-2699.
38. Lichens-Park A., Smith C.L., Syvanen M. Integration of bacteriophage lambda into the cryptic lambdoid prophages of Escherichia coli. J. Bacteriol. 1990, 172:2201-2208.
39. Liebert C.A., Hall R.M., Summers A.O. Transposon Tn21 flagship of the floating genome. Microbiol. Mol. Biol. Rev. 1999, 63:507-522.
40. McClelland M., Sanderson K.E., Spieth J., Clifton S.W., Latreille P., Courtney L., Porwollik S., Ali J., Dante M., Du F., Hou S., Layman D., Leonard S., Nguyen C., Scott K., Holmes A., Grewal N., Mulvaney E., Ryan E., Sun H., Florea L., Miller W., Stoneking T., Nhan M., Waterston R., Wilson R.K. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 2001, 413:852-856.
41. McClelland M., Sanderson K.E., Clifton S.W., Latreille P., Porwollik S., Sabo A., Meyer R., Bieri T., Ozersky P., McLellan M., Harkins C.R., Wang C., Nguyen C., Berghoff A., Elliott G., Kohlberg S., Strong C., Du F., Carter J., Kremizki C., Layman D., Leonard S., Sun H., Fulton L., Nash W., Miner T., Minx P., Delehaunty K., Fronick C., Magrini V., Nhan M., Warren W., Florea L., Spieth J., Wilson R.K. Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat. Genet. 2004, 36:1268-1274.
42. Meakins S., Fisher I.S., Berghold C., Gerner-Smidt P., Tschäpe H., Cormican M., Luzzi I., Schneider F., Wannett W., Coia J., Echeita A., Threlfall E.J., participants Enter-net Antimicrobial drug resistance in human nontyphoidal Salmonella isolates in Europe 2000-2004: a report from the Enter-net International Surveillance Network. Microb. Drug Resist. 2008, 14:31-35.
43. Mulder N.J., Apweiler R., Attwood T.K., Bairoch A., Barrell D., Bateman A., Binns D., Biswas M., Bradley P., Bork P., Bucher P., Copley R.R., Courcelle E., Das U., Durbin R., Falquet L., Fleischmann W., Griffiths-Jones S., Haft D., Harte N., Hulo N., Kahn D., Kanapin A., Krestyaninova M., Lopez R., Letunic I., Lonsdale D., Silventoinen V., Orchard S.E., Pagni M., Peyruc D., Ponting C.P., Selengut J.D., Servant F., Sigrist C.J., Vaughan R., Zdobnov E.M. The InterPro database, 2003 brings increased coverage and new features. Nucleic Acids Res. 2003, 31:315-318.
44. Newnham P.J., Taylor D.E. Molecular analysis of RepHI1A, a minimal replicon of the IncHI1 plasmid R27. Mol. Microbiol. 1994, 11:757-768.
45. Ng S.P., Davis B., Palombo E.A., Bhave M. A Tn5051-like mer-containing transposon identified in a heavy metal tolerant strain Achromobacter sp. AO22. BMC Res. Notes 2009, 2:38-44.
46. 2 plasmid containing Tn1696::Tn1 and IS5075-Tn21. Antimicrob. Agents Chemother. 2010, 54:825-834.
47. Oshima K., Toh H., Ogura Y., Sasamoto H., Morita H., Park S.H., Ooka T., Iyoda S., Taylor T.D., Hayashi T., Itoh K., Hattori M. Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult. DNA Res. 2008, 15:375-386.
48. Parkhill J., Dougan G., James K.D., Thomson N.R., Pickard D., Wain J., Churcher C., Mungall K.L., Bentley S.D., Holden M.T., Sebaihia M., Baker S., Basham D., Brooks K., Chillingworth T., Connerton P., Cronin A., Davis P., Davies R.M., Dowd L., White N., Farrar J., Feltwell T., Hamlin N., Haque A., Hien T.T., Holroyd S., Jagels K., Krogh A., Larsen T.S., Leather S., Moule S., O'Gaora P., Parry C., Quail M., Rutherford K., Simmonds M., Skelton J., Stevens K., Whitehead S., Barrell B.G. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 2001, 413:848-852.
49. Pasquali F., Kehrenberg C., Manfreda G., Schwarz S. Physical linkage of Tn3 and part of Tn1721 in a tetracycline and ampicillin resistance plasmid from Salmonella Typhimurium. J. Antimicrob. Chemother. 2005, 55:562-565.
50. Rajasekaran S., Jin X., Spouge J.L. The efficient computation of position-specific match scores with the fast Fourier Transform. J. Comput. Biol. 2002, 9:23-33.
51. Soravia-Dunand V.A., Loo V.G., Salit I.E. Aortitis due to Salmonella: report of 10 cases and comprehensive review of the literature. Clin. Infect. Dis. 1999, 29:862-868.
52. Stokes H.W., Hall R.M. A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons. Mol. Microbiol. 1989, 3:1669-1683.
53. Su L.H., Chiu C.H., Chu C., Wang M.H., Chia J.H., Wu T.L. In-vivo acquisition of ceftriaxone resistance in Salmonella enterica serotype anatum. Antimicrob. Agents Chemother. 2003, 47:563-567.
54. Su L.H., Chiu C.H., Chu C., Ou J.T. Antimicrobial resistance in nontyphoid Salmonella: a global challenge. Clin. Infect. Dis. 2004, 39:546-551.
55. Su L.H., Wu T.L., Chia J.H., Chu C., Kuo A.J., Chiu C.H. Increasing ceftriaxone resistance in Salmonella isolates from a university hospital in Taiwan. J. Antimicrob. Chemother. 2005, 55:846-852.
56. CMY-2 among Salmonella and other Enterobacteriaceae. J. Antimicrob. Chemother. 2006, 57:424-429.
57. Szczepanowski R., Braun S., Riedel V., Schneiker S., Krahn I., Pühler A., Schlüter A. The 120592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibiotic-resistance determinants two iron-acquisition systems and other putative virulence-associated functions. Microbiology 2005, 151:1095-1111.
58. Welch T.J., Fricke W.F., McDermott P.F., White D.G., Rosso M.L., Rasko D.A., Mammel M.K., Eppinger M., Rosovitz M.J., Wagner D., Rahalison L., Leclerc J.E., Hinshaw J.M., Lindler L.E., Cebula T.A., Carniel E., Ravel J. Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One 2007, 2:e309.
59. Whichard J.M., Gay K., Stevenson J.E., Joyce K.J., Cooper K.L., Omondi M., Medalla F., Jacoby G.A., Barrett T.J. Human Salmonella and concurrent decreased susceptibility to quinolones and extended-spectrum cephalosporins. Emerg. Infect. Dis. 2007, 13:1681-1688.
60. Woodford N., Carattoli A., Karisik E., Underwood A., Ellington M.J., Livermore D.M. A. Underwood, M.J. Ellington, D.M. Livermore, Complete nucleotide sequences of plasmids pEK204, pEK499, and pEK516, encoding CTX-M enzymes in three major Escherichia coli lineages from the United Kingdom, all belonging to the international O25:H4-ST131 clone. Antimicrob. Agents Chemother. 2009, 53:4472-4482.
61. Wu T.L., Chia J.H., Su L.H., Chiu C.H., Kuo A.J., Ma L., Siu L.K. CMY-2 β-lactamase-carrying community-acquired urinary tract Escherichia coli: genetic correlation with Salmonella enterica serotypes Choleraesuis and Typhimurium. Int. J. Antimicrob. Agents 2007, 29:410-416.
62. Yu H., Wang J., Ye J., Tang P., Chu C., Hu S., Chiu C.H. Complete nucleotide sequence of pSCV50, the virulence plasmid of Salmonella enterica serovar Choleraesuis SC-B67. Plasmid 2006, 55:145-151.