-
1
-
-
0026593806
-
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
-
Antao, V. P., and Tinoco, I., Jr. (1992). Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops. Nucleic Acids Res. 20, 819-824.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 819-824
-
-
Antao, V.P.1
Tinoco I., Jr.2
-
2
-
-
0025942059
-
A thermodynamic study of unusually stable RNA and DNA hairpins
-
Antao, V. P., Lai, S. Y., and Tinoco, I., Jr. (1991). A thermodynamic study of unusually stable RNA and DNA hairpins. Nucleic Acids Res. 19, 5901-5905.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 5901-5905
-
-
Antao, V.P.1
Lai, S.Y.2
Tinoco I., Jr.3
-
3
-
-
0028268016
-
Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base pairs
-
Battiste, J. L., Tan, R., Frankel, A. D., and Williamson, J. R. (1994). Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base pairs. Biochemistry 33, 2741-2747.
-
(1994)
Biochemistry
, vol.33
, pp. 2741-2747
-
-
Battiste, J.L.1
Tan, R.2
Frankel, A.D.3
Williamson, J.R.4
-
4
-
-
0028892438
-
Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract
-
Baumstark, T., and Riesner, D. (1995). Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract. Nucleic Acids Res. 23, 4246-4254.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4246-4254
-
-
Baumstark, T.1
Riesner, D.2
-
5
-
-
0003827689
-
Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA
-
Branch, A. D., Benenfeld, B. J., and Robertson, H. D. (1985). Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA. Proc. Natl. Acad. Sci. USA 82, 6590-6594.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 6590-6594
-
-
Branch, A.D.1
Benenfeld, B.J.2
Robertson, H.D.3
-
6
-
-
0029258446
-
Interactions between the double-stranded RNA binding motif and RNA: Definition of the binding site for the interferon-induced protein kinase DAI on adenovirus VA RNA
-
Clarke, P. A., and Matthews, M. B. (1995). Interactions between the double-stranded RNA binding motif and RNA: definition of the binding site for the interferon-induced protein kinase DAI on adenovirus VA RNA. RNA 1, 7-20.
-
(1995)
RNA
, vol.1
, pp. 7-20
-
-
Clarke, P.A.1
Matthews, M.B.2
-
7
-
-
0027988099
-
Structural features of adenovirus 2 virus-associated RNA required for binding to the protein kinase DAI
-
Clarke, P. A., Pe'ery, T., Ma, Y., and Matthews, M. B. (1994). Structural features of adenovirus 2 virus-associated RNA required for binding to the protein kinase DAI. Nucleic Acids Res. 22, 4364-4374.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4364-4374
-
-
Clarke, P.A.1
Pe'ery, T.2
Ma, Y.3
Matthews, M.B.4
-
8
-
-
0021101218
-
Construction of infectious potato spindle tuber viroid cDNA clones
-
Cress, D. E., Kiefer, M. C., and Owens, R. A. (1983). Construction of infectious potato spindle tuber viroid cDNA clones. Nucleic Acids Res. 11, 6821-6835.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 6821-6835
-
-
Cress, D.E.1
Kiefer, M.C.2
Owens, R.A.3
-
11
-
-
0028298638
-
In vitro analysis of virus-associated RNA I (VAI RNA): Inhibition of the double-stranded RNA-activated protein kinase PKR by VAI RNA mutants correlates with the in vivo phenotype and the structural integrity of the central domain
-
Ghadge, G., Malhotra, P., Furtado, M. R., Dhar, R., and Thimmapaya, B. (1994). In vitro analysis of virus-associated RNA I (VAI RNA): Inhibition of the double-stranded RNA-activated protein kinase PKR by VAI RNA mutants correlates with the in vivo phenotype and the structural integrity of the central domain. J. Virol. 68, 4137-4151.
-
(1994)
J. Virol.
, vol.68
, pp. 4137-4151
-
-
Ghadge, G.1
Malhotra, P.2
Furtado, M.R.3
Dhar, R.4
Thimmapaya, B.5
-
12
-
-
0024295554
-
Characterization of RNA hairpin loop stability
-
Groebe, D. R., and Uhlenbeck, O. C. (1988). Characterization of RNA hairpin loop stability. Nucleic Acids Res. 16, 11725-11735.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 11725-11735
-
-
Groebe, D.R.1
Uhlenbeck, O.C.2
-
13
-
-
0017821271
-
Nucleotide sequence and secondary structure of potato spindle tuber viroid
-
Gross, H. J., Domdey, H., Lossow, C., Jank, P., Raba, M., Alberty, H., and Sänger, H. L. (1978). Nucleotide sequence and secondary structure of potato spindle tuber viroid. Nature 273, 203-208.
-
(1978)
Nature
, vol.273
, pp. 203-208
-
-
Gross, H.J.1
Domdey, H.2
Lossow, C.3
Jank, P.4
Raba, M.5
Alberty, H.6
Sänger, H.L.7
-
14
-
-
0028989671
-
Interdependence of pathogenicity and replicability with potato spindle tuber viroid
-
Gruner, R., Fels, A., Qu, F., Zimmat, R., Steger, G., and Riesner, D. (1995). Interdependence of pathogenicity and replicability with potato spindle tuber viroid. Virology 209, 60-69.
-
(1995)
Virology
, vol.209
, pp. 60-69
-
-
Gruner, R.1
Fels, A.2
Qu, F.3
Zimmat, R.4
Steger, G.5
Riesner, D.6
-
15
-
-
0028261409
-
Lessons from an evolving RNA: 16S and 23S rRNA structures from a comparative perspective
-
Gutell, R. R., Larsen, N., and Woese, C. R. (1994). Lessons from an evolving RNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58, 10-26.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 10-26
-
-
Gutell, R.R.1
Larsen, N.2
Woese, C.R.3
-
16
-
-
0026550732
-
Analysis of the virulence modulating region of potato spindle tuber viroid (PSTVd) by site-directed mutagenesis
-
Hammond, R. W. (1992). Analysis of the virulence modulating region of potato spindle tuber viroid (PSTVd) by site-directed mutagenesis. Virology 187, 654-662.
-
(1992)
Virology
, vol.187
, pp. 654-662
-
-
Hammond, R.W.1
-
17
-
-
0024293487
-
The 7S RNA from tomato leaf tissue resembles a signal recognition particle RNA and exhibits a remarkable sequence complementarity to viroids
-
Haas, B., Klanner, A., Ramm, K., and Sänger, H. L. (1988). The 7S RNA from tomato leaf tissue resembles a signal recognition particle RNA and exhibits a remarkable sequence complementarity to viroids. EMBO J. 7, 4063-4074.
-
(1988)
EMBO J.
, vol.7
, pp. 4063-4074
-
-
Haas, B.1
Klanner, A.2
Ramm, K.3
Sänger, H.L.4
-
18
-
-
0011756493
-
-
Thesis, Heinrich-Heine Universität, Düsseldorf
-
Hecker, R. (1989). Thesis, Heinrich-Heine Universität, Düsseldorf.
-
(1989)
-
-
Hecker, R.1
-
19
-
-
0024210057
-
Analysis of RNA structure by temperature-gradient gel electrophoresis: Viroid replication and processing
-
Hecker, R., Wang, Z., Steger, G., and Riesener, D. (1988). Analysis of RNA structure by temperature-gradient gel electrophoresis: Viroid replication and processing. Gene 72, 59-74.
-
(1988)
Gene
, vol.72
, pp. 59-74
-
-
Hecker, R.1
Wang, Z.2
Steger, G.3
Riesener, D.4
-
20
-
-
0026857950
-
Sequence analysis of five new field isolates demonstrates that the chain length of potato spindle tuber viroid (PSTVd) is not strictly conserved but as variable as in other viroids
-
Herold, T., Haas, B., Singh, R. P., Boucher, A., and Sänger, H. L. (1992). Sequence analysis of five new field isolates demonstrates that the chain length of potato spindle tuber viroid (PSTVd) is not strictly conserved but as variable as in other viroids. Plant Mol. Biol. 19, 329-333.
-
(1992)
Plant Mol. Biol.
, vol.19
, pp. 329-333
-
-
Herold, T.1
Haas, B.2
Singh, R.P.3
Boucher, A.4
Sänger, H.L.5
-
21
-
-
0023695807
-
Viroid-induced phosphorylation of a host protein related to a dsRNA-dependent protein kinase
-
Hiddinga, H. J., Crum, C. J., Hu, J., and Roth, D. A. (1988). Viroid-induced phosphorylation of a host protein related to a dsRNA-dependent protein kinase. Science 241, 451-453.
-
(1988)
Science
, vol.241
, pp. 451-453
-
-
Hiddinga, H.J.1
Crum, C.J.2
Hu, J.3
Roth, D.A.4
-
22
-
-
0022344804
-
Domains in viroids: Evidence of intermolecular RNA rearrangement and their contribution to viroid evolution
-
Keese, P., and Symons, R. H. (1985). Domains in viroids: Evidence of intermolecular RNA rearrangement and their contribution to viroid evolution. Proc. Natl. Acad. Sci. USA 82, 4582-4586.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 4582-4586
-
-
Keese, P.1
Symons, R.H.2
-
23
-
-
0001081597
-
Reconstituted and cellular viroid-protein complexes
-
Klaff, P., Gruner, R., Hecker, R., Sättler, A., Theissen, G., and Riesner, D. (1989). Reconstituted and cellular viroid-protein complexes. J. Gen. Virol. 70, 2257-2270.
-
(1989)
J. Gen. Virol.
, vol.70
, pp. 2257-2270
-
-
Klaff, P.1
Gruner, R.2
Hecker, R.3
Sättler, A.4
Theissen, G.5
Riesner, D.6
-
24
-
-
0011729937
-
-
Thesis, Heinrich-Heine-Universität, Düsseldorf
-
Loss, P. (1989). Thesis, Heinrich-Heine-Universität, Düsseldorf.
-
(1989)
-
-
Loss, P.1
-
25
-
-
0025981740
-
Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA
-
Loss, P., Schmitz, M., Steger, G., and Riesner, D. (1991). Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA. EMBO J. 10, 719-727.
-
(1991)
EMBO J.
, vol.10
, pp. 719-727
-
-
Loss, P.1
Schmitz, M.2
Steger, G.3
Riesner, D.4
-
26
-
-
0025264854
-
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
-
McCaskill, J. S. M. (1990). The equilibrium partition function and base pair binding probabilities for RNA secondary structure. Biopolymers 29, 1105-1119.
-
(1990)
Biopolymers
, vol.29
, pp. 1105-1119
-
-
McCaskill, J.S.M.1
-
27
-
-
0011729376
-
Spot hybridization for detection of viroids and viruses
-
K. Maramorosch and H. Koprowski, Eds. Academic Press, New York
-
Owens, R. A., and Diener, T. O. (1984). Spot hybridization for detection of viroids and viruses. In "Methods in Virology" (K. Maramorosch and H. Koprowski, Eds.), Vol. VII, pp. 173-187. Academic Press, New York.
-
(1984)
Methods in Virology
, vol.7
, pp. 173-187
-
-
Owens, R.A.1
Diener, T.O.2
-
28
-
-
0001563602
-
Site-specific mutagenesis of potato spindle tuber viroid cDNA
-
Owens, R. A., Hammond, R. W., Gardner, R. C., Kiefer, M. C., Thompson, S. M., and Cress, D. E. (1986). Site-specific mutagenesis of potato spindle tuber viroid cDNA. Plant Mol. Biol. 6, 179-192.
-
(1986)
Plant Mol. Biol.
, vol.6
, pp. 179-192
-
-
Owens, R.A.1
Hammond, R.W.2
Gardner, R.C.3
Kiefer, M.C.4
Thompson, S.M.5
Cress, D.E.6
-
29
-
-
0025329758
-
Construction of novel viroid chimeras containing portions of tomato apical stunt and citrus exocortis viroids
-
Owens, R. A., Candresse, T., and Diener, T. O. (1990). Construction of novel viroid chimeras containing portions of tomato apical stunt and citrus exocortis viroids. Virology 175, 238-246.
-
(1990)
Virology
, vol.175
, pp. 238-246
-
-
Owens, R.A.1
Candresse, T.2
Diener, T.O.3
-
30
-
-
0029058608
-
Suppression of potato spindle tuber viroid replication and symptom expression by mutations which stabilize the pathogenicity domain
-
Owens, R. A., Chen, W., Hu, Y., and Hsu, Y-H. (1995). Suppression of potato spindle tuber viroid replication and symptom expression by mutations which stabilize the pathogenicity domain. Virology 208, 554-564.
-
(1995)
Virology
, vol.208
, pp. 554-564
-
-
Owens, R.A.1
Chen, W.2
Hu, Y.3
Hsu, Y.-H.4
-
31
-
-
0000745979
-
Detection and identification of viroids and viral nucleic acids by "dot-blot" hybridization
-
Palukaitis, P., Cotts, S., and Zaitlin, M. (1985). Detection and identification of viroids and viral nucleic acids by "dot-blot" hybridization. Acta Horticult. 164, 109-118.
-
(1985)
Acta Horticult.
, vol.164
, pp. 109-118
-
-
Palukaitis, P.1
Cotts, S.2
Zaitlin, M.3
-
32
-
-
0026651395
-
Conformation of the TAR RNA-arginine complex by NMR spectroscopy
-
Puglisi, J. D., Tan, R., Calnan, B. J., Frankel, A. D., and Williamson, J. R. (1992). Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science 257, 76-80.
-
(1992)
Science
, vol.257
, pp. 76-80
-
-
Puglisi, J.D.1
Tan, R.2
Calnan, B.J.3
Frankel, A.D.4
Williamson, J.R.5
-
33
-
-
0029240511
-
Characterization of the signal recognition particle (SRP) RNA population of tomato (Lycopersicon esculentum)
-
Riedel, L., Pütz, A., Hauser, M. T., Luckinger, R., Wassenegger, M., and Sänger, H. L. (1995). Characterization of the signal recognition particle (SRP) RNA population of tomato (Lycopersicon esculentum). Plant Mol. Biol. 27, 669-680.
-
(1995)
Plant Mol. Biol.
, vol.27
, pp. 669-680
-
-
Riedel, L.1
Pütz, A.2
Hauser, M.T.3
Luckinger, R.4
Wassenegger, M.5
Sänger, H.L.6
-
34
-
-
0011785139
-
Structure formation
-
T. O. Diener, Ed. Plenum, New York
-
Riesner, D. (1987). Structure formation. In "The Viroids" (T. O. Diener, Ed.), pp. 63-98. Plenum, New York.
-
(1987)
The Viroids
, pp. 63-98
-
-
Riesner, D.1
-
35
-
-
0002262619
-
Structure of viroids and their replication intermediates. Are thermodynamic domains also functional domains?
-
Riesner, D. (1990). Structure of viroids and their replication intermediates. Are thermodynamic domains also functional domains? Semin. Virol. 1, 83-99.
-
(1990)
Semin. Virol.
, vol.1
, pp. 83-99
-
-
Riesner, D.1
-
36
-
-
0011785516
-
Viroid and viroid-like RNA
-
W. Saenger, Ed. Nucleic Acids, Subvol. d - Physical Data, II - Theoretical Investigations, Springer-Verlag, Berlin
-
Riesner, D., and Steger, G. (1990). Viroid and viroid-like RNA. In "Landolt-Börnstein - Group VII Biophysics" (W. Saenger, Ed.), Vol. 1 -Nucleic Acids, Subvol. d - Physical Data, II - Theoretical Investigations, pp. 194-243. Springer-Verlag, Berlin.
-
(1990)
Landolt-Börnstein - Group VII Biophysics
, vol.1
, pp. 194-243
-
-
Riesner, D.1
Steger, G.2
-
37
-
-
0023067287
-
Viroids: Subcellular location and structure of replication intermediates
-
J. J. Lee and J. F. Fredrick, Eds. N.Y. Acad. Sci., New York
-
Riesner, D., Klaff, P., Steger, G., and Hecker, R. (1987). Viroids: Subcellular location and structure of replication intermediates. In "Endocytobiology III" (J. J. Lee and J. F. Fredrick, Eds.), Vol. 503, pp. 212-237. N.Y. Acad. Sci., New York.
-
(1987)
Endocytobiology III
, vol.503
, pp. 212-237
-
-
Riesner, D.1
Klaff, P.2
Steger, G.3
Hecker, R.4
-
38
-
-
0023180292
-
Temperature gradient gel electroporesis: Thermodynamic analysis of nucleic acids and proteins in purified form and in celllular extracts
-
Rosenbaum, V., and Riesner, D. (1987). Temperature gradient gel electroporesis: Thermodynamic analysis of nucleic acids and proteins in purified form and in celllular extracts. Biophys. Chem. 26, 235-246.
-
(1987)
Biophys. Chem.
, vol.26
, pp. 235-246
-
-
Rosenbaum, V.1
Riesner, D.2
-
39
-
-
0003903343
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning - A Laboratory Manual." Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning - A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
40
-
-
0026472484
-
Identification of multiple structural domains regulating viroid pathogenicity
-
Sano, T., Candresse, T., Hammond, R. W., Diener, T. O., and Owens, R. A. (1992). Identification of multiple structural domains regulating viroid pathogenicity. Proc. Natl. Acad. Sci. USA 89, 10104-10108.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10104-10108
-
-
Sano, T.1
Candresse, T.2
Hammond, R.W.3
Diener, T.O.4
Owens, R.A.5
-
41
-
-
0029078852
-
Functional characterization of the RNA-binding domain and motif of the double-stranded RNA-dependent protein kinase DAI (PKR)
-
Schmedt, C., Green, S. R., Manche, L., Taylor, D. R., Ma, Y., and Matthews, M. B. (1995). Functional characterization of the RNA-binding domain and motif of the double-stranded RNA-dependent protein kinase DAI (PKR). J. Mol. Biol. 249, 29-44.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 29-44
-
-
Schmedt, C.1
Green, S.R.2
Manche, L.3
Taylor, D.R.4
Ma, Y.5
Matthews, M.B.6
-
42
-
-
0026725254
-
Base-pair probability profiles of RNA secondary structures
-
Schmitz, M., and Steger, G. (1992). Base-pair probability profiles of RNA secondary structures. Comp. Appl. Biosci. 8, 389-399.
-
(1992)
Comp. Appl. Biosci.
, vol.8
, pp. 389-399
-
-
Schmitz, M.1
Steger, G.2
-
43
-
-
0001510299
-
Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV)
-
Schnölzer, M., Haas, B., Ramm, K., Hofmann, H., and Sänger, H. L. (1985). Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV). EMBO J. 4, 2181-2190.
-
(1985)
EMBO J.
, vol.4
, pp. 2181-2190
-
-
Schnölzer, M.1
Haas, B.2
Ramm, K.3
Hofmann, H.4
Sänger, H.L.5
-
45
-
-
0021532353
-
Conformational transitions in viroids and virusoids: Comparison of results from energy minimization algorithm and from experimental data
-
Steger, G., Hofmann, H., Förtsch, J., Gross, H. J., Randles, J. W., Sänger, H. L., and Riesner, D. (1984). Conformational transitions in viroids and virusoids: Comparison of results from energy minimization algorithm and from experimental data. J. Biomol. Struct. Dyn. 2, 543-571.
-
(1984)
J. Biomol. Struct. Dyn.
, vol.2
, pp. 543-571
-
-
Steger, G.1
Hofmann, H.2
Förtsch, J.3
Gross, H.J.4
Randles, J.W.5
Sänger, H.L.6
Riesner, D.7
-
46
-
-
0022432038
-
Eleven new sequence variants of citrus exocortis viroid and correlation of sequence with pathogenicity
-
Visvader, J. A., and Symons, R. H. (1985). Eleven new sequence variants of citrus exocortis viroid and correlation of sequence with pathogenicity. Nucleic Acids Res. 13, 2907-2920.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 2907-2920
-
-
Visvader, J.A.1
Symons, R.H.2
-
47
-
-
0027439912
-
The conformation of loop E of eukaryotic 5S ribosomal RNA
-
Wimberly, B., Varani, G., and Tinoco, I., Jr. (1993). The conformation of loop E of eukaryotic 5S ribosomal RNA. Biochemistry 32, 1078-1087.
-
(1993)
Biochemistry
, vol.32
, pp. 1078-1087
-
-
Wimberly, B.1
Varani, G.2
Tinoco I., Jr.3
-
48
-
-
0011731961
-
Analysis of mutations in viroid RNA by non-denaturing and temperature gradient gel electrophoresis
-
R. Sarma and M. Sarma, Eds. Adenine Press, Schenectady, NY
-
Zimmat, R., Gruner, R., Hecker, R., Steger, G., and Riesner, D. (1990). Analysis of mutations in viroid RNA by non-denaturing and temperature gradient gel electrophoresis. In "Proceedings of the 6th Conversation in Biomolecular Stereodynamics" (R. Sarma and M. Sarma, Eds.), Vol. 3, pp. 339-357. Adenine Press, Schenectady, NY.
-
(1990)
Proceedings of the 6th Conversation in Biomolecular Stereodynamics
, vol.3
, pp. 339-357
-
-
Zimmat, R.1
Gruner, R.2
Hecker, R.3
Steger, G.4
Riesner, D.5
|