메뉴 건너뛰기




Volumn 44, Issue , 2010, Pages 77-87

DNA barcoding of fungi: A case study using ITS sequences for identifying aquatic hyphomycete species

Author keywords

Aquatic hyphomycetes; Evolutionary divergence; ITS . Barcode

Indexed keywords

FUNGI; HYPHOMYCETES; TRICLADIUM;

EID: 79251571633     PISSN: 15602745     EISSN: 18789129     Source Type: Journal    
DOI: 10.1007/s13225-010-0056-y     Document Type: Article
Times cited : (47)

References (42)
  • 2
    • 0002556348 scopus 로고
    • Bausteine zu einer Askomyzeten- Flora der BR Deutschland: In SÜddeutschland gefundene inoperculate Discomyzeten mit taxonomischen, ökologischen und chorologischen Hinweisen
    • Baral HO, Krieglsteiner GJ (1985) Bausteine zu einer Askomyzeten- Flora der BR Deutschland: In SÜddeutschland gefundene inoperculate Discomyzeten mit taxonomischen, ökologischen und chorologischen Hinweisen. Beih Z Mykol 6:1-160
    • (1985) Beih Z Mykol , vol.6 , pp. 1-160
    • Baral, H.O.1    Krieglsteiner, G.J.2
  • 4
    • 34250664644 scopus 로고    scopus 로고
    • Molecular approaches applied to aquatic hyphomycetes
    • DOI 10.1016/j.fbr.2007.02.003, PII S1749461307000097
    • Bärlocher F (2007) Molecular approaches applied to aquatic hyphomycetes. Fungal Biol Rev 21:19-24 (Pubitemid 46946868)
    • (2007) Fungal Biology Reviews , vol.21 , Issue.1 , pp. 19-24
    • Barlocher, F.1
  • 5
    • 64949184725 scopus 로고    scopus 로고
    • Reproduction and dispersal in aquatic hyphomycetes
    • Bärlocher F (2009) Reproduction and dispersal in aquatic hyphomycetes. Mycoscience 50:3-8
    • (2009) Mycoscience , vol.50 , pp. 3-8
    • Bärlocher, F.1
  • 6
    • 0001512209 scopus 로고
    • Dynamics of the fungal population on leaves in a stream
    • Bärlocher F, Kendrick B (1974) Dynamics of the fungal population on leaves in a stream. J Ecol 63:761-791
    • (1974) J Ecol , vol.63 , pp. 761-791
    • Bärlocher, F.1    Kendrick, B.2
  • 8
    • 33750708891 scopus 로고    scopus 로고
    • Phylogeny of selected aquatic hyphomycetes based on morphological and molecular data
    • DOI 10.1127/0029-5035/2006/0083-0311
    • Baschien C, Marvanová L, Szewzyk U (2006) Phylogeny of selected aquatic hyphomycetes based on morphological and molecular data. Nova Hedwig 83:311-352 (Pubitemid 44703896)
    • (2006) Nova Hedwigia , vol.83 , Issue.3-4 , pp. 311-352
    • Baschien, C.1    Marvanova, L.2    Szewzyk, U.3
  • 9
    • 27744476675 scopus 로고    scopus 로고
    • Molecular evidence confirms multiple origins of aquatic hyphomycetes
    • DOI 10.1017/S0953756205004119, PII S0953756205004119
    • Belliveau M, Bärlocher F (2005) Molecular evidence confirms multiple origin of aquatic hyphomycetes. Mycol Res 109:1407-1417 (Pubitemid 41609452)
    • (2005) Mycological Research , vol.109 , Issue.12 , pp. 1407-1417
    • Belliveau, M.J.-R.1    Barlocher, F.2
  • 10
    • 70449522982 scopus 로고    scopus 로고
    • Evolutionary relationships between aquatic anamorphs and teleomorphs: Tricladium and Varicosporium
    • Campbell J, Marvanová L, Gulis V (2009) Evolutionary relationships between aquatic anamorphs and teleomorphs: Tricladium and Varicosporium. Mycol Res 113:1322-1334
    • (2009) Mycol Res , vol.113 , pp. 1322-1334
    • Campbell, J.1    Marvanová, L.2    Gulis, V.3
  • 11
    • 0001072281 scopus 로고    scopus 로고
    • Ingoldian fungi: Some field and laboratory techniques
    • Descals E (1997) Ingoldian fungi: some field and laboratory techniques. Boll SocHist Nat Balears 40:169-221
    • (1997) Boll SocHist Nat Balears , vol.40 , pp. 169-221
    • Descals, E.1
  • 12
    • 63849312254 scopus 로고    scopus 로고
    • Techniques for handling Ingoldian fungi
    • Graça MAS, Bärlocher F, Gessner MO (eds), Springer, Netherlands
    • Descals E (2005) Techniques for handling Ingoldian fungi. In: Graça MAS, Bärlocher F, Gessner MO (eds) Methods to study litter decomposition: a practical guide. Springer, Netherlands, pp 129- 142
    • (2005) Methods to Study Litter Decomposition: A Practical Guide , pp. 129-142
    • Descals, E.1
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 46149121430 scopus 로고    scopus 로고
    • Fungal decomposers of plant litter in aquatic ecosystems
    • Kubicek CP, Druzhinina IS (eds), Environmental and microbial relationships, Springer, Berlin
    • Gessner MO, Gulis V, Kuehn KA, Chauvet E, Suberkropp K (2007) Fungal decomposers of plant litter in aquatic ecosystems. In: Kubicek CP, Druzhinina IS (eds) The Mycota, vol IV, Environmental and microbial relationships. Springer, Berlin, pp 301-324
    • (2007) The Mycota , vol.4 , pp. 301-324
    • Gessner, M.O.1    Gulis, V.2    Kuehn, K.A.3    Chauvet, E.4    Suberkropp, K.5
  • 15
    • 19944403061 scopus 로고
    • Hifomicetes (Deuteromycotina) acuáticos de Tierra del Fuego I
    • Godeas AM (1985) Hifomicetes (Deuteromycotina) acuáticos de Tierra del Fuego I. Physis (Buenos Aires) Secc B 43:7-9
    • (1985) Physis (Buenos Aires) Secc B , vol.43 , pp. 7-9
    • Godeas, A.M.1
  • 16
    • 84919642218 scopus 로고    scopus 로고
    • An illustrated key to the common temperate species of aquatic hyphomycetes
    • Graça MAS, Bärlocher F, Gessner MO (eds), Kluwer Academic, Dordrecht
    • Gulis V, Marvanová L, Descals E (2005) An illustrated key to the common temperate species of aquatic hyphomycetes. In: Graça MAS, Bärlocher F, Gessner MO (eds) Methods for studying litter decomposition. Kluwer Academic, Dordrecht, pp 130-153
    • (2005) Methods for Studying Litter Decomposition , pp. 130-153
    • Gulis, V.1    Marvanová, L.2    Descals, E.3
  • 18
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 20
    • 0035712954 scopus 로고    scopus 로고
    • The magnitude of fungal diversity: The 1.5 million species estimate revisited
    • Hawksworth DL (2001) The magnitude of fungal diversity: the 1.5 million species estimate revisited. Mycol Res 105:1422-1432 (Pubitemid 34134581)
    • (2001) Mycological Research , vol.105 , Issue.12 , pp. 1422-1432
    • Hawksworth, D.L.1
  • 21
    • 31344432889 scopus 로고    scopus 로고
    • The promise of DNA barcoding for taxonomy
    • DOI 10.1080/10635150500354886
    • Hebert PDN, Gregory TR (2005) The promise of DNA barcoding for taxonomy. Syst Biol 54:852-859 (Pubitemid 43142301)
    • (2005) Systematic Biology , vol.54 , Issue.5 , pp. 852-859
    • Hebert, P.D.N.1    Gregory, T.R.2
  • 23
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • DOI 10.1007/BF01731581
    • Kimura M (1980) A simple method of estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120 (Pubitemid 11166431)
    • (1980) Journal of Molecular Evolution , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 25
    • 0034394541 scopus 로고    scopus 로고
    • An evaluation of the use of ITS sequences in the taxonomy of the Hypocreales
    • Lieckfeldt E, Seifert KA(2000)An evaluation of the use of ITS sequences in the taxonomy of the Hypocreales. Stud Mycol 45:35-44
    • (2000) Stud Mycol , vol.45 , pp. 35-44
    • Lieckfeldt, E.1    Seifert, K.A.2
  • 26
    • 0004887491 scopus 로고    scopus 로고
    • Freshwater hyphomycetes: A survey with remarks on tropical taxa
    • Janardhanan KK, Rajendran C, Natarajan K, Hawksworth L (eds), Science Publishers Inc, Enfield
    • Marvanová L (1997) Freshwater hyphomycetes: a survey with remarks on tropical taxa. In: Janardhanan KK, Rajendran C, Natarajan K, Hawksworth L (eds) Tropical mycology. Science Publishers Inc, Enfield, pp 169-226
    • (1997) Tropical Mycology , pp. 169-226
    • Marvanová, L.1
  • 27
    • 70449532630 scopus 로고    scopus 로고
    • Aquatic hyphomycetes and their meiosporic relatives: Slow and laborious solving of a jig-saw puzzle
    • Ganguli BN, Deshmukh SK (eds) Anamaya Publishers, New Delhi
    • Marvanová L (2007) Aquatic hyphomycetes and their meiosporic relatives: slow and laborious solving of a jig-saw puzzle. In: Ganguli BN, Deshmukh SK (eds) Fungi multifaceted microbes. Anamaya Publishers, New Delhi, pp 128-152
    • (2007) Fungi Multifaceted Microbes , pp. 128-152
    • Marvanová, L.1
  • 28
    • 1042290880 scopus 로고    scopus 로고
    • New and rare hyphomycetes from streams of northwest Portugal
    • Marvanová L, Pascoal C, Cássio F (2003) New and rare hyphomycetes from streams of northwest Portugal. Part I. Cryptog Mycolog 243:39-358
    • (2003) Part I. Cryptog Mycolog , vol.243 , pp. 39-358
    • Marvanová, L.1    Pascoal, C.2    Cássio, F.3
  • 30
    • 45749142504 scopus 로고    scopus 로고
    • Intraspecific ITS variability in the Kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification
    • Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson KH (2008) Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol Bioinformatics 4:193-201 (Pubitemid 351865649)
    • (2008) Evolutionary Bioinformatics , vol.2008 , Issue.4 , pp. 193-201
    • Nilsson, R.H.1    Kristiansson, E.2    Ryberg, M.3    Hallenberg, N.4    Larsson, K.-H.5
  • 31
    • 25844437503 scopus 로고    scopus 로고
    • Aquatic hyphomycete diversity in streams of Northwest Portugal
    • Pascoal C,Marvanová L, Cássio F (2005) Aquatic hyphomycete diversity in streams of Northwest Portugal. Fungal Divers 19:109-128 (Pubitemid 41391640)
    • (2005) Fungal Diversity , vol.19 , pp. 109-128
    • Pascoal, C.1    Marvanova, L.2    Cassio, F.3
  • 32
    • 52649112500 scopus 로고    scopus 로고
    • Report of the planning workshop for all fungi DNA barcoding
    • Rossman A (2007) Report of the planning workshop for all fungi DNA barcoding. Inoculum 58:1-5
    • (2007) Inoculum , vol.58 , pp. 1-5
    • Rossman, A.1
  • 33
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 25844467647 scopus 로고
    • A new species of Tricladium from Kumaun Himalaya, India
    • Sati SC, Tiwari N (1992) A new species of Tricladium from Kumaun Himalaya, India. Mycol Res 96:229-232
    • (1992) Mycol Res , vol.96 , pp. 229-232
    • Sati, S.C.1    Tiwari, N.2
  • 37
    • 31344454555 scopus 로고    scopus 로고
    • DNA barcoding: Perspectives from a "Partnerships for Enhancing Expertise in Taxonomy" (PEET) debate
    • DOI 10.1080/10635150500354894
    • Smith VS (2005) DNA barcoding: perspectives from a "Partnerships for Enhancing Expertise in Taxonomy" (PEET) debate. Syst Biol 54:841-844 (Pubitemid 43142300)
    • (2005) Systematic Biology , vol.54 , Issue.5 , pp. 841-844
    • Smith, V.S.1
  • 38
    • 0001701824 scopus 로고
    • Fungi and bacteria associated with leaves during processing in a woodland stream
    • Suberkropp K, Klug MJ (1976) Fungi and bacteria associated with leaves during processing in a woodland stream. Ecology 57:707-719
    • (1976) Ecology , vol.57 , pp. 707-719
    • Suberkropp, K.1    Klug, M.J.2
  • 39
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 40
    • 67649845828 scopus 로고    scopus 로고
    • DNA barcode divergences among species and genera of birds and fishes
    • Ward RD (2009) DNA barcode divergences among species and genera of birds and fishes. Mol Ecol Resour 9:1077-1085
    • (2009) Mol Ecol Resour , vol.9 , pp. 1077-1085
    • Ward, R.D.1
  • 41
    • 0003666971 scopus 로고    scopus 로고
    • 3rd edn. Cambridge University Press, New York
    • Webster J, Weber RWS (2007) Introduction to fungi, 3rd edn. Cambridge University Press, New York
    • (2007) Introduction to Fungi
    • Webster, J.1    Rws, W.2
  • 42
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds), Academic, San Diego
    • White TJ, Bruns TD, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315-322
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.D.2    Lee, S.3    Taylor, J.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.