Genetic heterogeneity in the VP7 of group C rotaviruses

Virology

Volumn 367, Issue 2, 2007, Pages 358-366

  Martella, Vito ^a   Bányai, Krisztián ^b   Lorusso, Eleonora ^a   Decaro, Nicola ^a   Bellacicco, Anna ^a   Desario, Costantina ^a   Corrente, Marialaura ^a   Greco, Grazia ^a   Moschidou, Paschalina ^a   Tempesta, Maria ^a   Arista, Serenella ^c   Ciarlet, Max ^d   Lavazza, Antonio ^e   Buonavoglia, Canio ^a  

^a UNIVERSITY OF BARI   (Italy)

^b UNIVERSITY OF PÉCS   (Hungary)

^c UNIVERSITY OF PALERMO   (Italy)

^d MERCK RESEARCH LABORATORIES   (United States)

^e ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLA LOMBARDIA E DELL EMILIA ROMAGNA   (Italy)

Author keywords

Enteritis; Group C rotavirus; Pigs; Zoonosis

Indexed keywords

ARTICLE; GASTROENTERITIS; GENE INSERTION; GENE MUTATION; GENE SEQUENCE; GENETIC HETEROGENEITY; GENETIC RECOMBINATION; GENOTYPE; GROUP C ROTAVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; ROTAVIRUS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SWINE DISEASE; VIRUS GENE; VIRUS STRAIN; VP7 GENE;

AMINO ACID SEQUENCE; ANIMALS; ANTIGENS, VIRAL; CAPSID PROTEINS; EVOLUTION, MOLECULAR; GENETIC HETEROGENEITY; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; ROTAVIRUS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY, AMINO ACID; SWINE;

ANIMALIA; BOVINAE; GRASS CARP REOVIRUS; ROTAVIRUS C; SUIDAE; SUS;

EID: 34648841990     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2007.05.039     Document Type: Article

References (61)

1. Adah M.I., Wade A., Oseto M., Kuzuya M., and Taniguchi K. Detection of human group C rotaviruses in Nigeria and sequence analysis of their genes encoding VP4, VP6, and VP7 proteins. J. Med. Virol. 66 (2002) 269-275
2. Alam M.M., Kobayashi N., Ishino M., Ahmed M.S., Ahmed M.U., Paul S.K., Muzumdar B.K., Hussain Z., Wang Y.H., and Naik T.N. Genetic analysis of an ADRV-N-like novel rotavirus strain B219 detected in a sporadic case of adult diarrhea in Bangladesh. Arch. Virol. 152 (2007) 199-208
3. Arista S., Giovannelli L., Pistoia D., Cascio A., Parea M., and Gerna G. Electropherotypes, subgroups and serotypes of human rotavirus strains causing gastroenteritis in infants and young children in Palermo, Italy, from 1985 to 1989. Res. Virol. 141 (1990) 435-448
4. Arista S., Giammanco G.M., De Grazia S., Ramirez S., Lo Biundo C., Colomba C., Cascio A., and Martella V. Heterogeneity and temporal dynamics of evolution of G1 human rotaviruses in a settled population. J. Virol. 80 (2006) 10724-10733
5. Bányai K., Jiang B., Bogdan A., Horvath B., Jakab F., Meleg E., Martella V., Magyari L., Melegh B., and Szucs G. Prevalence and molecular characterization of human group C rotaviruses in Hungary. J. Clin. Virol. 37 (2006) 317-322
6. Bohl E.H., Saif L.J., Theil K.W.A., Agnes G., and Cross R.F. Porcine pararotavirus: detection, differentiation from rotavirus, and pathogenesis in gnotobiotic pigs. J. Clin. Microbiol. 15 (1982) 312-319
7. Boom R., Sol C.J., Salimans M.M., Jansen C.L., Wertheim-van Dillen P.M., and van der Noordaa J. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28 (1990) 495-503
8. Bridger J.C. A definition of bovine rotavirus virulence. J. Gen. Virol. 75 (1994) 2807-2812
9. Bridger J.C., Pedley S., and McCrae M.A. Group C rotaviruses in humans. J. Clin. Microbiol. 23 (1986) 760-763
10. Castello A.A., Arguelles M.H., Villegas G.A., Olthoff A., and Glikmann G. Incidence and prevalence of human group C rotavirus infections in Argentina. J. Med. Virol. 67 (2002) 106-112
11. Caul E.O., Ashley C.R., Darville J.M., and Bridger J.C. Group C rotavirus associated with fatal enteritis in a family outbreak. J. Med. Virol. 30 (1990) 201-205
12. Chang K.O., Nielsen P.R., Ward L.A., and Saif L.J. Dual infection of gnotobiotic calves with bovine strains of group A and porcine-like group C rotaviruses influences pathogenesis of the group C rotavirus. J. Virol. 73 (1999) 9284-9293
13. Ciarlet M., and Estes M.K. Rotaviruses: basic biology, epidemiology and methodologies. In: Bitton G. (Ed). Encyclopedia of Environmental Microbiology (2002), John Wiley & Sons, New York, USA 2753-2773
14. Ciarlet M., Estes M.K., and Conner M.E. Comparative amino acid sequence analysis of the outer capsid protein VP4 from four lapine rotavirus strains reveal identity with genotype P[14] human rotavirus. Arch. Virol. 142 (1997) 1059-1069
15. Dunn S.J., Greenberg H.B., Ward R.L., Nakagomi O., Burns J.W., Vo P.T., Pax K.A., Das M., Gowda K., and Rao C.D. Serotypic and genotypic characterization of human serotype 10 rotaviruses from asymptomatic neonates. J. Clin. Microbiol. 31 (1993) 165-169
16. Fielding P.A., Lambden P.R., Caul E.O., and Clarke I.N. Molecular characterization of the outer capsid spike protein (VP4) gene from human group C rotavirus. Virology 204 (1994) 442-446
17. Fujii R., Kuzuya M., Hamano M., Ogura H., Yamada M., and Mori T. Neutralization assay for human group C rotaviruses using a reverse hemagglutination test for endpoint determination. J. Clin. Microbiol. 38 (2000) 50-54
18. Gabbay Y.B., Borges A.A., Barardi C.R.M., Linhares A.C., Mascarenhas J.D.P., Simoe J.D.P., Glass R.I., and Jiang B. Excretion profiles of porcine and human group C rotaviruses in children from Belem, Para, Brazil: evidence for interspecies transmission and sequential infections. Proceedings of the 9th Double Stranded RNA Viruses Meeting, Cape Town, South Africa (2006) 109
19. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., Das B.K., and Bhan M.K. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 30 (1992) 1365-1373
20. Gouet P., Contrepois M., Dubourguier H.C., Riou Y., Scherrer R., Laporte J., Vautherot J.F., Cohen J., and L'Haridon R. The experimental production of diarrhoea in colostrum deprived axenic and gnotoxenic calves with enteropathogenic Escherichia coli, rotavirus, coronavirus and in a combined infection of rotavirus and E. coli. Ann. Rech. Vet. 9 (1978) 433-440
21. Green K.Y., Sears J.F., Taniguchi K., Midthun K., Hoshino Y., Gorziglia M., Nishikawa K., Urasawa S., Kapikian A.Z., Chanock R.M., and Flores J. Prediction of human rotavirus serotype by nucleotide sequence analysis of the VP7 protein gene. J. Virol. 62 (1988) 1819-1823
22. Green K.Y., Hoshino Y., and Ikegami N. Sequence analysis of the gene encoding the serotype-specific glycoprotein (VP7) of two new human rotavirus serotypes. Virology 168 (1989) 429-433
23. Grice A.S., Lambden P.R., Caul E.O., and Clarke I.N. Sequence conservation of the major outer capsid glycoprotein of human group C rotaviruses. J. Med. Virol. 44 (1994) 166-171
24. Hall T.A. BioEdit: a user-friendly biological sequence alignment and analysis program for Windows 95/98/NT. Nucl. Acids Symp. 41 (1999) 95-98
25. Iturriza-Gómara M., Clarke I., Desselberger U., Brown D., Thomas D., and Gray J. Seroepidemiology of group C rotavirus infection in England and Wales. Eur. J. Epidemiol. 19 (2004) 589-595
26. Jiang B.M., Dennehy P.H., Spangenberger S., Gentsch J.R., and Glass R.I. First detection of Group C rotavirus in fecal specimens of children with diarrhea in the United States. J. Infect. Dis. 172 (1995) 45-50
27. Jiang B., Tsunemitsu H., Dennehy P.H., Oishi I., Brown D., Schnagl R.D., Oseto M., Fang Z.Y., Avendano L.F., Saif L.J., and Glass R.I. Sequence conservation and expression of the gene encoding the outer capsid glycoprotein among human group C rotaviruses of global distribution. Arch. Virol. 141 (1996) 381-390
28. Jiang B., Gentsch J.R., Tsunemitsu H., Saif L.J., and Glass R.I. Sequence analysis of the gene encoding VP4 of a bovine group C rotavirus: molecular evidence for a new P genotype. Virus Genes 19 (1999) 85-88
29. Jiang X., Huang P.W., Zhong W.M., Farkas T., Cubitt D.W., and Matson D.O. Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR. J. Virol. Methods 83 (1999) 145-154
30. Kapikian A.Z., and Chanock R.M. Rotaviruses. In: Fileds B.N., Knipe D.M., Howley P.M., Chanock R.M., Melnick J.L., Monath T.P., Roizman B., and Strais S.E. (Eds). Fields Virology. 3rd ed. (1996), Lippincott-Raven, Philadelphia 1657-1708
31. Kapikian A.Z., Hoshino Y., and Chanock R.M. Rotaviruses. In: Knipe D.M., Howley P.M., Griffin D.E., Lamb R.A., Martin M.A., Roizman B., and Strais S.E. (Eds). Fields Virology. 4th ed. (2001), Lippincott Williams and Wilkins, Philadelphia 1787-1833
32. Kim Y., Chang K.O., Straw B., and Saif L.J. Characterization of group C rotaviruses associated with diarrhea outbreaks in feeder pigs. J. Clin. Microbiol 37 (1999) 1484-1488
33. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5 (2004) 150-163
34. Kuzuya M., Fujii R., Hamano M., Yamada M., Shinozaki K., Sasagawa A., Hasegawa S., Kawamoto H., Matsumoto K., Kawamoto A., Itagaki A., Funatsumaru S., and Urasawa S. Survey of human group C rotaviruses in Japan during the winter of 1992 to 1993. J. Clin. Microbiol. 36 (1998) 6-10
35. Kuzuya M., Hamano M., Nishijima M., Fujii R., Ogura H., Tanaka M., Oda A., Kusaka S., and Naitou M. An outbreak of acute gastroenteritis caused by human group C rotavirus in a welfare institution in Okayama prefecture. Jpn. J. Infect. Dis. 58 (2005) 255-257
36. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., and Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73 (1999) 152-160
37. Martella V., Ciarlet M., Bányai K., Lorusso E., Arista S., Lavazza A., Pezzetti G., Decaro N., Cavalli A., Lucente M.S., Corrente M., Elia G., Camero M., Tempesta M., and Buonavoglia C. Identification of group A porcine rotavirus strains bearing a novel VP4 (P) genotype in Italian swine herds. J. Clin. Microbiol. 45 (2007) 577-580
38. Martella V., Bányai K., Lorusso E., Bellacicco A.L., Decaro N., Camero M., Bozzo G., Moschidou P., Arista S., Pezzotti G., Lavazza A., and Buonavoglia C. Prevalence of group C rotaviruses in weaning and post-weaning pigs with enteritis. Vet. Microbiol. 123 (2007) 26-33
39. Martin D.P., Williamson C., and Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21 (2005) 260-262
40. Mawatari T., Taneichi A., Kawagoe T., Hosokawa M., Togashi K., and Tsunemitsu H. Detection of a bovine group C rotavirus from adult cows with diarrhea and reduced milk production. J. Vet. Med. Sci. 66 (2004) 887-890
41. Oseto M., Yamashita Y., Hattori M., Mori M., Inoue H., Ishimaru Y., and Matsuno S. Serial propagation of human group C rotavirus in a continuous cell line (CaCo-2). J. Clin. Exp. Med. 168 (1994) 177-178
42. Otto P., Schulze P., and Herbst W. Demonstration of group C rotaviruses in fecal samples of diarrheic dogs in Germany. Arch. Virol. 144 (1999) 2467-2473
43. Parra G.I., Bok K., Martinez M., and Gómez J.A. Evidence of rotavirus intragenic recombination between two sublineages of the same genotype. J. Gen. Virol. 85 (2004) 1713-1716
44. Qian Y.A., Jiang B.M., Saif L.J., Kang S.Y., Ishimaru Y., Yamashita Y., Oseto M., and Green K.Y. Sequence conservation of gene 8 between human and porcine group C rotaviruses and its relationship to the VP7 gene of group A rotaviruses. Virology 182 (1991) 562-569
45. Rahman M., Banik S., Faruque A.S., Taniguchi K., Sack D.A., Van Ranst M., and Azim T. Detection and characterization of human group C rotaviruses in Bangladesh. J. Clin. Microbiol. 43 (2005) 4460-4465
46. Rodger S.M., Bishop R.F., and Holmes I.H. Detection of a rotavirus-like agent associated with diarrhea in an infant. J. Clin. Microbiol. 16 (1982) 724-726
47. Saif L.J., and Jiang B. Nongroup A rotaviruses of humans and animals. Curr. Top. Microbiol. Immunol. 185 (1994) 339-371
48. Saif L.J., Bohl E.H., Theil K.W., Cross R.F., and House J.A. Rotavirus-like, calicivirus-like, and 23-nm virus-like particles associated with diarrhea in young pigs. J. Clin. Microbiol. 12 (1980) 105-111
49. Sánchez-Fauquier A., Roman E., Colomina J., Wilhelmi I., Glass R.I., and Jiang B. First detection of group C rotavirus in children with acute diarrhea in Spain. Arch. Virol. 148 (2003) 399-404
50. Schnagl R.D., Boniface K., Cardwell P., McCarthy D., Ondracek C., Coulson B., Erlich J., and Morey F. Incidence of group C human rotavirus in central Australia and sequence variation of the VP7 and VP4 genes. J. Clin. Microbiol. 42 (2004) 2127-2133
51. Steyer A., Poljsak-Prijatelj M., Barlic-Maganja D., Jamnikar U., Mijovski J.Z., and Marin J. Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia. Virology 359 (2007) 275-282
52. Suzuki Y., Gojobori T., and Nakagomi O. Intragenic recombinations in rotaviruses. FEBS Lett. 427 (1998) 183-187
53. Szucs G., Kende M., and Uj M. Atypical human rotaviruses in Hungary. Ann. Inst. Pasteur/Virol. 138 (1987) 391-395
54. Terrett L.A., Saif L.J., Theil K.W., and Kohler E.M. Physicochemical characterization of porcine pararotavirus and detection of virus and viral antibodies using cell culture immunofluorescence. J. Clin. Microbiol. 25 (1987) 268-272
55. Thouless M.E., DiGiacomo R.F., and Deeb B.J. The effect of combined rotavirus and Escherichia coli infections in rabbits. Lab. Anim. Sci. 46 (1996) 381-385
56. Torres-Median A. Isolation of an atypical rotavirus causing diarrhea in neonatal ferrets. Lab. Anim. Sci. 37 (1987) 167
57. Tsunemitsu H., Saif L.J., Jiang B., Shimizu M., Hiro M., Yamaguchi H., Ishiyama T., and Hirai T. Isolation, characterization, and serial propagation of a bovine group C rotavirus in a monkey kidney cell line (MA104). J. Clin. Microbiol. 29 (1991) 2609-2613
58. Tsunemitsu H., Jiang B., and Saif L.J. Detection of group C rotavirus antigens and antibodies in animals and humans by enzyme-linked immunosorbent assays. J. Clin. Microbiol. 30 (1992) 2129-2134
59. Tsunemitsu H., Jiang B., Yamashita Y., Oseto M., Ushijima H., and Saif L. Evidence of serologic diversity within group C rotaviruses. J. Clin. Microbiol. 30 (1992) 3009-3012
60. Tsunemitsu H., Jiang B., and Saif L.J. Sequence comparison of the VP7 gene encoding the outer capsid glycoprotein among animal and human group C rotaviruses. Arch. Virol. 141 (1996) 705-713
61. Yang H., Makeyev E.V., Kang Z., Ji S., Bamford D.H., and van Dijk A.A. Cloning and sequence analysis of dsRNA segments 5, 6 and 7 of a novel non-group A, B, C adult rotavirus that caused an outbreak of gastroenteritis in China. Virus Res. 106 (2004) 15-26