Crowding agents and osmolytes provide insight into the formation and dissociation of RNase A oligomers

Archives of Biochemistry and Biophysics

Volumn 506, Issue 2, 2011, Pages 123-129

  Ercole, Carmine ^a   López Alonso, Jorge Pedro ^b   Font, Josep ^c,d   Ribó, Marc ^c   Vilanova, Maria ^c   Picone, Delia ^a   Laurents, Douglas V ^b  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b INSTITUTO DE QUÍMICA FÍSICA ROCASOLANO   (Spain)

^c Laboratori d'Enginyeria de Proteïnes   (Spain)

^d CENTENARY INSTITUTE   (Australia)

Author keywords

3D domain swapping; Hydrogen deuterium exchange; Macromolecular crowding; NMR spectroscopy; Protein folding

Indexed keywords

AMIDE; DEUTERIUM; DEXTRAN; FICOLL; GLYCINE; HYDROGEN; OLIGOMER; RIBONUCLEASE A; SODIUM SULFATE; TRIMETHYLAMMONIUM OXIDE; TRIMETHYLAMMONIUM SALT DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; BETA SHEET; DEUTERIUM HYDROGEN EXCHANGE; DISSOCIATION; HYDROGEN BOND; OLIGOMERIZATION; PRIORITY JOURNAL; SHELF LIFE;

ANIMALS; CATTLE; DEXTRANS; DIMERIZATION; ENZYME STABILITY; FICOLL; HYDROGEN BONDING; METHYLAMINES; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, SECONDARY; PROTEIN SUBUNITS; RIBONUCLEASE, PANCREATIC;

EID: 79151479228     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2010.11.014     Document Type: Article

References (61)

1. M. Libonati Biochim. Biophys. Acta 228 1971 440 445
2. M. Libonati, and S. Sorrentino Method Enzymol. 341 2001 234 248
3. M. Libonati, and G. Gotte Biochem. J. 380 2004 311 327
4. M. Libonati Cell. Mol. Life Sci. 61 2004 2431 2436
5. Y. Liu, G. Gotte, M. Libonati, and D. Eisenberg Nat. Struct. Biol. 8 2001 211 214
6. S. Sambashivan, Y. Liu, M.R. Sawaya, M. Gingery, and D. Eisenberg Nature 437 2005 266 269
7. A.M. Crestfield, W.H. Stein, and S. Moore Arch. Biochem. Biophys. Suppl. 1 1962 217 222
8. J.P. López-Alonso, F. Diez-García, J. Font, M. Ribó, M. Vilanova, J.M. Scholtz, C. González, F. Vottariello, G. Gotte, M. Libonati, and D.V. Laurents Bioconj. Chem. 20 2009 1459 1473
9. G. Gotte, and M. Libonati J. Biol. Chem. 279 2004 36670 36679
10. G. Cozza, S. Moro, and G. Gotte Biopolymers 89 2008 26 39
11. G. Gotte, M. Donadelli, D.V. Laurents, F. Vottariello, M. Morbio, and M. Libonati Biochemistry 45 2006 10795 10806
12. C. Ercole, R.A. Colamarino, E. Pizzo, E. Fogolari, R. Spadaccini, and D. Picone Biopolymers 91 2009 1009 1017
13. A. Merlino, A. Russo, I. Krauss, M. Perillo, C.A. Mattia, C. Ercole, D. Picone, A. Vergara, and F. Sica Biopolymers 91 2009 1029 1037
14. G. Gotte, and M. Libonati Biochim. Biophys. Acta 1784 2008 638 650
15. J.P. López-Alonso, M. Bruix, J. Font, M. Ribó, M. Vilanova, M. Rico, G. Gotte, M. Libonati, C. González, and D.V. Laurents J. Biol. Chem. 281 2006 9400 9406
16. J.P. López-Alonso, M. Bruix, J. Font, M. Ribó, M. Vilanova, M.A. Jiménez, J. Santoro, C. González, and D.V. Laurents J. Am. Chem. Soc. 132 2010 1621 1630
17. J.P. López-Alonso, G. Gotte, and D.V. Laurents Arch. Biochem. Biophys. 489 2009 41 47
18. K.H. Miller, J.R. Karr, and S. Marqusee J. Mol. Biol. 400 2010 567 578
19. G. Rivas, J.A. Fernández, and A.P. Minton Biochemistry 38 1999 9379 9388
20. H.X. Zhou, G. Rivas, and A.P. Minton Annu. Rev. Biophys. 37 2008 375 397
21. G.J. Pielak, C. Li, A.C. Miklos, A.P. Schlesinger, K.M. Slade, G.F. Wang, and I.G. Zigoneanu Biochemistry 48 2009 226 234
22. Y. Liu, and D. Eisenberg Protein Sci. 11 2002 1285 1299
23. R. Kolodziejczyk, K. Michalska, A. Hernandez Santoyo, M. Wahlbom, A. Grubb, and M. Jaskolski FEBS J. 277 2010 1726 1737
24. E. Zerovnik, R.A. Staniforth, and D. Turk Biochemie 2010 10.1016/j.biochi.2010.05.012
25. Y. Liu, G. Gotte, M. Libonati, and D. Eisenberg Protein Sci. 11 2002 371 380
26. P.K. Teng, and D. Eisenberg Protein Eng. Des. Sel. 22 2009 531 538
27. G. Gotte, M. Bertoldi, and M. Libonati Eur. J. Biochem. 265 1999 680 687
28. G. Gotte, F. Vottariello, and M. Libonati J. Biol. Chem. 278 2003 10763 10769
29. M. Ribó, A. Benito, A. Canals, M.V. Nogués, C.M. Cuchillo, and M. Vilanova Methods Enzymol. 341 2001 221 234
30. Y. Bai, J.S. Milne, L. Mayne, and S.W. Englander Proteins Struc. Func. Gen. 17 1993 75 86
31. Y.Z. Zhang, Protein and peptide structure and interactions studied by hydrogen exchange and NMR, Ph.D. Thesis, Department of Structural Biology and Molecular Biophysics, University of Pennsylvania, Philadelphia.
32. J.L. Neira, P. Sevilla, M. Menéndez, M. Bruix, and M. Rico J. Mol. Biol. 285 1999 627 643
33. Y. Qu, and D.W. Bolen Biochemistry 42 2003 5837 5849
34. C.H. Ramos, and R.L. Baldwin Protein Sci. 11 2002 1771 1778
35. F.X. Schmid Biochemistry 22 1983 4690 4696
36. Y. Qu, C.L. Bolen, and D.W. Bolen Proc. Natl. Acad. Sci. (USA) 95 1998 9268 9273
37. G. Gotte, D.V. Laurents, and M. Libonati Biochim. Biophys. Acta 1764 2006 44 54
38. B.T. Nall, J.R. Garel, and R.L. Baldwin J. Mol. Biol. 118 1978 317 330
39. J. Matousek, G. Gotte, P. Pouckova, J. Soucek, T. Slavik, F. Vottariello, and M. Libonati J. Biol. Chem. 278 2003 23817 23822
40. C. Park, and R.T. Raines Protein Sci. 9 2000 2026 2033
41. B.R. Zhou, Y. Liang, F. Du, Z. Zhou, and J. Chen J. Biol. Chem. 279 2004 55109 55116
42. H.X. Zhou Proteins 72 2008 1109 1113
43. A. Christiansen, Q. Wang, A. Samiotakis, M.S. Cheung, and P. Wittung-Stafshede Biochemistry 49 2010 6519 6530
44. A. Dhar, A. Samiotakis, S. Ebbinghaus, L. Nienhaus, D. Homouz, M. Gruebele, and M.S. Cheung Proc. Natl. Acad. Sci. (USA) 107 2010 17586 17591
45. R. Leventis, and J.R. Silvius Biophys. J. 99 2010 2125 2133
46. K.H. Cook, F.X. Schmid, and R.L. Baldwin Proc. Natl. Acad. Sci. (USA) 72 1979 6157 6161
47. R. Bhat, W.J. Wedemeyer, and H.A. Scheraga Biochemistry 42 2003 5722 5728
48. L.M.F. Holthauzen, J. Rösgen, and D.W. Bolen Biochemistry 49 2010 1310 1318
49. T. Kiefhaber, A.M. Labhardt, and R.L. Baldwin Nature 375 1995 513 515
50. E.I. Shakhnovich, and A.V. Finkelstein Biopolymers 28 1989 1667 1680
51. S.K. Jha, and J.B. Udgaonkar Proc. Natl. Acad. Sci. (USA) 160 2009 12289 12294
52. R.L. Baldwin, C. Frieden, and G.D. Rose Proteins 78 2010 2725 2737
53. D. Picone, A. Di Fiore, C. Ercole, M. Franzese, F. Sica, S. Tomaselli, and L. Mazzarella J. Biol. Chem. 280 2005 13771 13778
54. D.A. Schultz, F.X. Schmid, and R.L. Baldwin Protein Sci. 1 1992 917 924
55. W.J. Wedemeyer, E. Welker, and H.A. Scheraga Biochemistry 41 2002 14637 14644
56. F. Avitable, C. Alfano, R. Spadaccini, O. Crescenzi, A.M. D'Ursi, G. D'Alessio, T. Tancredi, and D. Picone Biochemistry 42 2003 8704 8711
57. J.B. Udgaonkar, and R.L. Baldwin Proc. Natl. Acad. Sci. (USA) 87 1990 8197 8201
58. J.B. Udgaonkar, and R.L. Baldwin Biochemistry 34 1995 4088 4096
59. R. Nelson, M.R. Swaya, N. Balbitrie, A.O. Madsen, C. Riekel, R. Grothe, and D. Eisenberg Nature 435 2005 773 778
60. E. Chatani, and Y. Goto Biochim Biophys Acta 1753 2005 64 75
61. K. Tsemekhman, L. Goldschmidt, D. Eisenberg, and D. Baker Protein Sci. 16 2007 761 764