Whole-genome characterization of human group C rotaviruses: Identification of two lineages in the VP3 gene

Journal of General Virology

Volumn 92, Issue 2, 2011, Pages 361-369

  Yamamoto, Dai ^a   Ghosh, Souvik ^a   Kuzuya, Mitsutaka ^b   Wang, Yuan Hong ^c   Zhou, Xuan ^c   Chawla Sarkar, Mamta ^d   Paul, Shyamal Kumar ^e   Ishino, Masaho ^a   Kobayashi, Nobumichi ^a  

^a SAPPORO MEDICAL UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b Okayama Prefectural Institute for Environmental Science and Public Health   (Japan)

^c Wuhan Centers for Disease Prevention and Control   (China)

^d NATIONAL INSTITUTE OF CHOLERA AND ENTERIC DISEASES   (India)

^e MYMENSINGH MEDICAL COLLEGE   (Bangladesh)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN VP3; VIRUS RNA;

ARTICLE; BANGLADESH; CHINA; GENE CLUSTER; GENE SEQUENCE; GENETIC LINKAGE; GENETIC VARIABILITY; INDIA; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; ROTAVIRUS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIRUS GENOME; VIRUS STRAIN;

AMINO ACID SEQUENCE; ANIMALS; CAPSID PROTEINS; CATTLE; GENE EXPRESSION REGULATION, VIRAL; GENETIC VARIATION; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; ROTAVIRUS; SEQUENCE ALIGNMENT; SWINE;

ANIMALIA; BOVINAE; GRASS CARP REOVIRUS; ROTAVIRUS C; SUS;

EID: 79251522173     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.027375-0     Document Type: Article

References (41)

1. Bohl, E. H., Saif, L. J., Theil, K. W., Agnes, A. G. & Cross, R. F. (1982). Porcine pararotavirus: detection, differentiation from rotavirus, and pathogenesis in gnotobiotic pigs. J Clin Microbiol 15, 312-319.
2. Chang, K. O., Nielsen, P. R., Ward, L. A. & Saif, L. J. (1999). Dual infection of gnotobiotic calves with bovine strains of group A and porcine-like group C rotaviruses influences pathogenesis of the group C rotavirus. J Virol 73, 9284-9293.
3. Chen, Z., Lambden, P. R., Lau, J., Caul, E. O. & Clarke, I. N. (2002). Human group C rotavirus: completion of the genome sequence and gene coding assignments of a non-cultivatable rotavirus. Virus Res 83, 179-187.
4. Collins, P. J., Martella, V. & O'Shea, H. (2008). Detection and characterization of group C rotaviruses in asymptomatic piglets in Ireland. J Clin Microbiol 46, 2973-2979.
5. Cook, J. P. & McCrae, M. A. (2004). Sequence analysis of the guanylyltransferase (VP3) of group A rotaviruses. J Gen Virol 85, 929-932.
6. Esona, M. D., Geyer, A., Page, N., Trabelsi, A., Fodha, I., Aminu, M., Agbaya, V. A., Tsion, B., Kerin, T. K. & other authors (2009). Genomic characterization of human rotavirus G8 strains from the African rotavirus network: relationship to animal rotaviruses. J Med Virol 81, 937-951.
7. Estes, M. K. & Kapikian, A. Z. (2007). Rotaviruses. In Fields Virology, 5th edn, pp. 1917-1974. Edited by D. M. Knipe, P. M. Howley, D. E. Griffin, M. A. Martin, R. A. Lamb, B. Roizman & S. E. Straus. Philadelphia: Lippincott, Williams & Wilkins.
8. Gabbay, Y. B., Borges, A. A., Oliveira, D. S., Linhares, A. C., Mascarenhas, J. D., Barardi, C. R., Simões, C. M., Wang, Y., Glass, R. I. & Jiang, B. (2008). Evidence for zoonotic transmission of group C rotaviruses among children in Belém, Brazil. J Med Virol 80, 1666-1674.
9. Gouvea, V., Allen, J. R., Glass, R. I., Fang, Z. Y., Bremont, M., Cohen, J., McCrae, M. A., Saif, L. J., Sinarachatanant, P. & Caul, E. O. (1991). Detection of group B and C rotaviruses by polymerase chain reaction. J Clin Microbiol 29, 519-523.
10. Heiman, E. M., McDonald, S. M., Barro, M., Taraporewala, Z. F., Bar-Magen, T. & Patton, J. T. (2008). Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J Virol 82, 11106-11116.
11. Ito, H., Sugiyama, M., Masubuchi, K., Mori, Y. & Minamoto, N. (2001). Complete nucleotide sequence of a group A avian rotavirus genome and a comparison with its counterparts of mammalian rotaviruses. Virus Res 75, 123-138.
12. Jeong, Y. J., Park, S. I., Hosmillo, M., Shin, D. J., Chun, Y. H., Kim, H. J., Kwon, H. J., Kang, S. Y., Woo, S. K. & other authors (2009). Detection and molecular characterization of porcine group C rotaviruses in South Korea. Vet Microbiol 138, 217-224.
13. Jiang, B., Gentsch, J. R., Tsunemitsu, H., Saif, L. J. & Glass, R. I. (1999). Sequence analysis of the gene encoding VP4 of a bovine group C rotavirus: molecular evidence for a new P genotype. Virus Genes 19, 85-88.
14. Kapikian, A. Z., Hoshino, Y. & Chanock, R. M. (2001). Rotaviruses. In Fields Virology, 4th edn, pp. 1787-1833. Edited by D. M. Knipe, P. M. Howley, D. E. Griffin, M. A. Martin, R. A. Lamb, B. Roizman & S. E. Straus. Philadelphia: Lippincott, Williams & Wilkins.
15. Khamrin, P., Peerakome, S., Malasao, R., Mizuguchi, M., Okitsu, S., Ushijima, H. & Maneekarn, N. (2008). Genetic characterization of group C rotavirus isolated from a child hospitalized with acute gastroenteritis in Chiang Mai, Thailand. Virus Genes 37, 314-321.
16. Kuzuya, M., Fujii, R., Hamano, M., Yamada, M., Shinozaki, K., Sasagawa, A., Hasegawa, S., Kawamoto, H., Matsumoto, K. & other authors (1998). Survey of human group C rotaviruses in Japan during the winter of 1992 to 1993. J Clin Microbiol 36, 6-10.
17. Kuzuya, M., Fujii, R., Hamano, M., Nishijima, M. & Ogura, H. (2007). Detection and molecular characterization of human group C rotaviruses in Okayama Prefecture, Japan, between 1986 and 2005. J Med Virol 79, 1219-1228.
18. Liu, M., Mattion, N. M. & Estes, M. K. (1992). Rotavirus VP3 expressed in insect cells possesses guanylyltransferase activity. Virology 188, 77-84.
19. Mackow, E. R. (1995). Group B and C rotaviruses. In Infections of the Gastrointestinal Tract, pp. 983-1008. Edited by M. J. Blaser, P. D. Smith, J. I. Ravdin, H. B. Greenberg & R. L. Guerrant. New York: Raven Press.
20. Martella, V., Banyai, K., Lorusso, E., Decaro, N., Bellacicco, A., Desario, C., Corrente, M., Greco, G., Moschidou, P. & other authors (2007). Genetic heterogeneity in the VP7 of group C rotaviruses. Virology 367, 358-366.
21. Matsumoto, K., Hatano, M., Kobayashi, K., Hasegawa, A., Yamazaki, S., Nakata, S., Chiba, S. & Kimura, Y. (1989). An outbreak of gastroenteritis associated with acute rotaviral infection in schoolchildren. J Infect Dis 160, 611-615.
22. Matthijnssens, J., Rahman, M., Yang, X., Delbeke, T., Arijs, I., Kabue, J. P., Muyembe, J. J. & Van Ranst, M. (2006). G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J Clin Microbiol 44, 1801-1809.
23. Matthijnssens, J., Ciarlet, M., Heiman, E., Arijs, I., Delbeke, T., McDonald, S. M., Palombo, E. A., Iturriza-Gomara, M., Maes, P. & other authors (2008a). Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82, 3204-3219.
24. Matthijnssens, J., Ciarlet, M., Rahman, M., Attoui, H., Banyai, K., Estes, M. K., Gentsch, J. R., Iturriza-Gomara, M., Kirkwood, C. D. & other authors (2008b). Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch Virol 153, 1621-1629.
25. Matthijnssens, J., Rahman, M. & Van Ranst, M. (2008c). Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin. J Gen Virol 89, 2630-2635.
26. Mawatari, T., Taneichi, A., Kawagoe, T., Hosokawa, M., Togashi, K. & Tsunemitsu, H. (2004). Detection of a bovine group C rotavirus from adult cows with diarrhea and reduced milk production. J Vet Med Sci 66, 887-890.
27. Mitui, M. T., Bozdayi, G., Dalgic, B., Bostanci, I., Nishizono, A. & Ahmed, K. (2009). Molecular characterization of a human group C rotavirus detected first in Turkey. Virus Genes 39, 157-164.
28. Nagashima, S., Kobayashi, N., Ishino, M., Alam, M. M., Ahmed, M. U., Paul, S. K., Ganesh, B., Chawla-Sarkar, M., Krishnan, T. & other authors (2008). Whole genomic characterization of a human rotavirus strain B219 belonging to a novel group of the genus Rotavirus. J Med Virol 80, 2023-2033.
29. Nilsson, M., Svenungsson, B., Hedlund, K. O., Uhnoo, I., Lagergren, A., Akre, T. & Svensson, L. (2000). Incidence and genetic diversity of group C rotavirus among adults. J Infect Dis 182, 678-684.
30. Otto, P., Schulze, P. & Herbst, W. (1999). Demonstration of group C rotaviruses in fecal samples of diarrheic dogs in Germany. Arch Virol 144, 2467-2473.
31. Pizarro, J. L., Sandino, A. M., Pizarro, J. M., Fernandez, J. & Spencer, E. (1991). Characterization of rotavirus guanylyltransferase activity associated with polypeptide VP3. J Gen Virol 72, 325-332.
32. Rahman, M., Banik, S., Faruque, A. S., Taniguchi, K., Sack, D. A., Van Ranst, M. & Azim, T. (2005). Detection and characterization of human group C rotaviruses in Bangladesh. J Clin Microbiol 43, 4460-4465. (Pubitemid 41298228)
33. Rahman, M., Matthijnssens, J., Yang, X., Delbeke, T., Arijs, I., Taniguchi, K., Iturriza-Gómara, M., Iftekharuddin, N., Azim, T. & Van Ranst, M. (2007). Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 81, 2382-2390.
34. Rodger, S. M., Bishop, R. F. & Holmes, I. H. (1982). Detection of a rotavirus-like agent associated with diarrhea in an infant. J Clin Microbiol 16, 724-726.
35. Santos, N. & Hoshino, Y. (2005). Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15, 29-56.
36. Schnagl, R. D., Boniface, K., Cardwell, P., McCarthy, D., Ondracek, C., Coulson, B., Erlich, J. & Morey, F. (2004). Incidence of group C human rotavirus in central Australia and sequence variation of the VP7 and VP4 genes. J Clin Microbiol 42, 2127-2133.
37. Torres-Medina, A. (1987). Isolation of an atypical rotavirus causing diarrhea in neonatal ferrets. Lab Anim Sci 37, 167-171.
38. Tsunemitsu, H., Saif, L. J., Jiang, B. M., Shimizu, M., Hiro, M., Yamaguchi, H., Ishiyama, T. & Hirai, T. (1991). Isolation, characterization, and serial propagation of a bovine group C rotavirus in a monkey kidney cell line (MA104). J Clin Microbiol 29, 2609-2613.
39. Tsunemitsu, H., Jiang, B. & Saif, L. J. (1996). Sequence comparison of the VP7 gene encoding the outer capsid glycoprotein among animal and human group C rotaviruses. Arch Virol 141, 705-713. (Pubitemid 126706526)
40. Wang, Y.-H., Zhou, X., Kobayashi, N., Zhu, Z.-R., Liu, M.-Q. & Yang, Z.-Q. (2007). Amplification of entire fragment of group C rotavirus genes and the sequence analysis on VP6 and VP7 genes in the field strain Wu-82 isolated in Wuhan area. Chin J Zoonoses 23, 1167-1171 (in Chinese).
41. Yamamoto, D., Ghosh, S., Ganesh, B., Krishnan, T., Chawla-Sarkar, M., Alam, M. M., Aung, T. S. & Kobayashi, N. (2010). Analysis of genetic diversity and molecular evolution of human group B rotaviruses based on whole genome segments. J Gen Virol 91, 1772-1781.